Wall clock time and date at job start Tue Mar 31 2020 00:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34176 * 125.44237 * 2 1 4 4 C 1.47016 * 105.95612 * 180.02562 * 3 2 1 5 5 C 1.47381 * 127.19069 * 180.02562 * 4 3 2 6 6 O 1.21615 * 119.99704 * 158.01984 * 5 4 3 7 7 N 1.34778 * 120.00034 * 338.28986 * 5 4 3 8 8 C 1.46494 * 119.99754 * 3.17399 * 7 5 4 9 9 C 1.46501 * 119.99662 * 183.17083 * 7 5 4 10 10 C 1.52999 * 109.46809 * 96.64634 * 9 7 5 11 11 H 1.09005 * 112.96740 * 61.57723 * 10 9 7 12 12 C 1.53939 * 113.77328 * 289.89940 * 10 9 7 13 13 C 1.53946 * 86.29409 * 222.09343 * 12 10 9 14 14 N 1.47577 * 113.77054 * 193.25295 * 10 9 7 15 15 C 1.36940 * 134.49252 * 318.93324 * 14 10 9 16 16 H 1.07999 * 119.99935 * 5.91121 * 15 14 10 17 17 C 1.38815 * 120.00015 * 185.90381 * 15 14 10 18 18 N 1.31624 * 120.00085 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47229 * 60.00413 * 19 17 15 21 21 H 1.48503 * 109.47080 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47293 * 300.00019 * 19 17 15 23 23 C 1.36415 * 105.61746 * 0.25487 * 4 3 2 24 24 O 1.33652 * 108.39483 * 359.58115 * 23 4 3 25 25 H 1.09000 * 109.47046 * 89.99963 * 1 2 3 26 26 H 1.08997 * 109.47760 * 210.00267 * 1 2 3 27 27 H 1.09007 * 109.46923 * 330.00433 * 1 2 3 28 28 H 1.08000 * 127.01965 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47367 * 83.60670 * 8 7 5 30 30 H 1.08998 * 109.46968 * 203.60450 * 8 7 5 31 31 H 1.08995 * 109.47455 * 323.60584 * 8 7 5 32 32 H 1.08998 * 109.46670 * 216.64294 * 9 7 5 33 33 H 1.08997 * 109.47547 * 336.64775 * 9 7 5 34 34 H 1.09007 * 113.73868 * 336.43626 * 12 10 9 35 35 H 1.08997 * 113.74505 * 107.63820 * 12 10 9 36 36 H 1.08997 * 113.77252 * 137.90518 * 13 12 10 37 37 H 1.09010 * 113.76696 * 269.19484 * 13 12 10 38 38 H 0.96997 * 119.99934 * 179.97438 * 18 17 15 39 39 H 1.07998 * 125.80543 * 179.70917 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6027 -0.0006 5 6 4.9025 1.4124 -0.0003 6 8 5.9472 0.9300 0.3933 7 7 4.8697 2.6890 -0.4312 8 6 3.5977 3.2936 -0.8342 9 6 6.1063 3.4719 -0.4965 10 6 6.6635 3.4273 -1.9207 11 1 5.9853 3.8596 -2.6565 12 6 7.2227 2.0514 -2.3254 13 6 8.3855 2.8256 -2.9724 14 7 8.0516 3.9160 -2.0320 15 6 8.7486 4.9593 -1.4834 16 1 8.2876 5.5792 -0.7287 17 6 10.0477 5.2201 -1.8974 18 7 10.6093 4.4648 -2.8175 19 14 10.9986 6.6429 -1.1486 20 1 11.1234 6.4381 0.3169 21 1 12.3519 6.7083 -1.7567 22 1 10.2766 7.9136 -1.4112 23 6 3.5789 -0.7583 -0.0068 24 8 2.2852 -1.0936 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.9596 2.1229 0.0004 29 1 3.0764 3.6652 0.0480 30 1 3.7890 4.1204 -1.5183 31 1 2.9813 2.5452 -1.3322 32 1 5.8969 4.5054 -0.2205 33 1 6.8386 3.0528 0.1934 34 1 7.5239 1.4338 -1.4791 35 1 6.5977 1.5166 -3.0405 36 1 9.3633 2.3769 -2.7974 37 1 8.2154 3.0803 -4.0186 38 1 11.5169 4.6473 -3.1069 39 1 4.4102 -1.4478 -0.0134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085564265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:14 Heat of formation + Delta-G solvation = 48.315689 kcal Electronic energy + Delta-G solvation = -21674.459354 eV Core-core repulsion = 18393.510227 eV Total energy + Delta-G solvation = -3280.949127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.45 seconds Orbital eigenvalues (eV) -42.70796 -39.52937 -37.58142 -35.25811 -33.31709 -32.21490 -31.96667 -28.53252 -27.75634 -27.12693 -26.33048 -23.70755 -23.16978 -21.95229 -20.92479 -18.95665 -18.73928 -17.38246 -16.70552 -16.55502 -16.21741 -15.79733 -15.30097 -14.62437 -14.22482 -13.95143 -13.54281 -13.47355 -13.37505 -13.32448 -13.22460 -12.84113 -12.30623 -12.22124 -12.01831 -11.58778 -11.33639 -10.98214 -10.80758 -10.64905 -10.38891 -9.92118 -9.78529 -9.73522 -9.63393 -9.39105 -8.75535 -8.70464 -8.25313 -6.78841 -5.69761 -3.01413 1.37447 1.89163 2.67733 3.17392 3.43872 3.45650 3.48049 3.49242 4.32237 4.51813 4.68274 4.79573 4.97291 5.10829 5.15019 5.19693 5.30533 5.36784 5.42200 5.51974 5.54748 5.67247 5.71756 5.89309 5.95177 6.03092 6.14738 6.18905 6.44715 6.60589 6.76324 6.82108 6.85593 6.91369 7.34311 7.53530 7.65439 7.66963 8.05533 8.42241 9.11345 9.78209 10.69842 11.48079 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038887 B = 0.003705 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.862536 B = 7555.284887 C = 7780.234506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.196 4.196 4 C -0.229 4.229 5 C 0.584 3.416 6 O -0.535 6.535 7 N -0.600 5.600 8 C 0.071 3.929 9 C 0.115 3.885 10 C 0.129 3.871 11 H 0.041 0.959 12 C -0.158 4.158 13 C 0.165 3.835 14 N -0.600 5.600 15 C -0.223 4.223 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.910 3.090 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.041 3.959 24 O -0.177 6.177 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.165 0.835 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.026 0.974 38 H 0.253 0.747 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.780 -8.189 4.017 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 C -0.215 4.215 4 C -0.233 4.233 5 C 0.373 3.627 6 O -0.413 6.413 7 N -0.333 5.333 8 C -0.072 4.072 9 C -0.008 4.008 10 C 0.021 3.979 11 H 0.058 0.942 12 C -0.196 4.196 13 C 0.040 3.960 14 N -0.327 5.327 15 C -0.351 4.351 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.740 3.260 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.213 1.213 23 C -0.029 4.029 24 O -0.073 6.073 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.182 0.818 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -21.038 -8.480 4.259 23.079 hybrid contribution 0.628 1.242 0.160 1.401 sum -20.410 -7.238 4.419 22.101 Atomic orbital electron populations 1.20317 0.84904 1.04121 1.03629 1.22332 0.94092 0.83973 1.06267 1.23064 0.90791 0.99838 1.07816 1.21499 0.94017 0.94130 1.13673 1.17249 0.86727 0.81266 0.77472 1.90814 1.31801 1.71224 1.47420 1.47571 1.08940 1.12109 1.64654 1.22200 0.85928 0.99266 0.99821 1.21852 0.84722 0.94464 0.99722 1.22500 0.88959 0.93040 0.93433 0.94210 1.23794 0.99237 0.96004 1.00592 1.22136 0.96150 0.85786 0.91905 1.46004 1.04140 1.31447 1.51091 1.18944 0.95049 1.05192 1.15924 0.90445 1.24797 0.97431 0.99337 0.98802 1.69831 1.14211 1.40070 1.32593 0.86239 0.79187 0.82038 0.78532 1.21077 1.21613 1.21258 1.24335 0.83511 0.95511 0.99504 1.83743 1.16665 1.35477 1.71404 0.89995 0.90512 0.89284 0.81801 0.92851 0.90817 0.90401 0.91344 0.88756 0.89921 0.93893 0.91664 0.95598 0.93657 0.76674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.40 36.00 0.37 0.00 16 2 C -0.02 -0.17 7.28 -35.74 -0.26 -0.43 16 3 C -0.20 -2.01 8.63 -37.46 -0.32 -2.33 16 4 C -0.23 -3.04 5.89 -103.28 -0.61 -3.65 16 5 C 0.58 9.76 7.41 -12.54 -0.09 9.66 16 6 O -0.53 -10.88 15.53 5.26 0.08 -10.80 16 7 N -0.60 -9.39 2.84 -182.88 -0.52 -9.91 16 8 C 0.07 0.79 8.84 59.84 0.53 1.32 16 9 C 0.12 2.19 5.36 -4.04 -0.02 2.17 16 10 C 0.13 2.75 4.54 -66.87 -0.30 2.44 16 11 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 12 C -0.16 -3.37 7.57 -25.80 -0.20 -3.57 16 13 C 0.17 4.17 7.38 -2.85 -0.02 4.15 16 14 N -0.60 -15.93 3.58 -169.74 -0.61 -16.54 16 15 C -0.22 -6.39 10.51 -15.06 -0.16 -6.55 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.92 -28.18 11.56 55.49 0.64 -27.54 16 19 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.04 0.48 11.97 30.08 0.36 0.84 16 24 O -0.18 -1.91 10.52 7.64 0.08 -1.83 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.16 1.31 5.44 -52.49 -0.29 1.03 16 29 H 0.05 0.49 7.42 -51.93 -0.39 0.10 16 30 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 31 H 0.08 0.76 5.28 -51.93 -0.27 0.49 16 32 H 0.07 1.23 8.12 -51.93 -0.42 0.80 16 33 H 0.09 2.07 7.19 -51.93 -0.37 1.70 16 34 H 0.08 1.88 7.16 -51.92 -0.37 1.51 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.80 7.46 -51.93 -0.39 1.41 16 37 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.22 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -34.95 325.35 -6.68 -41.63 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.42 Total: -1.28 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.82 Total: 3.76 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.48 Total: -53.99 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.16 Total: -12.63 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.95 -6.68 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085564265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.943 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.45 seconds