Wall clock time and date at job start Tue Mar 31 2020 00:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34176 * 125.44237 * 2 1 4 4 C 1.47016 * 105.95612 * 180.02562 * 3 2 1 5 5 C 1.47381 * 127.19069 * 180.02562 * 4 3 2 6 6 O 1.21615 * 119.99704 * 158.01984 * 5 4 3 7 7 N 1.34778 * 120.00034 * 338.28986 * 5 4 3 8 8 C 1.46494 * 119.99754 * 3.17399 * 7 5 4 9 9 C 1.46501 * 119.99662 * 183.17083 * 7 5 4 10 10 C 1.52999 * 109.46809 * 96.64634 * 9 7 5 11 11 H 1.09005 * 112.96740 * 61.57723 * 10 9 7 12 12 C 1.53939 * 113.77328 * 289.89940 * 10 9 7 13 13 C 1.53946 * 86.29409 * 222.09343 * 12 10 9 14 14 N 1.47577 * 113.77054 * 193.25295 * 10 9 7 15 15 C 1.36940 * 134.49252 * 318.93324 * 14 10 9 16 16 H 1.07999 * 119.99935 * 5.91121 * 15 14 10 17 17 C 1.38815 * 120.00015 * 185.90381 * 15 14 10 18 18 N 1.31624 * 120.00085 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47229 * 60.00413 * 19 17 15 21 21 H 1.48503 * 109.47080 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47293 * 300.00019 * 19 17 15 23 23 C 1.36415 * 105.61746 * 0.25487 * 4 3 2 24 24 O 1.33652 * 108.39483 * 359.58115 * 23 4 3 25 25 H 1.09000 * 109.47046 * 89.99963 * 1 2 3 26 26 H 1.08997 * 109.47760 * 210.00267 * 1 2 3 27 27 H 1.09007 * 109.46923 * 330.00433 * 1 2 3 28 28 H 1.08000 * 127.01965 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47367 * 83.60670 * 8 7 5 30 30 H 1.08998 * 109.46968 * 203.60450 * 8 7 5 31 31 H 1.08995 * 109.47455 * 323.60584 * 8 7 5 32 32 H 1.08998 * 109.46670 * 216.64294 * 9 7 5 33 33 H 1.08997 * 109.47547 * 336.64775 * 9 7 5 34 34 H 1.09007 * 113.73868 * 336.43626 * 12 10 9 35 35 H 1.08997 * 113.74505 * 107.63820 * 12 10 9 36 36 H 1.08997 * 113.77252 * 137.90518 * 13 12 10 37 37 H 1.09010 * 113.76696 * 269.19484 * 13 12 10 38 38 H 0.96997 * 119.99934 * 179.97438 * 18 17 15 39 39 H 1.07998 * 125.80543 * 179.70917 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6027 -0.0006 5 6 4.9025 1.4124 -0.0003 6 8 5.9472 0.9300 0.3933 7 7 4.8697 2.6890 -0.4312 8 6 3.5977 3.2936 -0.8342 9 6 6.1063 3.4719 -0.4965 10 6 6.6635 3.4273 -1.9207 11 1 5.9853 3.8596 -2.6565 12 6 7.2227 2.0514 -2.3254 13 6 8.3855 2.8256 -2.9724 14 7 8.0516 3.9160 -2.0320 15 6 8.7486 4.9593 -1.4834 16 1 8.2876 5.5792 -0.7287 17 6 10.0477 5.2201 -1.8974 18 7 10.6093 4.4648 -2.8175 19 14 10.9986 6.6429 -1.1486 20 1 11.1234 6.4381 0.3169 21 1 12.3519 6.7083 -1.7567 22 1 10.2766 7.9136 -1.4112 23 6 3.5789 -0.7583 -0.0068 24 8 2.2852 -1.0936 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.9596 2.1229 0.0004 29 1 3.0764 3.6652 0.0480 30 1 3.7890 4.1204 -1.5183 31 1 2.9813 2.5452 -1.3322 32 1 5.8969 4.5054 -0.2205 33 1 6.8386 3.0528 0.1934 34 1 7.5239 1.4338 -1.4791 35 1 6.5977 1.5166 -3.0405 36 1 9.3633 2.3769 -2.7974 37 1 8.2154 3.0803 -4.0186 38 1 11.5169 4.6473 -3.1069 39 1 4.4102 -1.4478 -0.0134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085564265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:12 Heat of formation + Delta-G solvation = 25.391230 kcal Electronic energy + Delta-G solvation = -21675.453433 eV Core-core repulsion = 18393.510227 eV Total energy + Delta-G solvation = -3281.943206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.53223 -40.90240 -39.36151 -36.56949 -34.36937 -34.00024 -32.84021 -29.98313 -29.84123 -27.99715 -27.17354 -25.38793 -24.99061 -23.18158 -21.97311 -20.86480 -19.73122 -18.71990 -18.29666 -17.58030 -17.31912 -17.08291 -16.79919 -16.40367 -15.82015 -15.30122 -15.09568 -14.59588 -14.20634 -14.06474 -14.01710 -13.90790 -13.70544 -13.64276 -13.36563 -12.94316 -12.75056 -12.61936 -12.54422 -12.42764 -12.28558 -11.83474 -11.61983 -11.31343 -11.05706 -10.84889 -10.67421 -9.73305 -9.41432 -8.89447 -7.89786 -5.22997 0.42512 1.10515 1.44258 1.48840 1.54392 1.83179 2.03532 2.30196 2.49971 3.29269 3.39462 3.55106 3.77431 3.89790 4.03942 4.18210 4.28963 4.32959 4.40754 4.44932 4.54330 4.63415 4.77042 4.81281 4.82168 4.86275 4.92097 4.95353 4.99504 5.07104 5.16163 5.21225 5.46329 5.49871 5.53876 5.71191 5.92970 6.08404 6.43138 6.91125 7.16955 7.61558 8.58421 9.28487 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038887 B = 0.003705 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.862536 B = 7555.284887 C = 7780.234506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.013 4.013 3 C -0.201 4.201 4 C -0.255 4.255 5 C 0.579 3.421 6 O -0.585 6.585 7 N -0.599 5.599 8 C 0.065 3.935 9 C 0.130 3.870 10 C 0.136 3.864 11 H 0.061 0.939 12 C -0.133 4.133 13 C 0.161 3.839 14 N -0.629 5.629 15 C -0.231 4.231 16 H 0.088 0.912 17 C -0.071 4.071 18 N -0.957 5.957 19 Si 0.980 3.020 20 H -0.278 1.278 21 H -0.296 1.296 22 H -0.272 1.272 23 C 0.042 3.958 24 O -0.180 6.180 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.188 0.812 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.023 0.977 38 H 0.248 0.752 39 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.133 -7.501 4.445 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.062 4.062 3 C -0.220 4.220 4 C -0.259 4.259 5 C 0.370 3.630 6 O -0.467 6.467 7 N -0.330 5.330 8 C -0.077 4.077 9 C 0.005 3.995 10 C 0.029 3.971 11 H 0.078 0.922 12 C -0.172 4.172 13 C 0.036 3.964 14 N -0.355 5.355 15 C -0.360 4.360 16 H 0.105 0.895 17 C -0.264 4.264 18 N -0.606 5.606 19 Si 0.807 3.193 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.198 1.198 23 C -0.029 4.029 24 O -0.076 6.076 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.128 0.872 28 H 0.205 0.795 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -24.480 -7.781 4.691 26.112 hybrid contribution 1.551 0.952 0.032 1.820 sum -22.929 -6.829 4.723 24.386 Atomic orbital electron populations 1.20547 0.81802 1.05537 1.05038 1.23131 0.95687 0.83124 1.04236 1.23266 0.89032 1.01324 1.08343 1.21366 0.94026 0.94537 1.16011 1.17767 0.87225 0.81508 0.76492 1.90785 1.33910 1.72266 1.49689 1.47596 1.09294 1.11774 1.64329 1.22522 0.83997 0.99818 1.01331 1.21405 0.85678 0.95315 0.97068 1.22638 0.87177 0.91960 0.95279 0.92211 1.23502 0.97704 0.96001 0.99952 1.22058 0.95884 0.86560 0.91911 1.46336 1.06696 1.31263 1.51242 1.19399 0.95522 1.05246 1.15786 0.89458 1.25695 0.98638 1.02241 0.99812 1.70032 1.14169 1.41982 1.34460 0.85136 0.77276 0.79140 0.77698 1.20386 1.22227 1.19825 1.24567 0.84274 0.95385 0.98631 1.83780 1.16342 1.36332 1.71157 0.88448 0.89749 0.87235 0.79495 0.90300 0.90106 0.88655 0.89999 0.92391 0.91656 0.90941 0.95155 0.95959 0.94365 0.75802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.40 71.23 0.74 0.28 16 2 C -0.01 -0.21 7.28 24.76 0.18 -0.03 16 3 C -0.20 -3.49 8.63 23.65 0.20 -3.29 16 4 C -0.25 -6.42 5.89 -18.99 -0.11 -6.53 16 5 C 0.58 19.09 7.41 86.65 0.64 19.73 16 6 O -0.58 -24.52 15.53 -4.08 -0.06 -24.58 16 7 N -0.60 -17.84 2.84 -850.75 -2.41 -20.25 16 8 C 0.06 1.21 8.84 127.77 1.13 2.34 16 9 C 0.13 4.85 5.36 86.38 0.46 5.31 16 10 C 0.14 5.72 4.54 45.09 0.20 5.93 16 11 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 12 C -0.13 -5.72 7.57 31.25 0.24 -5.49 16 13 C 0.16 8.39 7.38 86.44 0.64 9.03 16 14 N -0.63 -33.81 3.58 -690.93 -2.47 -36.28 16 15 C -0.23 -13.35 10.51 84.03 0.88 -12.47 16 16 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 17 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 18 N -0.96 -60.47 11.56 21.65 0.25 -60.22 16 19 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 23 C 0.04 0.93 11.97 67.39 0.81 1.74 16 24 O -0.18 -3.52 10.52 4.42 0.05 -3.47 16 25 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.11 0.28 8.14 -2.38 -0.02 0.26 16 28 H 0.19 2.19 5.44 -2.91 -0.02 2.18 16 29 H 0.08 1.11 7.42 -2.39 -0.02 1.10 16 30 H 0.08 1.43 8.02 -2.39 -0.02 1.41 16 31 H 0.10 1.50 5.28 -2.39 -0.01 1.49 16 32 H 0.08 2.82 8.12 -2.39 -0.02 2.80 16 33 H 0.06 2.61 7.19 -2.39 -0.02 2.59 16 34 H 0.06 3.06 7.16 -2.38 -0.02 3.04 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.03 1.76 7.46 -2.39 -0.02 1.74 16 37 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.23 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -78.44 325.35 4.91 -73.54 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.05 Total: 9.29 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 6.48 Total: 12.81 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -4.64 Total: -116.75 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.02 Total: -28.05 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -78.44 4.91 -73.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085564265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.927 kcal (2) G-P(sol) polarization free energy of solvation -78.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds