Wall clock time and date at job start Tue Mar 31 2020 01:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35127 * 126.43947 * 2 1 4 4 O 1.33930 * 108.76702 * 179.97438 * 3 2 1 5 5 C 1.34917 * 109.38543 * 359.97438 * 4 3 2 6 6 C 1.46659 * 125.98701 * 179.97438 * 5 4 3 7 7 O 1.21700 * 119.99589 * 172.97116 * 6 5 4 8 8 N 1.34778 * 120.00223 * 352.97517 * 6 5 4 9 9 C 1.46499 * 119.99709 * 4.42831 * 8 6 5 10 10 C 1.46493 * 119.99810 * 184.43342 * 8 6 5 11 11 C 1.53002 * 109.47332 * 84.50738 * 10 8 6 12 12 H 1.08997 * 112.96492 * 292.03394 * 11 10 8 13 13 C 1.53951 * 113.76701 * 63.70711 * 11 10 8 14 14 C 1.53940 * 86.28858 * 137.90931 * 13 11 10 15 15 N 1.47583 * 113.77199 * 160.34668 * 11 10 8 16 16 C 1.36930 * 134.48793 * 41.07427 * 15 11 10 17 17 H 1.08002 * 120.00500 * 4.85037 * 16 15 11 18 18 C 1.38816 * 119.99927 * 184.85265 * 16 15 11 19 19 N 1.31617 * 119.99953 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47631 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47147 * 120.00468 * 20 18 16 23 23 H 1.48500 * 109.47042 * 240.00028 * 20 18 16 24 24 C 1.36542 * 108.01945 * 359.72818 * 5 4 3 25 25 H 1.08998 * 109.46841 * 90.02833 * 1 2 3 26 26 H 1.08994 * 109.47023 * 330.02544 * 1 2 3 27 27 H 1.09000 * 109.46529 * 210.02805 * 1 2 3 28 28 H 1.08004 * 125.61712 * 0.03307 * 3 2 1 29 29 H 1.09004 * 109.47087 * 84.00467 * 9 8 6 30 30 H 1.08997 * 109.46929 * 204.00299 * 9 8 6 31 31 H 1.08997 * 109.47373 * 324.00713 * 9 8 6 32 32 H 1.08997 * 109.46922 * 204.50753 * 10 8 6 33 33 H 1.08995 * 109.47304 * 324.50444 * 10 8 6 34 34 H 1.09003 * 113.74174 * 252.25339 * 13 11 10 35 35 H 1.09001 * 113.74203 * 23.45873 * 13 11 10 36 36 H 1.09008 * 113.76977 * 90.69636 * 14 13 11 37 37 H 1.09005 * 113.77377 * 221.97598 * 14 13 11 38 38 H 0.96994 * 119.99840 * 179.97438 * 19 18 16 39 39 H 1.08001 * 126.64294 * 180.26139 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0006 5 6 3.6261 -0.6681 0.0015 6 6 4.8380 -1.4940 0.0018 7 8 4.7517 -2.7010 0.1317 8 7 6.0473 -0.9163 -0.1416 9 6 6.1594 0.5432 -0.2004 10 6 7.2493 -1.7480 -0.2388 11 6 7.4429 -2.1972 -1.6886 12 1 6.6743 -2.8933 -2.0243 13 6 7.7007 -1.0378 -2.6682 14 6 8.7705 -1.9445 -3.3031 15 7 8.8180 -2.6351 -1.9971 16 6 9.7584 -3.3805 -1.3376 17 1 9.5124 -3.8509 -0.3970 18 6 11.0282 -3.5316 -1.8778 19 7 11.3280 -2.9588 -3.0242 20 14 12.3113 -4.5479 -0.9777 21 1 11.7280 -5.0805 0.2798 22 1 12.7433 -5.6766 -1.8406 23 1 13.4829 -3.6939 -0.6564 24 6 2.3409 -1.1291 0.0077 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 0.8902 0.5134 27 1 -0.3632 -0.8898 0.5143 28 1 1.9769 2.1146 0.0005 29 1 6.1856 0.9466 0.8119 30 1 7.0754 0.8163 -0.7242 31 1 5.3007 0.9525 -0.7324 32 1 8.1169 -1.1714 0.0818 33 1 7.1383 -2.6233 0.4010 34 1 6.8589 -0.8246 -3.3270 35 1 8.1059 -0.1441 -2.1935 36 1 8.3933 -2.5676 -4.1141 37 1 9.6920 -1.4226 -3.5612 38 1 12.2154 -3.0641 -3.4015 39 1 2.0267 -2.1624 0.0139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085776258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:54 Heat of formation + Delta-G solvation = 44.362509 kcal Electronic energy + Delta-G solvation = -21659.153200 eV Core-core repulsion = 18378.032651 eV Total energy + Delta-G solvation = -3281.120550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.85230 -39.56271 -37.73914 -35.38468 -34.25569 -32.12731 -30.79751 -28.80113 -27.83733 -27.33731 -26.36049 -23.61616 -23.26423 -21.67149 -21.15751 -19.44378 -18.88246 -17.43061 -16.85710 -16.51666 -16.30915 -15.89352 -15.17760 -14.69482 -14.15833 -13.79011 -13.63579 -13.55904 -13.37347 -13.26673 -12.97963 -12.84610 -12.35438 -12.27256 -12.05382 -11.80266 -11.41105 -10.99657 -10.80219 -10.68592 -10.42739 -10.11509 -9.85194 -9.78536 -9.69308 -9.54679 -8.77618 -8.74394 -8.33704 -6.82959 -5.71908 -3.05316 1.02256 2.16418 2.59942 3.14202 3.28719 3.41610 3.47691 3.49835 4.40284 4.50955 4.58821 4.75281 5.05869 5.17312 5.30923 5.34665 5.42610 5.45289 5.54063 5.57144 5.60279 5.70047 5.74638 5.82492 5.95104 6.02560 6.19747 6.24390 6.29275 6.45228 6.58027 6.72811 6.78688 6.82986 7.29220 7.44264 7.52424 7.63710 8.03329 8.17760 9.09064 9.75466 10.65199 11.44361 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038882 B = 0.003675 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.957534 B = 7616.746211 C = 7837.144872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.193 4.193 3 C -0.024 4.024 4 O -0.155 6.155 5 C -0.062 4.062 6 C 0.593 3.407 7 O -0.519 6.519 8 N -0.595 5.595 9 C 0.074 3.926 10 C 0.117 3.883 11 C 0.129 3.871 12 H 0.048 0.952 13 C -0.158 4.158 14 C 0.156 3.844 15 N -0.601 5.601 16 C -0.221 4.221 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.910 3.090 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C -0.126 4.126 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.206 0.794 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.023 0.977 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.826 11.892 5.244 22.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.195 4.195 3 C -0.093 4.093 4 O -0.051 6.051 5 C -0.114 4.114 6 C 0.380 3.620 7 O -0.397 6.397 8 N -0.326 5.326 9 C -0.069 4.069 10 C -0.005 4.005 11 C 0.021 3.979 12 H 0.065 0.935 13 C -0.196 4.196 14 C 0.031 3.969 15 N -0.328 5.328 16 C -0.348 4.348 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.741 3.259 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.146 4.146 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.222 0.778 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.222 11.274 5.363 22.088 hybrid contribution 0.527 -0.639 0.323 0.889 sum -17.695 10.635 5.685 21.414 Atomic orbital electron populations 1.20173 0.88830 1.02708 1.02260 1.20463 0.97571 0.92495 1.08942 1.24228 0.80733 0.99927 1.04437 1.84322 1.28431 1.21839 1.70490 1.22215 0.96267 0.80414 1.12519 1.16709 0.81226 0.86247 0.77790 1.90891 1.85434 1.12750 1.50650 1.47748 1.06580 1.07695 1.70604 1.22070 1.03697 0.79161 1.01976 1.21899 0.84497 0.94974 0.99160 1.22542 0.89482 0.93573 0.92282 0.93453 1.23752 0.99262 0.97638 0.98935 1.22305 0.95997 0.90541 0.88098 1.46059 1.08944 1.61443 1.16349 1.19082 0.89725 1.23473 1.02555 0.90306 1.24771 0.97274 1.00987 0.97390 1.69830 1.20343 1.47733 1.18877 0.86072 0.81638 0.79469 0.78771 1.20419 1.21811 1.21754 1.21821 0.90605 1.00515 1.01694 0.91321 0.91585 0.91353 0.77767 0.92603 0.89983 0.90204 0.89334 0.90386 0.93423 0.90910 0.95925 0.90378 0.93795 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.01 0.37 -0.17 16 2 C -0.19 -1.87 6.14 -104.93 -0.64 -2.51 16 3 C -0.02 -0.21 12.00 29.63 0.36 0.15 16 4 O -0.16 -1.76 7.27 4.99 0.04 -1.73 16 5 C -0.06 -0.86 6.77 -36.80 -0.25 -1.11 16 6 C 0.59 10.01 7.60 -12.86 -0.10 9.91 16 7 O -0.52 -10.50 16.52 5.19 0.09 -10.41 16 8 N -0.59 -9.44 2.76 -183.14 -0.50 -9.94 16 9 C 0.07 0.89 9.34 59.85 0.56 1.45 16 10 C 0.12 2.21 5.28 -4.04 -0.02 2.19 16 11 C 0.13 2.77 4.55 -66.86 -0.30 2.47 16 12 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 13 C -0.16 -3.05 7.28 -25.79 -0.19 -3.23 16 14 C 0.16 3.76 7.64 -2.85 -0.02 3.73 16 15 N -0.60 -15.65 3.58 -169.72 -0.61 -16.26 16 16 C -0.22 -6.25 10.51 -15.06 -0.16 -6.41 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -27.52 11.32 55.49 0.63 -26.89 16 20 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C -0.13 -1.56 10.58 -39.40 -0.42 -1.98 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.21 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.96 6.57 -51.93 -0.34 0.62 16 31 H 0.08 0.89 5.34 -51.93 -0.28 0.61 16 32 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 33 H 0.08 1.59 7.53 -51.93 -0.39 1.20 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.31 6.81 -51.93 -0.35 0.96 16 36 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.08 2.05 6.97 -51.93 -0.36 1.69 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -33.48 326.41 -6.87 -40.35 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.49 Total: -1.63 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.91 Total: 4.15 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.48 Total: -53.09 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.12 Total: -12.14 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.48 -6.87 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085776258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.713 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds