Wall clock time and date at job start Tue Mar 31 2020 01:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35127 * 126.43947 * 2 1 4 4 O 1.33930 * 108.76702 * 179.97438 * 3 2 1 5 5 C 1.34917 * 109.38543 * 359.97438 * 4 3 2 6 6 C 1.46659 * 125.98701 * 179.97438 * 5 4 3 7 7 O 1.21700 * 119.99589 * 172.97116 * 6 5 4 8 8 N 1.34778 * 120.00223 * 352.97517 * 6 5 4 9 9 C 1.46499 * 119.99709 * 4.42831 * 8 6 5 10 10 C 1.46493 * 119.99810 * 184.43342 * 8 6 5 11 11 C 1.53002 * 109.47332 * 84.50738 * 10 8 6 12 12 H 1.08997 * 112.96492 * 292.03394 * 11 10 8 13 13 C 1.53951 * 113.76701 * 63.70711 * 11 10 8 14 14 C 1.53940 * 86.28858 * 137.90931 * 13 11 10 15 15 N 1.47583 * 113.77199 * 160.34668 * 11 10 8 16 16 C 1.36930 * 134.48793 * 41.07427 * 15 11 10 17 17 H 1.08002 * 120.00500 * 4.85037 * 16 15 11 18 18 C 1.38816 * 119.99927 * 184.85265 * 16 15 11 19 19 N 1.31617 * 119.99953 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47631 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47147 * 120.00468 * 20 18 16 23 23 H 1.48500 * 109.47042 * 240.00028 * 20 18 16 24 24 C 1.36542 * 108.01945 * 359.72818 * 5 4 3 25 25 H 1.08998 * 109.46841 * 90.02833 * 1 2 3 26 26 H 1.08994 * 109.47023 * 330.02544 * 1 2 3 27 27 H 1.09000 * 109.46529 * 210.02805 * 1 2 3 28 28 H 1.08004 * 125.61712 * 0.03307 * 3 2 1 29 29 H 1.09004 * 109.47087 * 84.00467 * 9 8 6 30 30 H 1.08997 * 109.46929 * 204.00299 * 9 8 6 31 31 H 1.08997 * 109.47373 * 324.00713 * 9 8 6 32 32 H 1.08997 * 109.46922 * 204.50753 * 10 8 6 33 33 H 1.08995 * 109.47304 * 324.50444 * 10 8 6 34 34 H 1.09003 * 113.74174 * 252.25339 * 13 11 10 35 35 H 1.09001 * 113.74203 * 23.45873 * 13 11 10 36 36 H 1.09008 * 113.76977 * 90.69636 * 14 13 11 37 37 H 1.09005 * 113.77377 * 221.97598 * 14 13 11 38 38 H 0.96994 * 119.99840 * 179.97438 * 19 18 16 39 39 H 1.08001 * 126.64294 * 180.26139 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0006 5 6 3.6261 -0.6681 0.0015 6 6 4.8380 -1.4940 0.0018 7 8 4.7517 -2.7010 0.1317 8 7 6.0473 -0.9163 -0.1416 9 6 6.1594 0.5432 -0.2004 10 6 7.2493 -1.7480 -0.2388 11 6 7.4429 -2.1972 -1.6886 12 1 6.6743 -2.8933 -2.0243 13 6 7.7007 -1.0378 -2.6682 14 6 8.7705 -1.9445 -3.3031 15 7 8.8180 -2.6351 -1.9971 16 6 9.7584 -3.3805 -1.3376 17 1 9.5124 -3.8509 -0.3970 18 6 11.0282 -3.5316 -1.8778 19 7 11.3280 -2.9588 -3.0242 20 14 12.3113 -4.5479 -0.9777 21 1 11.7280 -5.0805 0.2798 22 1 12.7433 -5.6766 -1.8406 23 1 13.4829 -3.6939 -0.6564 24 6 2.3409 -1.1291 0.0077 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 0.8902 0.5134 27 1 -0.3632 -0.8898 0.5143 28 1 1.9769 2.1146 0.0005 29 1 6.1856 0.9466 0.8119 30 1 7.0754 0.8163 -0.7242 31 1 5.3007 0.9525 -0.7324 32 1 8.1169 -1.1714 0.0818 33 1 7.1383 -2.6233 0.4010 34 1 6.8589 -0.8246 -3.3270 35 1 8.1059 -0.1441 -2.1935 36 1 8.3933 -2.5676 -4.1141 37 1 9.6920 -1.4226 -3.5612 38 1 12.2154 -3.0641 -3.4015 39 1 2.0267 -2.1624 0.0139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085776258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:53 Heat of formation + Delta-G solvation = 23.012316 kcal Electronic energy + Delta-G solvation = -21660.079014 eV Core-core repulsion = 18378.032651 eV Total energy + Delta-G solvation = -3282.046364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.70661 -40.93676 -39.46447 -36.68924 -35.07238 -34.23233 -31.80907 -30.08608 -29.87135 -28.08199 -27.49117 -25.35873 -24.91671 -23.00115 -22.03142 -21.02526 -20.23273 -18.75351 -18.36014 -17.59842 -17.46872 -17.19370 -16.82273 -16.33598 -15.86622 -15.27029 -15.00753 -14.50109 -14.20400 -14.18189 -14.06667 -13.92975 -13.86265 -13.60510 -13.35543 -13.13037 -12.90388 -12.57174 -12.52270 -12.31954 -12.26136 -11.82511 -11.58970 -11.42981 -11.31653 -10.85457 -10.70551 -9.83884 -9.46651 -8.91458 -7.89617 -5.24662 0.04593 1.37230 1.44567 1.45698 1.55451 1.58570 2.01574 2.14407 2.48176 3.29269 3.37775 3.52124 3.84894 3.85324 4.07004 4.13997 4.23983 4.28680 4.36063 4.50216 4.62131 4.69168 4.74681 4.82493 4.89327 4.91342 4.96014 5.01089 5.04430 5.08012 5.16217 5.21998 5.38784 5.55835 5.56037 5.68803 5.89766 5.94934 6.27894 6.91280 6.92817 7.60478 8.56436 9.26361 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038882 B = 0.003675 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.957534 B = 7616.746211 C = 7837.144872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.004 3.996 4 O -0.155 6.155 5 C -0.094 4.094 6 C 0.589 3.411 7 O -0.569 6.569 8 N -0.594 5.594 9 C 0.071 3.929 10 C 0.134 3.866 11 C 0.129 3.871 12 H 0.028 0.972 13 C -0.122 4.122 14 C 0.147 3.853 15 N -0.627 5.627 16 C -0.232 4.232 17 H 0.077 0.923 18 C -0.064 4.064 19 N -0.950 5.950 20 Si 0.976 3.024 21 H -0.269 1.269 22 H -0.294 1.294 23 H -0.287 1.287 24 C -0.128 4.128 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.255 0.745 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.010 0.990 37 H 0.054 0.946 38 H 0.249 0.751 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.599 14.488 6.058 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C -0.065 4.065 4 O -0.051 6.051 5 C -0.146 4.146 6 C 0.379 3.621 7 O -0.451 6.451 8 N -0.324 5.324 9 C -0.070 4.070 10 C 0.010 3.990 11 C 0.022 3.978 12 H 0.045 0.955 13 C -0.160 4.160 14 C 0.022 3.978 15 N -0.354 5.354 16 C -0.361 4.361 17 H 0.095 0.905 18 C -0.257 4.257 19 N -0.599 5.599 20 Si 0.805 3.195 21 H -0.193 1.193 22 H -0.221 1.221 23 H -0.213 1.213 24 C -0.149 4.149 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.271 0.729 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.028 0.972 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.025 13.913 6.189 25.157 hybrid contribution 0.914 -1.390 0.061 1.665 sum -19.111 12.523 6.250 23.688 Atomic orbital electron populations 1.20251 0.86639 1.03814 1.03078 1.20816 0.99109 0.91586 1.09322 1.25223 0.79252 1.01650 1.00414 1.84283 1.29985 1.20256 1.70557 1.21546 0.95060 0.81524 1.16477 1.17098 0.82192 0.86080 0.76744 1.90851 1.86321 1.14979 1.52947 1.47756 1.05350 1.09019 1.70256 1.22297 1.04669 0.76514 1.03492 1.21447 0.86046 0.94816 0.96680 1.22590 0.86804 0.93879 0.94562 0.95464 1.23508 0.98190 0.96706 0.97618 1.22293 0.96563 0.91347 0.87582 1.46445 1.10381 1.61328 1.17243 1.19392 0.90598 1.23389 1.02672 0.90481 1.25582 0.99226 1.02502 0.98351 1.70005 1.20511 1.49150 1.20273 0.85044 0.78960 0.77695 0.77834 1.19300 1.22150 1.21336 1.22052 0.90995 1.01319 1.00507 0.90586 0.89199 0.91625 0.72908 0.90858 0.89337 0.88740 0.88896 0.92779 0.90518 0.88860 0.97204 0.92773 0.94225 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.39 71.24 0.74 -0.06 16 2 C -0.21 -3.38 6.14 -20.06 -0.12 -3.50 16 3 C 0.00 0.05 12.00 67.10 0.81 0.85 16 4 O -0.16 -3.03 7.27 -5.07 -0.04 -3.07 16 5 C -0.09 -2.52 6.77 24.07 0.16 -2.36 16 6 C 0.59 20.05 7.60 86.44 0.66 20.71 16 7 O -0.57 -24.10 16.52 -4.35 -0.07 -24.17 16 8 N -0.59 -18.44 2.76 -851.55 -2.35 -20.79 16 9 C 0.07 1.54 9.34 127.77 1.19 2.73 16 10 C 0.13 5.09 5.28 86.38 0.46 5.55 16 11 C 0.13 5.59 4.55 45.09 0.21 5.79 16 12 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 13 C -0.12 -4.58 7.28 31.25 0.23 -4.35 16 14 C 0.15 7.23 7.64 86.44 0.66 7.89 16 15 N -0.63 -33.33 3.58 -690.88 -2.48 -35.81 16 16 C -0.23 -13.43 10.51 84.04 0.88 -12.55 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 18 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 19 N -0.95 -58.09 11.32 21.65 0.25 -57.84 16 20 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 C -0.13 -3.07 10.58 22.39 0.24 -2.83 16 25 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.26 0.58 8.06 -2.91 -0.02 0.55 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.09 1.81 6.57 -2.39 -0.02 1.79 16 31 H 0.09 1.80 5.34 -2.39 -0.01 1.79 16 32 H 0.09 3.43 8.03 -2.39 -0.02 3.41 16 33 H 0.05 2.30 7.53 -2.39 -0.02 2.28 16 34 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 35 H 0.09 3.14 6.81 -2.39 -0.02 3.12 16 36 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.05 2.91 6.97 -2.38 -0.02 2.89 16 38 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -75.84 326.41 4.96 -70.88 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.05 Total: 7.25 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.57 Total: 14.64 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.58 Total: -114.44 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.11 Total: -27.24 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -75.84 4.96 -70.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085776258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.890 kcal (2) G-P(sol) polarization free energy of solvation -75.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds