Wall clock time and date at job start Tue Mar 31 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34181 * 127.02283 * 2 1 4 4 O 1.34218 * 109.12260 * 180.27195 * 3 2 1 5 5 C 1.33655 * 110.90901 * 359.71748 * 4 3 2 6 6 C 1.36419 * 108.39686 * 359.97438 * 5 4 3 7 7 C 1.47379 * 127.19089 * 180.02562 * 6 5 4 8 8 O 1.21606 * 119.99839 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99728 * 0.03015 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.85054 * 45.33091 * 11 10 9 13 13 C 1.53782 * 113.61871 * 176.53036 * 11 10 9 14 14 C 1.53777 * 87.08471 * 139.98088 * 13 11 10 15 15 H 1.08997 * 113.61206 * 89.19800 * 14 13 11 16 16 N 1.46492 * 113.61328 * 220.01992 * 14 13 11 17 17 C 1.36941 * 120.00043 * 204.99883 * 16 14 13 18 18 H 1.07996 * 119.99957 * 0.02562 * 17 16 14 19 19 C 1.38817 * 120.00112 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99750 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46821 * 90.00077 * 21 19 17 23 23 H 1.48494 * 109.46829 * 209.99943 * 21 19 17 24 24 H 1.48498 * 109.46969 * 330.00351 * 21 19 17 25 25 C 1.53785 * 113.61570 * 274.13670 * 11 10 9 26 26 H 1.09002 * 109.46644 * 270.19204 * 1 2 3 27 27 H 1.08996 * 109.47467 * 30.19071 * 1 2 3 28 28 H 1.09002 * 109.47219 * 150.19404 * 1 2 3 29 29 H 1.07998 * 125.43623 * 359.97438 * 3 2 1 30 30 H 1.07994 * 125.80118 * 180.02562 * 5 4 3 31 31 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 34 34 H 1.09011 * 113.61074 * 254.53256 * 13 11 10 35 35 H 1.09000 * 113.61044 * 25.34248 * 13 11 10 36 36 H 0.97001 * 120.00662 * 24.99896 * 16 14 13 37 37 H 0.97004 * 119.99931 * 179.97438 * 20 19 17 38 38 H 1.09000 * 113.61195 * 334.56762 * 25 11 10 39 39 H 1.09001 * 113.61520 * 105.46896 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0060 5 6 3.6623 -0.6759 -0.0039 6 6 2.3922 -1.1738 0.0043 7 6 1.9914 -2.5920 0.0098 8 8 0.8125 -2.8906 0.0165 9 7 2.9312 -3.5579 0.0073 10 6 2.5327 -4.9677 0.0122 11 6 3.7820 -5.8509 0.0074 12 1 4.5390 -5.5172 0.7172 13 6 3.4737 -7.3548 0.0973 14 6 4.6011 -7.5671 -0.9268 15 1 5.5827 -7.7043 -0.4733 16 7 4.2934 -8.5836 -1.9358 17 6 5.3090 -9.2473 -2.5709 18 1 6.3367 -9.0217 -2.3275 19 6 5.0175 -10.2109 -3.5267 20 7 3.7650 -10.4869 -3.8221 21 14 6.4030 -11.1168 -4.3924 22 1 6.7503 -12.3396 -3.6249 23 1 5.9667 -11.4977 -5.7598 24 1 7.5931 -10.2330 -4.4806 25 6 4.3364 -6.1263 -1.4003 26 1 -0.3633 0.0034 1.0277 27 1 -0.3634 0.8882 -0.5168 28 1 -0.3634 -0.8917 -0.5108 29 1 1.9894 2.1011 -0.0004 30 1 4.5701 -1.2608 -0.0073 31 1 3.8715 -3.3198 0.0016 32 1 1.9437 -5.1757 0.9055 33 1 1.9351 -5.1795 -0.8745 34 1 3.6855 -7.7862 1.0757 35 1 2.4855 -7.6210 -0.2777 36 1 3.3704 -8.7866 -2.1542 37 1 3.5613 -11.1600 -4.4903 38 1 3.5851 -6.0563 -2.1869 39 1 5.2438 -5.5674 -1.6293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086169579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:23 Heat of formation + Delta-G solvation = 0.728104 kcal Electronic energy + Delta-G solvation = -20587.010641 eV Core-core repulsion = 17303.997961 eV Total energy + Delta-G solvation = -3283.012680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.82500 -39.62090 -38.37229 -34.75655 -34.04244 -33.33171 -31.13397 -30.11142 -27.49205 -27.30560 -25.11105 -24.16553 -23.25960 -21.20621 -20.66249 -20.24282 -19.09390 -18.16524 -17.05410 -16.48637 -16.10555 -16.00872 -15.27216 -15.07745 -14.67632 -14.57357 -13.73243 -13.61459 -13.40265 -13.34601 -13.18125 -12.89390 -12.73132 -11.93254 -11.84594 -11.72764 -11.41786 -11.24388 -10.85613 -10.54086 -10.29056 -10.16077 -9.92689 -9.84339 -9.79336 -9.50743 -9.06463 -8.94649 -8.87825 -6.97593 -5.79374 -3.08340 1.10370 1.77809 2.64091 3.09667 3.25994 3.41867 3.46914 3.48852 4.23891 4.37875 4.57230 4.75147 4.94492 4.96139 5.06744 5.15736 5.22068 5.45397 5.48154 5.50792 5.59367 5.66894 5.78481 5.81014 5.84903 5.92504 6.07826 6.21139 6.25583 6.30059 6.34420 6.43332 6.57337 6.67012 6.80949 7.09739 7.44193 7.67806 8.16292 8.39212 9.50209 10.08551 10.42596 11.43024 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032967 B = 0.002755 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.139540 B =10160.698563 C =10400.890249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.132 4.132 3 C -0.049 4.049 4 O -0.173 6.173 5 C 0.020 3.980 6 C -0.232 4.232 7 C 0.583 3.417 8 O -0.536 6.536 9 N -0.721 5.721 10 C 0.133 3.867 11 C -0.128 4.128 12 H 0.088 0.912 13 C -0.142 4.142 14 C 0.166 3.834 15 H 0.075 0.925 16 N -0.713 5.713 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.162 4.162 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.207 0.793 30 H 0.211 0.789 31 H 0.397 0.603 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.078 0.922 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 22.623 10.333 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.115 4.115 4 O -0.068 6.068 5 C -0.050 4.050 6 C -0.236 4.236 7 C 0.370 3.630 8 O -0.414 6.414 9 N -0.372 5.372 10 C 0.011 3.989 11 C -0.147 4.147 12 H 0.106 0.894 13 C -0.182 4.182 14 C 0.054 3.946 15 H 0.093 0.907 16 N -0.351 5.351 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.203 4.203 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.224 0.776 30 H 0.228 0.772 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.853 22.458 10.236 24.750 hybrid contribution 0.813 -0.547 -0.615 1.157 sum -1.040 21.911 9.621 23.953 Atomic orbital electron populations 1.20242 0.88310 1.03290 1.02562 1.21451 0.97353 0.90400 1.04215 1.23718 0.79680 0.99702 1.08416 1.83781 1.29671 1.22353 1.70969 1.24445 0.98845 0.81147 1.00566 1.21504 0.93376 0.94464 1.14273 1.17265 0.85674 0.83685 0.76400 1.90769 1.17351 1.83309 1.49934 1.45897 1.09211 1.06769 1.75354 1.21458 0.97107 0.78099 1.02282 1.22647 0.96483 0.95712 0.99855 0.89390 1.23445 1.01371 0.92920 1.00442 1.21544 0.95736 0.87804 0.89523 0.90677 1.42417 1.06702 1.42518 1.43428 1.19300 0.88282 1.14499 1.15502 0.91105 1.24777 0.96252 0.99871 1.00031 1.69661 1.16334 1.35935 1.36060 0.86188 0.81200 0.79840 0.78949 1.21678 1.21753 1.20742 1.23986 1.00285 1.01406 0.94600 0.91209 0.91742 0.89827 0.77645 0.77218 0.76935 0.91610 0.91060 0.91966 0.90067 0.78048 0.93424 0.90324 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.00 36.00 0.36 -0.47 16 2 C -0.13 -1.37 6.37 -102.49 -0.65 -2.02 16 3 C -0.05 -0.39 11.96 29.30 0.35 -0.04 16 4 O -0.17 -1.49 10.52 7.64 0.08 -1.41 16 5 C 0.02 0.17 11.61 30.08 0.35 0.52 16 6 C -0.23 -2.58 6.31 -103.27 -0.65 -3.24 16 7 C 0.58 7.84 7.81 -12.54 -0.10 7.75 16 8 O -0.54 -9.14 15.41 5.27 0.08 -9.06 16 9 N -0.72 -8.20 5.55 -61.40 -0.34 -8.54 16 10 C 0.13 1.74 5.50 -4.04 -0.02 1.72 16 11 C -0.13 -1.66 3.75 -89.81 -0.34 -1.99 16 12 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 13 C -0.14 -2.22 7.40 -25.92 -0.19 -2.41 16 14 C 0.17 3.16 4.48 -67.03 -0.30 2.86 16 15 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 16 N -0.71 -17.69 5.40 -52.55 -0.28 -17.98 16 17 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 21 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.16 -2.61 7.45 -25.82 -0.19 -2.80 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.99 6.92 -51.93 -0.36 0.64 16 29 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.21 0.90 7.47 -52.49 -0.39 0.51 16 31 H 0.40 3.32 7.44 -40.82 -0.30 3.01 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 34 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 36 H 0.39 10.21 7.92 -40.82 -0.32 9.89 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -33.77 333.71 -6.91 -40.68 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.54 Total: 9.00 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.63 Total: -7.50 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.10 Total: -53.95 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.16 Total: -10.47 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.77 -6.91 -40.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086169579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.403 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds