Wall clock time and date at job start Tue Mar 31 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34181 * 127.02283 * 2 1 4 4 O 1.34218 * 109.12260 * 180.27195 * 3 2 1 5 5 C 1.33655 * 110.90901 * 359.71748 * 4 3 2 6 6 C 1.36419 * 108.39686 * 359.97438 * 5 4 3 7 7 C 1.47379 * 127.19089 * 180.02562 * 6 5 4 8 8 O 1.21606 * 119.99839 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99728 * 0.03015 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.85054 * 45.33091 * 11 10 9 13 13 C 1.53782 * 113.61871 * 176.53036 * 11 10 9 14 14 C 1.53777 * 87.08471 * 139.98088 * 13 11 10 15 15 H 1.08997 * 113.61206 * 89.19800 * 14 13 11 16 16 N 1.46492 * 113.61328 * 220.01992 * 14 13 11 17 17 C 1.36941 * 120.00043 * 204.99883 * 16 14 13 18 18 H 1.07996 * 119.99957 * 0.02562 * 17 16 14 19 19 C 1.38817 * 120.00112 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99750 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46821 * 90.00077 * 21 19 17 23 23 H 1.48494 * 109.46829 * 209.99943 * 21 19 17 24 24 H 1.48498 * 109.46969 * 330.00351 * 21 19 17 25 25 C 1.53785 * 113.61570 * 274.13670 * 11 10 9 26 26 H 1.09002 * 109.46644 * 270.19204 * 1 2 3 27 27 H 1.08996 * 109.47467 * 30.19071 * 1 2 3 28 28 H 1.09002 * 109.47219 * 150.19404 * 1 2 3 29 29 H 1.07998 * 125.43623 * 359.97438 * 3 2 1 30 30 H 1.07994 * 125.80118 * 180.02562 * 5 4 3 31 31 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 33 33 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 34 34 H 1.09011 * 113.61074 * 254.53256 * 13 11 10 35 35 H 1.09000 * 113.61044 * 25.34248 * 13 11 10 36 36 H 0.97001 * 120.00662 * 24.99896 * 16 14 13 37 37 H 0.97004 * 119.99931 * 179.97438 * 20 19 17 38 38 H 1.09000 * 113.61195 * 334.56762 * 25 11 10 39 39 H 1.09001 * 113.61520 * 105.46896 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0060 5 6 3.6623 -0.6759 -0.0039 6 6 2.3922 -1.1738 0.0043 7 6 1.9914 -2.5920 0.0098 8 8 0.8125 -2.8906 0.0165 9 7 2.9312 -3.5579 0.0073 10 6 2.5327 -4.9677 0.0122 11 6 3.7820 -5.8509 0.0074 12 1 4.5390 -5.5172 0.7172 13 6 3.4737 -7.3548 0.0973 14 6 4.6011 -7.5671 -0.9268 15 1 5.5827 -7.7043 -0.4733 16 7 4.2934 -8.5836 -1.9358 17 6 5.3090 -9.2473 -2.5709 18 1 6.3367 -9.0217 -2.3275 19 6 5.0175 -10.2109 -3.5267 20 7 3.7650 -10.4869 -3.8221 21 14 6.4030 -11.1168 -4.3924 22 1 6.7503 -12.3396 -3.6249 23 1 5.9667 -11.4977 -5.7598 24 1 7.5931 -10.2330 -4.4806 25 6 4.3364 -6.1263 -1.4003 26 1 -0.3633 0.0034 1.0277 27 1 -0.3634 0.8882 -0.5168 28 1 -0.3634 -0.8917 -0.5108 29 1 1.9894 2.1011 -0.0004 30 1 4.5701 -1.2608 -0.0073 31 1 3.8715 -3.3198 0.0016 32 1 1.9437 -5.1757 0.9055 33 1 1.9351 -5.1795 -0.8745 34 1 3.6855 -7.7862 1.0757 35 1 2.4855 -7.6210 -0.2777 36 1 3.3704 -8.7866 -2.1542 37 1 3.5613 -11.1600 -4.4903 38 1 3.5851 -6.0563 -2.1869 39 1 5.2438 -5.5674 -1.6293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086169579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:23 Heat of formation + Delta-G solvation = -23.089727 kcal Electronic energy + Delta-G solvation = -20588.043459 eV Core-core repulsion = 17303.997961 eV Total energy + Delta-G solvation = -3284.045498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -43.49222 -40.72836 -39.66459 -36.08635 -35.05274 -34.77249 -32.38412 -31.54865 -28.59193 -28.13535 -26.45293 -25.92088 -24.34207 -22.47748 -21.40331 -21.23116 -20.40997 -19.14787 -18.85525 -17.20132 -17.14799 -17.00916 -16.49214 -16.34726 -15.90176 -15.72530 -15.30586 -14.99843 -14.46830 -14.31619 -14.23073 -13.96789 -13.45063 -13.39421 -13.23139 -13.02114 -12.92244 -12.66398 -12.44930 -12.18400 -12.07387 -11.61094 -11.55178 -11.14857 -10.96228 -10.79797 -10.60612 -10.07287 -9.59745 -8.97295 -7.94202 -5.22584 0.37441 1.08475 1.47606 1.49401 1.57724 2.01747 2.19445 2.32435 2.57213 3.37804 3.60980 3.66400 3.73873 3.75700 3.90666 4.11774 4.26390 4.34582 4.37458 4.43083 4.51760 4.55879 4.76355 4.78949 4.95164 4.98220 4.99644 5.04379 5.06858 5.07356 5.22923 5.35122 5.42371 5.51161 5.53668 5.74197 6.00886 6.28231 6.55283 7.21182 7.33509 8.12265 8.33588 9.29511 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032967 B = 0.002755 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.139540 B =10160.698563 C =10400.890249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.169 4.169 3 C -0.032 4.032 4 O -0.174 6.174 5 C 0.047 3.953 6 C -0.272 4.272 7 C 0.579 3.421 8 O -0.584 6.584 9 N -0.708 5.708 10 C 0.140 3.860 11 C -0.094 4.094 12 H 0.126 0.874 13 C -0.138 4.138 14 C 0.143 3.857 15 H 0.083 0.917 16 N -0.731 5.731 17 C -0.241 4.241 18 H 0.080 0.920 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.973 3.027 22 H -0.287 1.287 23 H -0.299 1.299 24 H -0.267 1.267 25 C -0.154 4.154 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.244 0.756 30 H 0.250 0.750 31 H 0.415 0.585 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.053 0.947 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 24.898 11.515 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.171 4.171 3 C -0.097 4.097 4 O -0.068 6.068 5 C -0.023 4.023 6 C -0.276 4.276 7 C 0.368 3.632 8 O -0.466 6.466 9 N -0.359 5.359 10 C 0.016 3.984 11 C -0.113 4.113 12 H 0.143 0.857 13 C -0.177 4.177 14 C 0.034 3.966 15 H 0.101 0.899 16 N -0.368 5.368 17 C -0.373 4.373 18 H 0.098 0.902 19 C -0.273 4.273 20 N -0.624 5.624 21 Si 0.803 3.197 22 H -0.214 1.214 23 H -0.226 1.226 24 H -0.191 1.191 25 C -0.195 4.195 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.260 0.740 30 H 0.266 0.734 31 H 0.252 0.748 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.203 0.797 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.721 24.792 11.463 27.324 hybrid contribution 0.053 -1.162 -0.919 1.483 sum 0.773 23.630 10.545 25.887 Atomic orbital electron populations 1.20171 0.88578 1.02828 1.02416 1.21709 0.97792 0.91224 1.06356 1.24324 0.78865 1.00606 1.05928 1.83831 1.29963 1.22465 1.70526 1.25088 0.98941 0.81062 0.97225 1.21479 0.95219 0.93334 1.17593 1.17676 0.85182 0.84932 0.75396 1.90743 1.19376 1.84147 1.52308 1.45701 1.09986 1.05675 1.74587 1.21235 0.96855 0.79202 1.01116 1.22477 0.96741 0.93809 0.98261 0.85650 1.23334 0.99251 0.95112 1.00051 1.21998 0.97312 0.87750 0.89559 0.89901 1.42656 1.05483 1.43903 1.44797 1.19746 0.89268 1.13646 1.14635 0.90165 1.25614 0.98459 1.01572 1.01654 1.69829 1.18437 1.37021 1.37150 0.85133 0.78792 0.78662 0.77161 1.21423 1.22557 1.19132 1.23757 1.00511 0.99367 0.95816 0.91289 0.89291 0.93086 0.74021 0.73385 0.74822 0.91628 0.93689 0.90200 0.91681 0.79726 0.94133 0.92857 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 10.00 71.24 0.71 -0.89 16 2 C -0.17 -3.32 6.37 -18.49 -0.12 -3.43 16 3 C -0.03 -0.42 11.96 66.89 0.80 0.38 16 4 O -0.17 -2.39 10.52 4.41 0.05 -2.34 16 5 C 0.05 0.62 11.61 67.40 0.78 1.40 16 6 C -0.27 -5.72 6.31 -18.99 -0.12 -5.84 16 7 C 0.58 15.45 7.81 86.65 0.68 16.13 16 8 O -0.58 -20.81 15.41 -4.05 -0.06 -20.87 16 9 N -0.71 -14.90 5.55 -466.42 -2.59 -17.48 16 10 C 0.14 3.51 5.50 86.38 0.47 3.98 16 11 C -0.09 -2.20 3.75 -10.27 -0.04 -2.24 16 12 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 13 C -0.14 -4.14 7.40 31.12 0.23 -3.91 16 14 C 0.14 5.29 4.48 45.58 0.20 5.50 16 15 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 16 N -0.73 -36.70 5.40 -320.19 -1.73 -38.43 16 17 C -0.24 -13.27 9.97 84.03 0.84 -12.43 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 20 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 21 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 C -0.15 -4.73 7.45 31.18 0.23 -4.50 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.31 6.92 -2.39 -0.02 1.29 16 29 H 0.24 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.25 0.92 7.47 -2.91 -0.02 0.90 16 31 H 0.41 5.51 7.44 -92.71 -0.69 4.82 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.39 7.87 -2.39 -0.02 1.37 16 34 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 36 H 0.37 20.37 7.92 -92.71 -0.73 19.64 16 37 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.05 1.93 7.92 -2.39 -0.02 1.91 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -76.69 333.71 2.77 -73.92 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.35 Total: 27.34 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 5.14 Total: -10.06 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -4.03 Total: -116.07 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.02 Total: -23.21 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -76.69 2.77 -73.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086169579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.830 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds