Wall clock time and date at job start Tue Mar 31 2020 01:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.34182 * 127.02530 * 2 1 4 4 O 1.34213 * 109.12688 * 180.27155 * 3 2 1 5 5 C 1.33650 * 110.90885 * 359.70702 * 4 3 2 6 6 C 1.36420 * 108.39609 * 0.02562 * 5 4 3 7 7 C 1.47376 * 127.19163 * 179.97438 * 6 5 4 8 8 O 1.21613 * 119.99986 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00037 * 0.02761 * 7 6 5 10 10 C 1.46509 * 120.00153 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47135 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.84848 * 316.19429 * 11 10 9 13 13 C 1.53777 * 113.61574 * 87.50177 * 11 10 9 14 14 C 1.53774 * 87.08381 * 139.97935 * 13 11 10 15 15 H 1.08997 * 113.69521 * 220.00978 * 14 13 11 16 16 N 1.46505 * 113.61385 * 89.11575 * 14 13 11 17 17 C 1.36931 * 119.99788 * 107.50497 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31617 * 119.99873 * 180.27450 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.27770 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00079 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99901 * 21 19 17 25 25 C 1.53783 * 113.61362 * 185.00104 * 11 10 9 26 26 H 1.09007 * 109.47335 * 270.19805 * 1 2 3 27 27 H 1.09000 * 109.47665 * 30.19857 * 1 2 3 28 28 H 1.09000 * 109.47406 * 150.20160 * 1 2 3 29 29 H 1.08004 * 125.43489 * 359.97438 * 3 2 1 30 30 H 1.07998 * 125.80155 * 180.02562 * 5 4 3 31 31 H 0.97001 * 120.00080 * 359.97438 * 9 7 6 32 32 H 1.08997 * 109.46757 * 59.99292 * 10 9 7 33 33 H 1.09000 * 109.46687 * 299.99338 * 10 9 7 34 34 H 1.09001 * 113.61290 * 25.43194 * 13 11 10 35 35 H 1.09000 * 113.61684 * 254.53217 * 13 11 10 36 36 H 0.97000 * 119.99792 * 287.50291 * 16 14 13 37 37 H 0.97000 * 120.00553 * 180.02562 * 20 19 17 38 38 H 1.08995 * 113.61832 * 105.46763 * 25 11 10 39 39 H 1.09003 * 113.61236 * 334.56682 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0060 5 6 3.6623 -0.6759 -0.0037 6 6 2.3922 -1.1738 0.0035 7 6 1.9913 -2.5920 0.0078 8 8 0.8124 -2.8906 0.0138 9 7 2.9312 -3.5579 0.0051 10 6 2.5327 -4.9678 0.0088 11 6 3.7820 -5.8509 0.0040 12 1 4.5428 -5.5041 -0.6953 13 6 4.3272 -6.1545 1.4095 14 6 4.5960 -7.5841 0.9108 15 1 4.3637 -8.3552 1.6452 16 7 5.9191 -7.7553 0.3053 17 6 6.8920 -8.4513 0.9716 18 1 6.6840 -8.8745 1.9433 19 6 8.1438 -8.6185 0.3954 20 7 9.0773 -9.2921 1.0334 21 14 8.5036 -7.8873 -1.2855 22 1 9.0366 -6.5108 -1.1228 23 1 9.5077 -8.7274 -1.9862 24 1 7.2521 -7.8423 -2.0838 25 6 3.4743 -7.3529 -0.1155 26 1 -0.3634 0.0036 1.0277 27 1 -0.3634 0.8882 -0.5169 28 1 -0.3634 -0.8918 -0.5107 29 1 1.9894 2.1011 -0.0004 30 1 4.5702 -1.2607 -0.0070 31 1 3.8715 -3.3197 0.0000 32 1 1.9355 -5.1788 -0.8783 33 1 1.9433 -5.1763 0.9017 34 1 3.5707 -6.1003 2.1923 35 1 5.2329 -5.6004 1.6557 36 1 6.1058 -7.3756 -0.5676 37 1 9.9522 -9.4086 0.6311 38 1 3.6914 -7.7661 -1.1004 39 1 2.4846 -7.6262 0.2505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086448796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:28 Heat of formation + Delta-G solvation = 6.161406 kcal Electronic energy + Delta-G solvation = -20810.741576 eV Core-core repulsion = 17527.964502 eV Total energy + Delta-G solvation = -3282.777074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.63 seconds Orbital eigenvalues (eV) -42.83291 -39.70194 -38.57449 -34.84078 -34.05897 -33.30854 -31.21420 -30.49000 -27.61075 -27.44359 -25.21990 -24.05386 -23.07853 -21.79894 -20.72199 -20.28437 -18.76742 -18.07932 -17.67253 -16.49271 -16.13893 -16.01381 -15.32207 -15.06998 -14.81752 -14.43405 -13.81567 -13.67310 -13.52901 -13.41973 -13.24027 -12.83008 -12.74954 -12.54209 -12.07995 -11.77071 -11.60487 -11.39868 -10.96237 -10.56059 -10.38674 -10.18037 -9.95928 -9.81250 -9.69919 -9.56547 -9.11371 -8.97104 -8.94420 -7.34916 -5.83739 -3.20168 1.09470 1.76241 2.64225 3.06718 3.22236 3.30977 3.33194 3.39787 4.23842 4.36359 4.51862 4.72692 4.87366 4.89668 4.98056 5.08323 5.15595 5.34402 5.39237 5.46704 5.48031 5.58642 5.64802 5.71249 5.76888 5.82849 5.88857 6.08955 6.19480 6.20237 6.29644 6.44888 6.57780 6.66593 6.69789 6.84681 7.40296 7.94085 8.11695 8.35917 9.13542 9.85695 10.04899 11.34371 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024648 B = 0.003366 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.711787 B = 8316.810218 C = 9049.381959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.133 4.133 3 C -0.049 4.049 4 O -0.172 6.172 5 C 0.023 3.977 6 C -0.234 4.234 7 C 0.584 3.416 8 O -0.538 6.538 9 N -0.722 5.722 10 C 0.133 3.867 11 C -0.124 4.124 12 H 0.089 0.911 13 C -0.167 4.167 14 C 0.172 3.828 15 H 0.071 0.929 16 N -0.730 5.730 17 C -0.247 4.247 18 H 0.092 0.908 19 C 0.006 3.994 20 N -0.932 5.932 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.149 4.149 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.207 0.793 30 H 0.212 0.788 31 H 0.399 0.601 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 19.533 -3.098 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C -0.115 4.115 4 O -0.067 6.067 5 C -0.048 4.048 6 C -0.238 4.238 7 C 0.371 3.629 8 O -0.417 6.417 9 N -0.373 5.373 10 C 0.010 3.990 11 C -0.143 4.143 12 H 0.108 0.892 13 C -0.207 4.207 14 C 0.061 3.939 15 H 0.089 0.911 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.110 0.890 19 C -0.190 4.190 20 N -0.579 5.579 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.188 4.188 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.224 0.776 30 H 0.228 0.772 31 H 0.233 0.767 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.005 19.317 -2.931 24.635 hybrid contribution 0.848 0.560 -1.225 1.592 sum -14.157 19.877 -4.156 24.754 Atomic orbital electron populations 1.20232 0.88333 1.03171 1.02585 1.21435 0.97313 0.90395 1.04359 1.23724 0.79704 0.99710 1.08346 1.83789 1.29651 1.22357 1.70867 1.24492 0.98913 0.81148 1.00208 1.21476 0.93364 0.94414 1.14572 1.17264 0.85617 0.83707 0.76267 1.90756 1.17348 1.83362 1.50198 1.45922 1.09384 1.06719 1.75264 1.21488 0.97116 0.78360 1.02060 1.22762 0.96243 0.95367 0.99905 0.89242 1.23862 1.00510 1.01871 0.94495 1.21004 0.84883 0.94214 0.93828 0.91051 1.42517 1.09088 1.65212 1.20201 1.19116 0.90412 1.26305 1.01874 0.89013 1.24687 0.96163 1.00111 0.98081 1.69694 1.04412 1.45237 1.38548 0.86564 0.77673 0.78965 0.85401 1.21056 1.21622 1.20328 1.23466 1.00159 0.93863 1.01332 0.91190 0.91772 0.89922 0.77644 0.77162 0.76728 0.91639 0.91217 0.90872 0.91303 0.80528 0.92952 0.91403 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.00 36.00 0.36 -0.44 16 2 C -0.13 -1.37 6.37 -102.50 -0.65 -2.03 16 3 C -0.05 -0.40 11.96 29.30 0.35 -0.05 16 4 O -0.17 -1.56 10.52 7.66 0.08 -1.48 16 5 C 0.02 0.20 11.61 30.08 0.35 0.55 16 6 C -0.23 -2.63 6.31 -103.28 -0.65 -3.28 16 7 C 0.58 7.73 7.81 -12.54 -0.10 7.63 16 8 O -0.54 -8.83 15.41 5.27 0.08 -8.75 16 9 N -0.72 -8.25 5.55 -61.39 -0.34 -8.60 16 10 C 0.13 1.63 5.51 -4.04 -0.02 1.61 16 11 C -0.12 -1.65 3.63 -89.81 -0.33 -1.98 16 12 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.17 -2.53 7.43 -25.92 -0.19 -2.72 16 14 C 0.17 3.12 4.56 -67.12 -0.31 2.81 16 15 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 16 N -0.73 -16.51 5.11 -52.64 -0.27 -16.78 16 17 C -0.25 -6.78 10.45 -15.06 -0.16 -6.94 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -28.75 13.97 55.49 0.78 -27.97 16 21 Si 0.88 21.44 27.74 -169.99 -4.72 16.72 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.31 6.51 56.52 0.37 -5.94 16 25 C -0.15 -2.15 7.39 -25.92 -0.19 -2.35 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.94 6.92 -51.93 -0.36 0.58 16 29 H 0.21 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.21 1.11 7.47 -52.49 -0.39 0.72 16 31 H 0.40 3.66 7.44 -40.82 -0.30 3.36 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 34 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.36 8.00 5.76 -40.82 -0.23 7.76 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -33.73 330.38 -6.54 -40.27 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.50 Total: 8.71 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -1.64 Total: -7.11 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.17 Total: -53.35 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.16 Total: -10.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.72 Total: 16.72 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.73 -6.54 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086448796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.434 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.62 seconds