Wall clock time and date at job start Tue Mar 31 2020 01:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.34182 * 127.02530 * 2 1 4 4 O 1.34213 * 109.12688 * 180.27155 * 3 2 1 5 5 C 1.33650 * 110.90885 * 359.70702 * 4 3 2 6 6 C 1.36420 * 108.39609 * 0.02562 * 5 4 3 7 7 C 1.47376 * 127.19163 * 179.97438 * 6 5 4 8 8 O 1.21613 * 119.99986 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00037 * 0.02761 * 7 6 5 10 10 C 1.46509 * 120.00153 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47135 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.84848 * 316.19429 * 11 10 9 13 13 C 1.53777 * 113.61574 * 87.50177 * 11 10 9 14 14 C 1.53774 * 87.08381 * 139.97935 * 13 11 10 15 15 H 1.08997 * 113.69521 * 220.00978 * 14 13 11 16 16 N 1.46505 * 113.61385 * 89.11575 * 14 13 11 17 17 C 1.36931 * 119.99788 * 107.50497 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31617 * 119.99873 * 180.27450 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.27770 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00079 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99901 * 21 19 17 25 25 C 1.53783 * 113.61362 * 185.00104 * 11 10 9 26 26 H 1.09007 * 109.47335 * 270.19805 * 1 2 3 27 27 H 1.09000 * 109.47665 * 30.19857 * 1 2 3 28 28 H 1.09000 * 109.47406 * 150.20160 * 1 2 3 29 29 H 1.08004 * 125.43489 * 359.97438 * 3 2 1 30 30 H 1.07998 * 125.80155 * 180.02562 * 5 4 3 31 31 H 0.97001 * 120.00080 * 359.97438 * 9 7 6 32 32 H 1.08997 * 109.46757 * 59.99292 * 10 9 7 33 33 H 1.09000 * 109.46687 * 299.99338 * 10 9 7 34 34 H 1.09001 * 113.61290 * 25.43194 * 13 11 10 35 35 H 1.09000 * 113.61684 * 254.53217 * 13 11 10 36 36 H 0.97000 * 119.99792 * 287.50291 * 16 14 13 37 37 H 0.97000 * 120.00553 * 180.02562 * 20 19 17 38 38 H 1.08995 * 113.61832 * 105.46763 * 25 11 10 39 39 H 1.09003 * 113.61236 * 334.56682 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0060 5 6 3.6623 -0.6759 -0.0037 6 6 2.3922 -1.1738 0.0035 7 6 1.9913 -2.5920 0.0078 8 8 0.8124 -2.8906 0.0138 9 7 2.9312 -3.5579 0.0051 10 6 2.5327 -4.9678 0.0088 11 6 3.7820 -5.8509 0.0040 12 1 4.5428 -5.5041 -0.6953 13 6 4.3272 -6.1545 1.4095 14 6 4.5960 -7.5841 0.9108 15 1 4.3637 -8.3552 1.6452 16 7 5.9191 -7.7553 0.3053 17 6 6.8920 -8.4513 0.9716 18 1 6.6840 -8.8745 1.9433 19 6 8.1438 -8.6185 0.3954 20 7 9.0773 -9.2921 1.0334 21 14 8.5036 -7.8873 -1.2855 22 1 9.0366 -6.5108 -1.1228 23 1 9.5077 -8.7274 -1.9862 24 1 7.2521 -7.8423 -2.0838 25 6 3.4743 -7.3529 -0.1155 26 1 -0.3634 0.0036 1.0277 27 1 -0.3634 0.8882 -0.5169 28 1 -0.3634 -0.8918 -0.5107 29 1 1.9894 2.1011 -0.0004 30 1 4.5702 -1.2607 -0.0070 31 1 3.8715 -3.3197 0.0000 32 1 1.9355 -5.1788 -0.8783 33 1 1.9433 -5.1763 0.9017 34 1 3.5707 -6.1003 2.1923 35 1 5.2329 -5.6004 1.6557 36 1 6.1058 -7.3756 -0.5676 37 1 9.9522 -9.4086 0.6311 38 1 3.6914 -7.7661 -1.1004 39 1 2.4846 -7.6262 0.2505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086448796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:26 Heat of formation + Delta-G solvation = -17.642290 kcal Electronic energy + Delta-G solvation = -20811.773782 eV Core-core repulsion = 17527.964502 eV Total energy + Delta-G solvation = -3283.809280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.51129 -40.78753 -39.80364 -36.11009 -35.01492 -34.78221 -32.75609 -31.67566 -28.75798 -28.13732 -26.45901 -25.58607 -24.36643 -23.04200 -21.39850 -21.22481 -20.12254 -19.55843 -18.95261 -17.20241 -17.10846 -16.98265 -16.54455 -16.33024 -15.97684 -15.75648 -15.15493 -14.94960 -14.64348 -14.40155 -14.27167 -14.05692 -13.95962 -13.43291 -13.35553 -13.10131 -13.00731 -12.66209 -12.45477 -12.24288 -11.89202 -11.65565 -11.53011 -11.14662 -10.92970 -10.82293 -10.61269 -10.06836 -9.61395 -9.29498 -8.02240 -5.36135 0.35242 1.07452 1.38160 1.42220 1.49747 2.00895 2.19723 2.31103 2.48789 3.28145 3.51426 3.60228 3.64974 3.73327 3.80389 4.00817 4.10710 4.27656 4.34889 4.37281 4.50310 4.70154 4.75864 4.79847 4.93454 4.94560 4.97912 5.04162 5.05996 5.09315 5.25313 5.32234 5.47033 5.51896 5.54454 5.81238 5.99539 6.23024 6.51872 7.08317 7.18236 7.84953 8.03931 9.19334 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024648 B = 0.003366 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.711787 B = 8316.810218 C = 9049.381959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.167 4.167 3 C -0.034 4.034 4 O -0.175 6.175 5 C 0.041 3.959 6 C -0.269 4.269 7 C 0.582 3.418 8 O -0.579 6.579 9 N -0.713 5.713 10 C 0.140 3.860 11 C -0.104 4.104 12 H 0.094 0.906 13 C -0.154 4.154 14 C 0.145 3.855 15 H 0.056 0.944 16 N -0.733 5.733 17 C -0.233 4.233 18 H 0.055 0.945 19 C -0.066 4.066 20 N -0.985 5.985 21 Si 0.957 3.043 22 H -0.274 1.274 23 H -0.299 1.299 24 H -0.250 1.250 25 C -0.134 4.134 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.244 0.756 30 H 0.243 0.757 31 H 0.411 0.589 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.367 0.633 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.178 22.064 -4.592 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.168 4.168 3 C -0.099 4.099 4 O -0.070 6.070 5 C -0.029 4.029 6 C -0.274 4.274 7 C 0.371 3.629 8 O -0.461 6.461 9 N -0.364 5.364 10 C 0.017 3.983 11 C -0.123 4.123 12 H 0.112 0.888 13 C -0.195 4.195 14 C 0.036 3.964 15 H 0.074 0.926 16 N -0.375 5.375 17 C -0.364 4.364 18 H 0.073 0.927 19 C -0.257 4.257 20 N -0.636 5.636 21 Si 0.784 3.216 22 H -0.200 1.200 23 H -0.226 1.226 24 H -0.175 1.175 25 C -0.173 4.173 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.260 0.740 30 H 0.259 0.741 31 H 0.247 0.753 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.201 0.799 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.673 21.883 -4.424 27.277 hybrid contribution 0.982 -0.243 -0.638 1.196 sum -14.691 21.640 -5.062 26.641 Atomic orbital electron populations 1.20175 0.88257 1.03012 1.02436 1.21714 0.97895 0.91006 1.06227 1.24362 0.78839 1.00724 1.05961 1.83829 1.30152 1.22435 1.70540 1.25027 0.99062 0.81141 0.97686 1.21504 0.94943 0.93640 1.17274 1.17581 0.85178 0.84718 0.75427 1.90731 1.18995 1.84066 1.52290 1.45815 1.09904 1.06139 1.74587 1.21325 0.96341 0.78666 1.01957 1.22583 0.96485 0.94871 0.98340 0.88822 1.23708 1.00548 0.98954 0.96259 1.21340 0.84187 0.95613 0.95304 0.92577 1.42427 1.09783 1.64987 1.20321 1.19063 0.91514 1.25192 1.00606 0.92660 1.25543 0.96032 1.01407 1.02746 1.69889 1.04967 1.47823 1.40884 0.85385 0.78130 0.77983 0.80126 1.20012 1.22576 1.17477 1.23368 0.99532 0.94456 0.99981 0.91393 0.89236 0.92680 0.74015 0.74070 0.75272 0.91610 0.91583 0.89229 0.92552 0.79898 0.93337 0.91463 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.00 71.23 0.71 -0.76 16 2 C -0.17 -3.19 6.37 -18.49 -0.12 -3.31 16 3 C -0.03 -0.45 11.96 66.89 0.80 0.35 16 4 O -0.18 -2.63 10.52 4.50 0.05 -2.59 16 5 C 0.04 0.61 11.61 67.40 0.78 1.39 16 6 C -0.27 -5.65 6.31 -18.99 -0.12 -5.77 16 7 C 0.58 14.82 7.81 86.65 0.68 15.49 16 8 O -0.58 -19.03 15.41 -4.07 -0.06 -19.10 16 9 N -0.71 -14.79 5.55 -466.41 -2.59 -17.37 16 10 C 0.14 3.13 5.51 86.38 0.48 3.60 16 11 C -0.10 -2.48 3.63 -10.27 -0.04 -2.51 16 12 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 13 C -0.15 -4.39 7.43 31.12 0.23 -4.16 16 14 C 0.14 5.09 4.56 45.52 0.21 5.30 16 15 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 16 N -0.73 -32.48 5.11 -320.44 -1.64 -34.11 16 17 C -0.23 -12.97 10.45 84.04 0.88 -12.09 16 18 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 19 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 20 N -0.99 -62.52 13.97 21.65 0.30 -62.22 16 21 Si 0.96 43.93 27.74 68.60 1.90 45.84 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.25 -10.24 6.51 99.48 0.65 -9.59 16 25 C -0.13 -3.54 7.39 31.12 0.23 -3.31 16 26 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.28 6.92 -2.39 -0.02 1.27 16 29 H 0.24 1.11 8.06 -2.91 -0.02 1.09 16 30 H 0.24 1.64 7.47 -2.91 -0.02 1.62 16 31 H 0.41 6.35 7.44 -92.71 -0.69 5.66 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.56 7.84 -2.39 -0.02 1.54 16 34 H 0.09 2.27 7.90 -2.39 -0.02 2.25 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.37 15.37 5.76 -92.71 -0.53 14.84 16 37 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.11 2.34 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -75.66 330.38 2.94 -72.72 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.21 Total: 25.96 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 5.19 Total: -9.12 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -3.92 Total: -113.70 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.02 Total: -21.68 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.90 Total: 45.84 kcal Total: -75.66 2.94 -72.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086448796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.075 kcal (2) G-P(sol) polarization free energy of solvation -75.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds