Wall clock time and date at job start Tue Mar 31 2020 01:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40364 * 126.64612 * 2 1 4 4 C 1.35134 * 107.12015 * 180.21815 * 3 2 1 5 5 O 1.33927 * 108.76302 * 359.78512 * 4 3 2 6 6 C 1.34913 * 109.38539 * 359.97438 * 5 4 3 7 7 C 1.46664 * 125.98647 * 179.97438 * 6 5 4 8 8 O 1.21694 * 119.99710 * 180.02562 * 7 6 5 9 9 N 1.34768 * 120.00174 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00158 * 180.27814 * 9 7 6 11 11 H 1.09001 * 110.64366 * 325.42489 * 10 9 7 12 12 C 1.55155 * 110.72359 * 88.56769 * 10 9 7 13 13 C 1.54910 * 101.58575 * 153.86353 * 12 10 9 14 14 N 1.47425 * 104.83106 * 322.99508 * 13 12 10 15 15 C 1.36941 * 125.64610 * 204.16142 * 14 13 12 16 16 H 1.08002 * 119.99832 * 169.83013 * 15 14 13 17 17 C 1.38808 * 120.00173 * 349.82956 * 15 14 13 18 18 N 1.31620 * 119.99941 * 350.47919 * 17 15 14 19 19 Si 1.86795 * 120.00146 * 170.47446 * 17 15 14 20 20 H 1.48500 * 109.47392 * 94.13880 * 19 17 15 21 21 H 1.48501 * 109.47303 * 214.14044 * 19 17 15 22 22 H 1.48505 * 109.47257 * 334.13805 * 19 17 15 23 23 C 1.47321 * 108.73656 * 24.28091 * 14 13 12 24 24 H 1.08999 * 109.84628 * 239.38394 * 23 14 13 25 25 C 1.53003 * 110.06303 * 118.13191 * 23 14 13 26 26 H 1.09000 * 109.47461 * 270.15470 * 1 2 3 27 27 H 1.08999 * 109.47006 * 30.15855 * 1 2 3 28 28 H 1.09006 * 109.46499 * 150.15534 * 1 2 3 29 29 H 1.08002 * 126.44345 * 359.97438 * 3 2 1 30 30 H 1.07998 * 125.61815 * 179.77424 * 4 3 2 31 31 H 0.97005 * 119.99934 * 0.02562 * 9 7 6 32 32 H 1.08998 * 111.00552 * 271.94056 * 12 10 9 33 33 H 1.09007 * 111.00169 * 35.75354 * 12 10 9 34 34 H 1.09001 * 110.36514 * 81.83100 * 13 12 10 35 35 H 1.08995 * 110.37103 * 204.15134 * 13 12 10 36 36 H 0.97006 * 119.99986 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.46630 * 302.26373 * 25 23 14 38 38 H 1.08998 * 109.47741 * 62.26307 * 25 23 14 39 39 H 1.09004 * 109.46974 * 182.26696 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6184 0.6745 -0.0049 5 8 3.6005 -0.6646 -0.0031 6 6 2.3221 -1.0954 0.0035 7 6 1.8844 -2.4952 0.0068 8 8 0.6969 -2.7614 0.0123 9 7 2.7972 -3.4867 0.0037 10 6 2.3600 -4.8849 0.0008 11 1 1.4442 -5.0024 0.5802 12 6 2.1602 -5.3947 -1.4509 13 6 2.3896 -6.9172 -1.2803 14 7 3.4665 -7.0268 -0.2795 15 6 4.3191 -8.0889 -0.1376 16 1 5.1773 -8.0093 0.5133 17 6 4.0805 -9.2679 -0.8304 18 7 2.9441 -9.4350 -1.4731 19 14 5.3722 -10.6171 -0.8507 20 1 5.0877 -11.5911 0.2335 21 1 5.3405 -11.3130 -2.1622 22 1 6.7153 -10.0198 -0.6397 23 6 3.4722 -5.8059 0.5451 24 1 4.4386 -5.3086 0.4631 25 6 3.1875 -6.1582 2.0065 26 1 -0.3634 0.0028 1.0276 27 1 -0.3633 0.8886 -0.5163 28 1 -0.3632 -0.8915 -0.5115 29 1 2.0306 2.1595 -0.0004 30 1 4.5046 1.2918 -0.0097 31 1 3.7437 -3.2745 -0.0004 32 1 1.1489 -5.1889 -1.8016 33 1 2.9005 -4.9604 -2.1229 34 1 1.4824 -7.3990 -0.9157 35 1 2.7028 -7.3619 -2.2249 36 1 2.7775 -10.2588 -1.9576 37 1 2.2288 -6.6722 2.0761 38 1 3.9766 -6.8085 2.3840 39 1 3.1541 -5.2449 2.6005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088469756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:13 Heat of formation + Delta-G solvation = 0.377330 kcal Electronic energy + Delta-G solvation = -21738.811809 eV Core-core repulsion = 18455.783919 eV Total energy + Delta-G solvation = -3283.027890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.81950 -39.52826 -37.54222 -34.54648 -33.77517 -32.07127 -30.60472 -30.34395 -28.77355 -27.57131 -24.90000 -23.98772 -22.77333 -21.40775 -20.29908 -20.17374 -19.47215 -17.99795 -16.77481 -16.47975 -16.14085 -15.83907 -14.70302 -14.38885 -14.28597 -14.06974 -13.68032 -13.31581 -13.17834 -13.13866 -12.78188 -12.64511 -12.11500 -12.05658 -11.89794 -11.56790 -11.11525 -10.94020 -10.77323 -10.60279 -10.44483 -10.07467 -9.93008 -9.85451 -9.83045 -9.63313 -8.90944 -8.62390 -8.53145 -6.84570 -5.75239 -3.08843 0.99139 2.19103 2.62319 3.23203 3.33731 3.39328 3.45434 3.47141 4.47903 4.55590 4.62856 4.83913 5.25056 5.31020 5.38159 5.42613 5.49801 5.57893 5.62967 5.63505 5.80353 5.88863 6.00981 6.12533 6.19987 6.27427 6.32338 6.34166 6.48530 6.58859 6.67171 6.74179 6.87732 7.10811 7.49170 7.57344 7.65898 7.77632 8.21654 8.25932 9.17459 9.79180 10.46019 11.37425 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036303 B = 0.003779 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.100403 B = 7406.862676 C = 7682.576593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.093 4.093 3 C -0.226 4.226 4 C -0.009 4.009 5 O -0.163 6.163 6 C -0.078 4.078 7 C 0.600 3.400 8 O -0.520 6.520 9 N -0.704 5.704 10 C 0.135 3.865 11 H 0.097 0.903 12 C -0.155 4.155 13 C 0.175 3.825 14 N -0.594 5.594 15 C -0.228 4.228 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.916 5.916 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.154 3.846 24 H 0.037 0.963 25 C -0.154 4.154 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.154 0.846 30 H 0.209 0.791 31 H 0.403 0.597 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.253 0.747 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 20.044 2.725 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.245 4.245 4 C -0.079 4.079 5 O -0.058 6.058 6 C -0.130 4.130 7 C 0.386 3.614 8 O -0.399 6.399 9 N -0.353 5.353 10 C 0.031 3.969 11 H 0.115 0.885 12 C -0.195 4.195 13 C 0.049 3.951 14 N -0.320 5.320 15 C -0.356 4.356 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.563 5.563 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.046 3.954 24 H 0.055 0.945 25 C -0.214 4.214 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.172 0.828 30 H 0.225 0.775 31 H 0.237 0.763 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.902 19.371 2.636 19.570 hybrid contribution 1.138 -0.352 0.031 1.192 sum 0.237 19.019 2.667 19.207 Atomic orbital electron populations 1.20418 0.88238 1.03583 1.02838 1.20638 0.97700 0.90978 1.00290 1.21731 0.92498 1.00079 1.10223 1.24328 0.99896 0.80735 1.02912 1.84076 1.28489 1.22615 1.70616 1.22062 0.81347 0.95093 1.14535 1.16514 0.85948 0.81674 0.77279 1.90840 1.15679 1.82222 1.51131 1.46010 1.09619 1.06432 1.73220 1.22222 0.98608 0.77853 0.98239 0.88542 1.23415 1.00823 1.00255 0.94965 1.21409 0.91091 0.88049 0.94513 1.44569 1.37552 1.15878 1.33961 1.18965 1.02268 0.89996 1.24355 0.90614 1.24823 0.97100 0.97315 1.01007 1.69958 1.22444 1.26258 1.37637 0.86141 0.80868 0.81877 0.77069 1.21629 1.21634 1.20621 1.21074 0.94539 0.88841 0.90904 0.94547 1.22224 1.02158 0.99740 0.97278 0.90889 0.91664 0.89332 0.82822 0.77482 0.76260 0.91664 0.91941 0.95222 0.90963 0.93662 0.92796 0.92590 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.81 36.00 0.35 -0.69 16 2 C -0.09 -1.14 6.20 -104.44 -0.65 -1.79 16 3 C -0.23 -2.13 10.83 -39.89 -0.43 -2.56 16 4 C -0.01 -0.08 12.08 29.63 0.36 0.28 16 5 O -0.16 -1.93 10.40 5.01 0.05 -1.88 16 6 C -0.08 -1.08 7.13 -36.79 -0.26 -1.34 16 7 C 0.60 9.60 7.79 -12.86 -0.10 9.50 16 8 O -0.52 -9.56 14.42 5.19 0.07 -9.48 16 9 N -0.70 -10.97 5.19 -53.34 -0.28 -11.25 16 10 C 0.13 2.47 2.79 -66.10 -0.18 2.29 16 11 H 0.10 1.87 7.33 -51.93 -0.38 1.49 16 12 C -0.15 -3.05 6.77 -24.58 -0.17 -3.21 16 13 C 0.17 4.22 5.42 -2.53 -0.01 4.20 16 14 N -0.59 -14.77 3.14 -162.35 -0.51 -15.28 16 15 C -0.23 -6.19 9.88 -15.06 -0.15 -6.34 16 16 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 17 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 18 N -0.92 -26.65 10.69 55.49 0.59 -26.05 16 19 Si 0.91 21.83 29.56 -169.99 -5.03 16.81 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.15 3.11 3.49 -66.79 -0.23 2.88 16 24 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 25 C -0.15 -2.93 9.15 37.16 0.34 -2.59 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.16 6.45 -51.93 -0.33 0.82 16 29 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.40 5.55 8.09 -40.82 -0.33 5.22 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 34 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.07 1.93 6.94 -51.93 -0.36 1.57 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 325.22 15.07 4.90 4.90 Total: -1.00 -31.37 325.22 -6.99 -38.37 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.57 Total: 3.49 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.23 Total: 0.38 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.19 Total: -52.58 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.13 Total: -11.36 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.37 -6.99 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088469756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.745 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds