Wall clock time and date at job start Tue Mar 31 2020 01:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40364 * 126.64612 * 2 1 4 4 C 1.35134 * 107.12015 * 180.21815 * 3 2 1 5 5 O 1.33927 * 108.76302 * 359.78512 * 4 3 2 6 6 C 1.34913 * 109.38539 * 359.97438 * 5 4 3 7 7 C 1.46664 * 125.98647 * 179.97438 * 6 5 4 8 8 O 1.21694 * 119.99710 * 180.02562 * 7 6 5 9 9 N 1.34768 * 120.00174 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00158 * 180.27814 * 9 7 6 11 11 H 1.09001 * 110.64366 * 325.42489 * 10 9 7 12 12 C 1.55155 * 110.72359 * 88.56769 * 10 9 7 13 13 C 1.54910 * 101.58575 * 153.86353 * 12 10 9 14 14 N 1.47425 * 104.83106 * 322.99508 * 13 12 10 15 15 C 1.36941 * 125.64610 * 204.16142 * 14 13 12 16 16 H 1.08002 * 119.99832 * 169.83013 * 15 14 13 17 17 C 1.38808 * 120.00173 * 349.82956 * 15 14 13 18 18 N 1.31620 * 119.99941 * 350.47919 * 17 15 14 19 19 Si 1.86795 * 120.00146 * 170.47446 * 17 15 14 20 20 H 1.48500 * 109.47392 * 94.13880 * 19 17 15 21 21 H 1.48501 * 109.47303 * 214.14044 * 19 17 15 22 22 H 1.48505 * 109.47257 * 334.13805 * 19 17 15 23 23 C 1.47321 * 108.73656 * 24.28091 * 14 13 12 24 24 H 1.08999 * 109.84628 * 239.38394 * 23 14 13 25 25 C 1.53003 * 110.06303 * 118.13191 * 23 14 13 26 26 H 1.09000 * 109.47461 * 270.15470 * 1 2 3 27 27 H 1.08999 * 109.47006 * 30.15855 * 1 2 3 28 28 H 1.09006 * 109.46499 * 150.15534 * 1 2 3 29 29 H 1.08002 * 126.44345 * 359.97438 * 3 2 1 30 30 H 1.07998 * 125.61815 * 179.77424 * 4 3 2 31 31 H 0.97005 * 119.99934 * 0.02562 * 9 7 6 32 32 H 1.08998 * 111.00552 * 271.94056 * 12 10 9 33 33 H 1.09007 * 111.00169 * 35.75354 * 12 10 9 34 34 H 1.09001 * 110.36514 * 81.83100 * 13 12 10 35 35 H 1.08995 * 110.37103 * 204.15134 * 13 12 10 36 36 H 0.97006 * 119.99986 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.46630 * 302.26373 * 25 23 14 38 38 H 1.08998 * 109.47741 * 62.26307 * 25 23 14 39 39 H 1.09004 * 109.46974 * 182.26696 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6184 0.6745 -0.0049 5 8 3.6005 -0.6646 -0.0031 6 6 2.3221 -1.0954 0.0035 7 6 1.8844 -2.4952 0.0068 8 8 0.6969 -2.7614 0.0123 9 7 2.7972 -3.4867 0.0037 10 6 2.3600 -4.8849 0.0008 11 1 1.4442 -5.0024 0.5802 12 6 2.1602 -5.3947 -1.4509 13 6 2.3896 -6.9172 -1.2803 14 7 3.4665 -7.0268 -0.2795 15 6 4.3191 -8.0889 -0.1376 16 1 5.1773 -8.0093 0.5133 17 6 4.0805 -9.2679 -0.8304 18 7 2.9441 -9.4350 -1.4731 19 14 5.3722 -10.6171 -0.8507 20 1 5.0877 -11.5911 0.2335 21 1 5.3405 -11.3130 -2.1622 22 1 6.7153 -10.0198 -0.6397 23 6 3.4722 -5.8059 0.5451 24 1 4.4386 -5.3086 0.4631 25 6 3.1875 -6.1582 2.0065 26 1 -0.3634 0.0028 1.0276 27 1 -0.3633 0.8886 -0.5163 28 1 -0.3632 -0.8915 -0.5115 29 1 2.0306 2.1595 -0.0004 30 1 4.5046 1.2918 -0.0097 31 1 3.7437 -3.2745 -0.0004 32 1 1.1489 -5.1889 -1.8016 33 1 2.9005 -4.9604 -2.1229 34 1 1.4824 -7.3990 -0.9157 35 1 2.7028 -7.3619 -2.2249 36 1 2.7775 -10.2588 -1.9576 37 1 2.2288 -6.6722 2.0761 38 1 3.9766 -6.8085 2.3840 39 1 3.1541 -5.2449 2.6005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088469756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:12 Heat of formation + Delta-G solvation = -20.140786 kcal Electronic energy + Delta-G solvation = -21739.701541 eV Core-core repulsion = 18455.783919 eV Total energy + Delta-G solvation = -3283.917623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -43.64878 -40.88775 -39.14792 -35.83266 -34.94659 -33.87075 -32.11004 -31.49767 -30.43721 -28.63237 -26.49964 -25.85281 -23.85380 -22.41805 -21.90526 -21.61423 -20.73667 -19.09323 -18.67850 -17.51922 -17.34880 -16.89368 -16.62056 -15.82089 -15.68994 -15.55952 -15.14864 -14.54699 -14.30464 -14.03604 -14.00458 -13.85709 -13.80957 -13.49268 -13.23245 -12.90791 -12.81618 -12.76575 -12.58365 -12.29732 -12.13400 -11.95131 -11.63126 -11.55437 -11.19661 -10.68277 -10.64249 -10.19493 -9.54329 -8.87979 -7.85620 -5.21080 0.05165 1.44197 1.48256 1.49206 1.58675 1.69942 2.09421 2.19637 2.52573 3.34546 3.52525 3.77849 3.80570 3.85137 3.89522 3.98305 4.17682 4.47895 4.56012 4.59062 4.60443 4.65749 4.77365 4.78602 4.81381 4.90576 5.01581 5.07784 5.13289 5.24904 5.32949 5.46241 5.47682 5.55155 5.58493 5.70005 5.90382 6.20452 6.46170 7.02809 7.08204 7.76009 8.42480 9.26422 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036303 B = 0.003779 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.100403 B = 7406.862676 C = 7682.576593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.094 4.094 3 C -0.235 4.235 4 C 0.014 3.986 5 O -0.172 6.172 6 C -0.118 4.118 7 C 0.600 3.400 8 O -0.553 6.553 9 N -0.697 5.697 10 C 0.153 3.847 11 H 0.086 0.914 12 C -0.140 4.140 13 C 0.183 3.817 14 N -0.613 5.613 15 C -0.234 4.234 16 H 0.083 0.917 17 C -0.064 4.064 18 N -0.950 5.950 19 Si 0.976 3.024 20 H -0.289 1.289 21 H -0.296 1.296 22 H -0.267 1.267 23 C 0.150 3.850 24 H 0.053 0.947 25 C -0.146 4.146 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.184 0.816 30 H 0.256 0.744 31 H 0.413 0.587 32 H 0.071 0.929 33 H 0.071 0.929 34 H -0.002 1.002 35 H 0.040 0.960 36 H 0.247 0.753 37 H 0.035 0.965 38 H 0.048 0.952 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 23.021 3.457 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.254 4.254 4 C -0.055 4.055 5 O -0.068 6.068 6 C -0.169 4.169 7 C 0.389 3.611 8 O -0.434 6.434 9 N -0.347 5.347 10 C 0.048 3.952 11 H 0.104 0.896 12 C -0.179 4.179 13 C 0.057 3.943 14 N -0.338 5.338 15 C -0.363 4.363 16 H 0.101 0.899 17 C -0.257 4.257 18 N -0.598 5.598 19 Si 0.804 3.196 20 H -0.216 1.216 21 H -0.222 1.222 22 H -0.191 1.191 23 C 0.044 3.956 24 H 0.071 0.929 25 C -0.205 4.205 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.202 0.798 30 H 0.272 0.728 31 H 0.250 0.750 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.016 0.984 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.837 22.390 3.394 22.662 hybrid contribution 0.618 -1.101 -0.170 1.274 sum 1.455 21.290 3.223 21.582 Atomic orbital electron populations 1.20432 0.88061 1.03561 1.03086 1.21024 0.98243 0.91768 0.98632 1.22097 0.92208 1.00682 1.10390 1.25363 1.01482 0.79591 0.99086 1.84063 1.27437 1.24350 1.70969 1.21578 0.82644 0.94024 1.18670 1.16790 0.85438 0.82672 0.76230 1.90820 1.16945 1.83069 1.52559 1.45782 1.10260 1.05066 1.73547 1.21789 0.97573 0.79264 0.96623 0.89640 1.23220 1.01426 0.96898 0.96368 1.21123 0.89685 0.90649 0.92852 1.44807 1.37172 1.16714 1.35147 1.19345 1.02670 0.90613 1.23671 0.89879 1.25643 0.99007 0.99752 1.01321 1.70160 1.24305 1.26522 1.38818 0.85106 0.79030 0.78967 0.76448 1.21566 1.22236 1.19128 1.21257 0.95843 0.87466 0.91052 0.92940 1.22108 1.00817 1.00868 0.96706 0.90480 0.89116 0.91857 0.79847 0.72815 0.74990 0.91076 0.91029 0.98366 0.94168 0.94364 0.94548 0.93300 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 9.81 71.23 0.70 -1.29 16 2 C -0.09 -2.10 6.20 -19.74 -0.12 -2.22 16 3 C -0.24 -3.50 10.83 22.07 0.24 -3.26 16 4 C 0.01 0.18 12.08 67.10 0.81 0.99 16 5 O -0.17 -3.61 10.40 -4.99 -0.05 -3.67 16 6 C -0.12 -3.07 7.13 24.08 0.17 -2.90 16 7 C 0.60 18.93 7.79 86.44 0.67 19.61 16 8 O -0.55 -20.58 14.42 -4.33 -0.06 -20.64 16 9 N -0.70 -21.05 5.19 -440.90 -2.29 -23.34 16 10 C 0.15 5.58 2.79 46.18 0.13 5.71 16 11 H 0.09 3.35 7.33 -2.39 -0.02 3.34 16 12 C -0.14 -5.57 6.77 31.99 0.22 -5.35 16 13 C 0.18 9.19 5.42 86.86 0.47 9.66 16 14 N -0.61 -30.95 3.14 -667.55 -2.10 -33.05 16 15 C -0.23 -12.84 9.88 84.03 0.83 -12.01 16 16 H 0.08 4.34 7.85 -2.91 -0.02 4.31 16 17 C -0.06 -3.61 5.40 84.86 0.46 -3.15 16 18 N -0.95 -57.25 10.69 21.65 0.23 -57.02 16 19 Si 0.98 45.45 29.56 68.60 2.03 47.48 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C 0.15 5.99 3.49 45.28 0.16 6.14 16 24 H 0.05 1.96 7.70 -2.39 -0.02 1.94 16 25 C -0.15 -5.40 9.15 71.98 0.66 -4.74 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.67 6.45 -2.38 -0.02 1.65 16 29 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.26 0.59 8.06 -2.91 -0.02 0.57 16 31 H 0.41 10.70 8.09 -92.70 -0.75 9.95 16 32 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 34 H 0.00 -0.09 8.07 -2.39 -0.02 -0.11 16 35 H 0.04 2.25 6.94 -2.39 -0.02 2.23 16 36 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.86 8.06 -2.39 -0.02 1.84 16 39 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -70.47 325.22 3.46 -67.01 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.31 Total: 16.06 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 5.39 Total: 7.18 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -4.15 Total: -113.41 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.11 Total: -24.31 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -70.47 3.46 -67.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088469756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.870 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds