Wall clock time and date at job start Tue Mar 31 2020 00:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34174 * 125.43685 * 2 1 4 4 C 1.47024 * 105.95263 * 179.97438 * 3 2 1 5 5 C 1.47381 * 127.19118 * 179.97438 * 4 3 2 6 6 O 1.21617 * 119.99727 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00243 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00249 * 179.97438 * 7 5 4 9 9 H 1.08999 * 110.64222 * 323.32370 * 8 7 5 10 10 C 1.55159 * 110.71730 * 86.45557 * 8 7 5 11 11 C 1.54910 * 101.58155 * 153.86612 * 10 8 7 12 12 N 1.47426 * 104.83073 * 322.99503 * 11 10 8 13 13 C 1.36945 * 125.64585 * 204.09314 * 12 11 10 14 14 H 1.08000 * 119.99441 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00031 * 0.02562 * 13 12 11 16 16 N 1.31619 * 120.00283 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46677 * 60.00366 * 17 15 13 19 19 H 1.48501 * 109.47050 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47416 * 300.00359 * 17 15 13 21 21 C 1.47019 * 108.70491 * 24.35098 * 12 11 10 22 22 H 1.08999 * 109.88651 * 239.29248 * 21 12 11 23 23 C 1.53002 * 109.87998 * 118.13286 * 21 12 11 24 24 C 1.36406 * 105.61522 * 0.25907 * 4 3 2 25 25 O 1.33650 * 108.39817 * 359.57744 * 24 4 3 26 26 H 1.08993 * 109.46963 * 90.00683 * 1 2 3 27 27 H 1.09007 * 109.47097 * 209.99941 * 1 2 3 28 28 H 1.08997 * 109.47078 * 330.00049 * 1 2 3 29 29 H 1.08003 * 127.02458 * 0.02562 * 3 2 1 30 30 H 0.97003 * 119.99546 * 0.02562 * 7 5 4 31 31 H 1.09007 * 111.00087 * 35.79301 * 10 8 7 32 32 H 1.08998 * 111.03932 * 271.95526 * 10 8 7 33 33 H 1.09002 * 110.36832 * 204.15743 * 11 10 8 34 34 H 1.08996 * 110.36615 * 81.83198 * 11 10 8 35 35 H 0.96998 * 120.00243 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47328 * 61.45477 * 23 21 12 37 37 H 1.08998 * 109.47470 * 181.45724 * 23 21 12 38 38 H 1.09002 * 109.47159 * 301.45434 * 23 21 12 39 39 H 1.08004 * 125.80278 * 179.73373 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8319 2.6266 0.0000 7 7 6.1068 0.8075 0.0015 8 6 7.3309 1.6123 0.0007 9 1 7.2027 2.5061 -0.6099 10 6 7.7398 1.9909 1.4487 11 6 9.2696 2.1839 1.2995 12 7 9.6888 1.1473 0.3387 13 6 10.9470 0.6166 0.2355 14 1 11.1541 -0.1417 -0.5050 15 6 11.9560 1.0533 1.0828 16 7 11.7035 1.9772 1.9857 17 14 13.6721 0.3289 0.9426 18 1 14.2089 0.5875 -0.4177 19 1 14.5593 0.9586 1.9533 20 1 13.6123 -1.1356 1.1810 21 6 8.5338 0.7821 -0.4946 22 1 8.3188 -0.2808 -0.3848 23 6 8.8262 1.1079 -1.9606 24 6 3.5790 -0.7581 -0.0050 25 8 2.2852 -1.0935 0.0006 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.9595 2.1230 0.0004 30 1 6.1630 -0.1609 0.0022 31 1 7.5140 1.1813 2.1428 32 1 7.2580 2.9171 1.7620 33 1 9.7661 2.0353 2.2584 34 1 9.4902 3.1765 0.9068 35 1 12.4085 2.2821 2.5780 36 1 9.6841 0.5263 -2.2980 37 1 7.9566 0.8587 -2.5687 38 1 9.0462 2.1709 -2.0597 39 1 4.4103 -1.4476 -0.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088540611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:32 Heat of formation + Delta-G solvation = 1.739906 kcal Electronic energy + Delta-G solvation = -21435.789177 eV Core-core repulsion = 18152.820372 eV Total energy + Delta-G solvation = -3282.968805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.70877 -39.46090 -37.46221 -34.05844 -33.25241 -32.47842 -31.64151 -30.36216 -28.65572 -26.89606 -25.12250 -24.01220 -23.13903 -21.22226 -20.33466 -20.03441 -19.29575 -17.73742 -16.78910 -16.48204 -16.18855 -15.74208 -14.81064 -14.53836 -14.39479 -13.95419 -13.63004 -13.42642 -13.32396 -13.21923 -12.94385 -12.77452 -12.14493 -12.07212 -11.94626 -11.57294 -11.14854 -10.86136 -10.83849 -10.53280 -10.42211 -10.12850 -9.88852 -9.80971 -9.73516 -9.56132 -8.80435 -8.67709 -8.58519 -6.88604 -5.66098 -3.09329 1.25285 1.90485 2.63263 3.31512 3.39452 3.44005 3.45308 3.48166 4.34601 4.47463 4.57765 4.79660 5.05461 5.12911 5.21519 5.36136 5.41258 5.43736 5.53942 5.59096 5.63351 5.79098 5.83840 6.11398 6.18380 6.25025 6.31178 6.34914 6.54216 6.60559 6.73186 6.82424 6.86331 7.10955 7.51891 7.61140 7.72990 7.84835 8.33913 8.42155 9.19636 9.80562 10.44489 11.37121 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039750 B = 0.003441 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.240178 B = 8134.723880 C = 8298.708411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.162 4.162 4 C -0.224 4.224 5 C 0.583 3.417 6 O -0.538 6.538 7 N -0.712 5.712 8 C 0.136 3.864 9 H 0.092 0.908 10 C -0.153 4.153 11 C 0.153 3.847 12 N -0.595 5.595 13 C -0.222 4.222 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.921 5.921 17 Si 0.915 3.085 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.156 3.844 22 H 0.035 0.965 23 C -0.156 4.156 24 C 0.016 3.984 25 O -0.175 6.175 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.158 0.842 30 H 0.394 0.606 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.015 0.985 35 H 0.253 0.747 36 H 0.054 0.946 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.425 -5.855 -3.836 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 C -0.182 4.182 4 C -0.229 4.229 5 C 0.370 3.630 6 O -0.416 6.416 7 N -0.362 5.362 8 C 0.032 3.968 9 H 0.110 0.890 10 C -0.192 4.192 11 C 0.028 3.972 12 N -0.320 5.320 13 C -0.350 4.350 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.745 3.255 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.048 3.952 22 H 0.053 0.947 23 C -0.215 4.215 24 C -0.054 4.054 25 O -0.071 6.071 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.176 0.824 30 H 0.229 0.771 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -19.353 -5.224 -3.719 20.388 hybrid contribution 1.173 -0.629 -0.153 1.340 sum -18.180 -5.853 -3.873 19.487 Atomic orbital electron populations 1.20314 0.84733 1.04184 1.03632 1.22302 0.94118 0.83693 1.06749 1.22503 0.90077 0.99692 1.05929 1.21613 0.94869 0.93303 1.13118 1.17240 0.82158 0.87147 0.76425 1.90778 1.87106 1.13631 1.50080 1.45924 1.05531 1.09992 1.74716 1.22165 0.82074 0.94135 0.98428 0.88976 1.23401 1.00338 1.00620 0.94887 1.21958 0.87362 0.90462 0.97437 1.44493 1.05643 1.44998 1.36884 1.18974 0.84508 1.16716 1.14800 0.90505 1.24790 0.98267 0.98936 0.98545 1.69785 1.31710 1.32340 1.23067 0.86157 0.83851 0.78312 0.77177 1.21221 1.21582 1.21188 1.20977 0.87608 0.95748 0.90891 0.94710 1.22246 1.00057 1.01854 0.97361 1.24432 0.84194 0.95509 1.01308 1.83710 1.16504 1.35511 1.71338 0.90020 0.90456 0.89198 0.82417 0.77147 0.92002 0.91893 0.87297 0.96744 0.93614 0.92647 0.94326 0.92892 0.77135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.40 36.01 0.37 -0.04 16 2 C -0.02 -0.20 7.28 -35.74 -0.26 -0.46 16 3 C -0.16 -1.95 10.90 -37.45 -0.41 -2.36 16 4 C -0.22 -2.95 6.31 -103.28 -0.65 -3.60 16 5 C 0.58 9.44 7.81 -12.54 -0.10 9.34 16 6 O -0.54 -10.77 16.71 5.26 0.09 -10.69 16 7 N -0.71 -10.73 5.20 -53.11 -0.28 -11.01 16 8 C 0.14 2.52 2.76 -66.09 -0.18 2.34 16 9 H 0.09 1.83 7.40 -51.93 -0.38 1.45 16 10 C -0.15 -3.09 6.77 -24.58 -0.17 -3.26 16 11 C 0.15 3.74 5.89 -2.53 -0.01 3.73 16 12 N -0.60 -14.78 3.13 -162.57 -0.51 -15.28 16 13 C -0.22 -6.00 9.87 -15.06 -0.15 -6.14 16 14 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 17 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 C 0.16 3.11 3.48 -66.95 -0.23 2.88 16 22 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 23 C -0.16 -2.88 9.14 37.16 0.34 -2.54 16 24 C 0.02 0.16 11.61 30.07 0.35 0.51 16 25 O -0.17 -1.83 10.52 7.66 0.08 -1.75 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.16 1.79 8.06 -52.48 -0.42 1.36 16 30 H 0.39 4.74 7.29 -40.82 -0.30 4.44 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.11 2.98 5.87 -51.93 -0.31 2.67 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.05 1.05 8.02 -51.93 -0.42 0.64 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.21 1.35 7.47 -52.48 -0.39 0.96 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -32.94 327.32 -6.89 -39.83 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.55 Total: 3.24 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.20 Total: 0.02 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.22 Total: -52.35 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.17 Total: -12.44 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.94 -6.89 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088540611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.569 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds