Wall clock time and date at job start Tue Mar 31 2020 00:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34174 * 125.43685 * 2 1 4 4 C 1.47024 * 105.95263 * 179.97438 * 3 2 1 5 5 C 1.47381 * 127.19118 * 179.97438 * 4 3 2 6 6 O 1.21617 * 119.99727 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00243 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00249 * 179.97438 * 7 5 4 9 9 H 1.08999 * 110.64222 * 323.32370 * 8 7 5 10 10 C 1.55159 * 110.71730 * 86.45557 * 8 7 5 11 11 C 1.54910 * 101.58155 * 153.86612 * 10 8 7 12 12 N 1.47426 * 104.83073 * 322.99503 * 11 10 8 13 13 C 1.36945 * 125.64585 * 204.09314 * 12 11 10 14 14 H 1.08000 * 119.99441 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00031 * 0.02562 * 13 12 11 16 16 N 1.31619 * 120.00283 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99811 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46677 * 60.00366 * 17 15 13 19 19 H 1.48501 * 109.47050 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47416 * 300.00359 * 17 15 13 21 21 C 1.47019 * 108.70491 * 24.35098 * 12 11 10 22 22 H 1.08999 * 109.88651 * 239.29248 * 21 12 11 23 23 C 1.53002 * 109.87998 * 118.13286 * 21 12 11 24 24 C 1.36406 * 105.61522 * 0.25907 * 4 3 2 25 25 O 1.33650 * 108.39817 * 359.57744 * 24 4 3 26 26 H 1.08993 * 109.46963 * 90.00683 * 1 2 3 27 27 H 1.09007 * 109.47097 * 209.99941 * 1 2 3 28 28 H 1.08997 * 109.47078 * 330.00049 * 1 2 3 29 29 H 1.08003 * 127.02458 * 0.02562 * 3 2 1 30 30 H 0.97003 * 119.99546 * 0.02562 * 7 5 4 31 31 H 1.09007 * 111.00087 * 35.79301 * 10 8 7 32 32 H 1.08998 * 111.03932 * 271.95526 * 10 8 7 33 33 H 1.09002 * 110.36832 * 204.15743 * 11 10 8 34 34 H 1.08996 * 110.36615 * 81.83198 * 11 10 8 35 35 H 0.96998 * 120.00243 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47328 * 61.45477 * 23 21 12 37 37 H 1.08998 * 109.47470 * 181.45724 * 23 21 12 38 38 H 1.09002 * 109.47159 * 301.45434 * 23 21 12 39 39 H 1.08004 * 125.80278 * 179.73373 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8319 2.6266 0.0000 7 7 6.1068 0.8075 0.0015 8 6 7.3309 1.6123 0.0007 9 1 7.2027 2.5061 -0.6099 10 6 7.7398 1.9909 1.4487 11 6 9.2696 2.1839 1.2995 12 7 9.6888 1.1473 0.3387 13 6 10.9470 0.6166 0.2355 14 1 11.1541 -0.1417 -0.5050 15 6 11.9560 1.0533 1.0828 16 7 11.7035 1.9772 1.9857 17 14 13.6721 0.3289 0.9426 18 1 14.2089 0.5875 -0.4177 19 1 14.5593 0.9586 1.9533 20 1 13.6123 -1.1356 1.1810 21 6 8.5338 0.7821 -0.4946 22 1 8.3188 -0.2808 -0.3848 23 6 8.8262 1.1079 -1.9606 24 6 3.5790 -0.7581 -0.0050 25 8 2.2852 -1.0935 0.0006 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.9595 2.1230 0.0004 30 1 6.1630 -0.1609 0.0022 31 1 7.5140 1.1813 2.1428 32 1 7.2580 2.9171 1.7620 33 1 9.7661 2.0353 2.2584 34 1 9.4902 3.1765 0.9068 35 1 12.4085 2.2821 2.5780 36 1 9.6841 0.5263 -2.2980 37 1 7.9566 0.8587 -2.5687 38 1 9.0462 2.1709 -2.0597 39 1 4.4103 -1.4476 -0.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088540611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:30 Heat of formation + Delta-G solvation = -20.124079 kcal Electronic energy + Delta-G solvation = -21436.737271 eV Core-core repulsion = 18152.820372 eV Total energy + Delta-G solvation = -3283.916898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.53832 -40.86584 -39.09308 -35.64985 -34.20467 -33.85350 -32.78536 -32.04712 -30.43547 -27.68722 -26.61203 -25.86756 -24.37997 -22.19448 -22.00743 -21.52384 -20.61028 -18.70357 -18.62794 -17.55487 -17.29098 -17.01073 -16.61006 -15.87856 -15.71739 -15.61136 -15.16157 -14.48340 -14.28777 -14.00965 -13.97770 -13.82351 -13.73378 -13.70840 -13.24179 -12.94613 -12.72926 -12.67618 -12.58783 -12.24685 -12.11980 -12.01783 -11.57341 -11.47062 -11.13565 -10.83828 -10.71727 -10.08244 -9.52882 -8.90001 -7.73996 -5.19415 0.34920 1.04194 1.49182 1.52097 1.58244 1.88241 2.07554 2.31650 2.53236 3.36512 3.51282 3.66789 3.68294 3.83840 3.94644 4.05546 4.19132 4.41601 4.49005 4.54331 4.61594 4.67900 4.75691 4.77264 4.81317 4.91243 4.94151 5.04161 5.10426 5.13373 5.34746 5.41280 5.50370 5.59318 5.59891 5.79971 6.01694 6.30640 6.53716 7.11331 7.19461 7.79243 8.42992 9.27949 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039750 B = 0.003441 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.240178 B = 8134.723880 C = 8298.708411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.009 4.009 3 C -0.194 4.194 4 C -0.261 4.261 5 C 0.586 3.414 6 O -0.585 6.585 7 N -0.698 5.698 8 C 0.153 3.847 9 H 0.077 0.923 10 C -0.139 4.139 11 C 0.158 3.842 12 N -0.613 5.613 13 C -0.228 4.228 14 H 0.087 0.913 15 C -0.070 4.070 16 N -0.952 5.952 17 Si 0.979 3.021 18 H -0.280 1.280 19 H -0.298 1.298 20 H -0.274 1.274 21 C 0.153 3.847 22 H 0.057 0.943 23 C -0.148 4.148 24 C 0.045 3.955 25 O -0.175 6.175 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.153 0.847 30 H 0.413 0.587 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.078 0.922 34 H -0.016 1.016 35 H 0.246 0.754 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.049 -8.546 -4.835 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 C -0.213 4.213 4 C -0.266 4.266 5 C 0.375 3.625 6 O -0.467 6.467 7 N -0.349 5.349 8 C 0.047 3.953 9 H 0.095 0.905 10 C -0.179 4.179 11 C 0.033 3.967 12 N -0.339 5.339 13 C -0.356 4.356 14 H 0.105 0.895 15 C -0.262 4.262 16 N -0.602 5.602 17 Si 0.808 3.192 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.200 1.200 21 C 0.046 3.954 22 H 0.075 0.925 23 C -0.207 4.207 24 C -0.025 4.025 25 O -0.070 6.070 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.171 0.829 30 H 0.251 0.749 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.002 0.998 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -21.017 -7.974 -4.749 22.975 hybrid contribution 1.583 0.181 0.130 1.599 sum -19.434 -7.793 -4.619 21.441 Atomic orbital electron populations 1.20528 0.81868 1.05496 1.05014 1.22909 0.95580 0.82738 1.04490 1.22626 0.90265 1.00375 1.08058 1.21430 0.93867 0.94532 1.16775 1.17644 0.82984 0.86797 0.75031 1.90753 1.87750 1.15841 1.52332 1.45643 1.04153 1.10650 1.74437 1.21733 0.83060 0.93962 0.96513 0.90487 1.23200 0.97116 1.01013 0.96539 1.21660 0.89991 0.89219 0.95848 1.44728 1.06423 1.44805 1.37919 1.19375 0.85503 1.16410 1.14339 0.89485 1.25628 1.02000 0.99790 0.98747 1.70039 1.32247 1.33909 1.24015 0.85133 0.79319 0.77883 0.76871 1.20609 1.22473 1.19992 1.21182 0.86335 0.96910 0.90991 0.92491 1.22137 1.01301 1.00567 0.96676 1.25062 0.84924 0.94791 0.97747 1.83768 1.16683 1.35672 1.70905 0.88480 0.89021 0.88009 0.82935 0.74941 0.91084 0.91958 0.90378 0.99817 0.94452 0.93136 0.91000 0.94719 0.73374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.40 71.24 0.74 0.11 16 2 C -0.01 -0.15 7.28 24.76 0.18 0.03 16 3 C -0.19 -4.45 10.90 23.65 0.26 -4.19 16 4 C -0.26 -6.44 6.31 -18.99 -0.12 -6.56 16 5 C 0.59 18.41 7.81 86.65 0.68 19.09 16 6 O -0.59 -23.74 16.71 -4.08 -0.07 -23.81 16 7 N -0.70 -19.67 5.20 -440.21 -2.29 -21.96 16 8 C 0.15 5.53 2.76 46.18 0.13 5.66 16 9 H 0.08 3.07 7.40 -2.39 -0.02 3.06 16 10 C -0.14 -5.66 6.77 31.99 0.22 -5.45 16 11 C 0.16 8.02 5.89 86.86 0.51 8.54 16 12 N -0.61 -30.55 3.13 -668.25 -2.09 -32.64 16 13 C -0.23 -12.26 9.87 84.03 0.83 -11.43 16 14 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 15 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 16 N -0.95 -56.78 10.09 21.65 0.22 -56.56 16 17 Si 0.98 45.02 29.55 68.60 2.03 47.05 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C 0.15 5.86 3.48 45.34 0.16 6.02 16 22 H 0.06 1.98 7.69 -2.39 -0.02 1.97 16 23 C -0.15 -5.22 9.14 71.98 0.66 -4.56 16 24 C 0.04 0.76 11.61 67.39 0.78 1.54 16 25 O -0.17 -3.08 10.52 4.51 0.05 -3.03 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 30 H 0.41 8.50 7.29 -92.71 -0.68 7.82 16 31 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.08 4.47 5.87 -2.39 -0.01 4.45 16 34 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 35 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.05 1.82 8.02 -2.39 -0.02 1.80 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.25 1.94 7.47 -2.91 -0.02 1.92 16 Total: -1.00 -73.70 327.32 3.71 -69.99 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.38 Total: 15.58 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 5.49 Total: 5.38 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -4.16 Total: -111.15 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.02 Total: -26.84 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.70 3.71 -69.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088540611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.863 kcal (2) G-P(sol) polarization free energy of solvation -73.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds