Wall clock time and date at job start Tue Mar 31 2020 01:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35135 * 126.43945 * 2 1 4 4 O 1.33932 * 108.76375 * 179.76899 * 3 2 1 5 5 C 1.34913 * 109.38678 * 0.37662 * 4 3 2 6 6 C 1.46653 * 125.98783 * 179.88399 * 5 4 3 7 7 O 1.21697 * 119.99815 * 179.69018 * 6 5 4 8 8 N 1.34777 * 120.00472 * 359.69589 * 6 5 4 9 9 C 1.46493 * 120.00328 * 180.02562 * 8 6 5 10 10 H 1.09007 * 110.77996 * 328.23338 * 9 8 6 11 11 C 1.55155 * 110.72564 * 91.47427 * 9 8 6 12 12 C 1.54906 * 101.58328 * 153.86435 * 11 9 8 13 13 N 1.47418 * 104.83216 * 322.99015 * 12 11 9 14 14 C 1.36944 * 125.64693 * 204.16051 * 13 12 11 15 15 H 1.08002 * 119.99783 * 179.97438 * 14 13 12 16 16 C 1.38808 * 120.00111 * 359.96626 * 14 13 12 17 17 N 1.31620 * 119.99980 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00090 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47202 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47109 * 119.99845 * 18 16 14 21 21 H 1.48497 * 109.47449 * 239.99751 * 18 16 14 22 22 C 1.47019 * 108.70564 * 24.13346 * 13 12 11 23 23 H 1.09008 * 109.87958 * 239.36823 * 22 13 12 24 24 C 1.52997 * 109.88752 * 118.35477 * 22 13 12 25 25 C 1.36547 * 108.02349 * 359.62541 * 5 4 3 26 26 H 1.09000 * 109.46947 * 270.00544 * 1 2 3 27 27 H 1.09001 * 109.47110 * 30.00158 * 1 2 3 28 28 H 1.08999 * 109.47031 * 150.00125 * 1 2 3 29 29 H 1.07999 * 125.62160 * 359.97438 * 3 2 1 30 30 H 0.97001 * 119.99257 * 359.97438 * 8 6 5 31 31 H 1.09003 * 110.99799 * 35.78807 * 11 9 8 32 32 H 1.09001 * 111.00303 * 271.94261 * 11 9 8 33 33 H 1.09001 * 110.36496 * 204.15090 * 12 11 9 34 34 H 1.09002 * 110.36576 * 81.83622 * 12 11 9 35 35 H 0.97002 * 120.00225 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.47153 * 61.45267 * 24 22 13 37 37 H 1.09001 * 109.46832 * 301.45458 * 24 22 13 38 38 H 1.09004 * 109.47261 * 181.45439 * 24 22 13 39 39 H 1.07996 * 126.64472 * 180.19240 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 0.0051 5 6 3.6261 -0.6680 0.0001 6 6 4.8379 -1.4939 0.0009 7 8 4.7471 -2.7075 0.0016 8 7 6.0521 -0.9091 0.0008 9 6 7.2626 -1.7341 0.0010 10 1 7.0942 -2.6678 0.5377 11 6 7.7374 -2.0128 -1.4496 12 6 9.2549 -2.2442 -1.2412 13 7 9.6410 -1.2888 -0.1870 14 6 10.9000 -0.7894 0.0152 15 1 11.0811 -0.0908 0.8187 16 6 11.9433 -1.1810 -0.8124 17 7 11.7226 -2.0328 -1.7912 18 14 13.6604 -0.4991 -0.5370 19 1 13.6436 0.4323 0.6195 20 1 14.5979 -1.6166 -0.2583 21 1 14.1050 0.2284 -1.7528 22 6 8.4506 -0.9605 0.6109 23 1 8.2593 0.1117 0.5673 24 6 8.6622 -1.3925 2.0633 25 6 2.3408 -1.1291 0.0001 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.9770 2.1146 -0.0004 30 1 6.1244 0.0582 -0.0001 31 1 7.5583 -1.1503 -2.0917 32 1 7.2579 -2.9046 -1.8531 33 1 9.8004 -2.0348 -2.1613 34 1 9.4411 -3.2669 -0.9132 35 1 12.4517 -2.3068 -2.3693 36 1 9.5105 -0.8519 2.4832 37 1 8.8606 -2.4637 2.0985 38 1 7.7663 -1.1696 2.6429 39 1 2.0267 -2.1624 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088805487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:16 Heat of formation + Delta-G solvation = -18.970312 kcal Electronic energy + Delta-G solvation = -21484.901268 eV Core-core repulsion = 18201.034401 eV Total energy + Delta-G solvation = -3283.866867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.69012 -40.93121 -39.17579 -35.80323 -35.09637 -33.88671 -32.12230 -31.64844 -30.40790 -28.21052 -26.68120 -25.87487 -24.18267 -22.18819 -22.04837 -21.58673 -20.78192 -18.89612 -18.72493 -17.63167 -17.38672 -17.14816 -16.65763 -15.82925 -15.68888 -15.57749 -15.07830 -14.47138 -14.33432 -14.08022 -14.02808 -13.92682 -13.73529 -13.49711 -13.26039 -12.95539 -12.76257 -12.64718 -12.53698 -12.29693 -12.18450 -11.95174 -11.59855 -11.50071 -11.38493 -10.74631 -10.72494 -10.20367 -9.53737 -8.90947 -7.75187 -5.20423 0.01393 1.35020 1.48683 1.49466 1.59367 1.64103 2.06594 2.14732 2.52125 3.35518 3.51335 3.71856 3.80757 3.83836 3.91023 4.06619 4.16250 4.36047 4.47652 4.59275 4.62073 4.67289 4.78300 4.88762 4.90828 4.94485 5.00889 5.05093 5.07859 5.11136 5.30234 5.48829 5.51270 5.54833 5.59139 5.79196 5.85486 6.29941 6.41101 6.96812 7.10894 7.77962 8.41488 9.27057 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040012 B = 0.003480 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.622669 B = 8044.413640 C = 8202.471113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.007 3.993 4 O -0.168 6.168 5 C -0.101 4.101 6 C 0.602 3.398 7 O -0.561 6.561 8 N -0.694 5.694 9 C 0.150 3.850 10 H 0.088 0.912 11 C -0.140 4.140 12 C 0.158 3.842 13 N -0.614 5.614 14 C -0.226 4.226 15 H 0.086 0.914 16 C -0.069 4.069 17 N -0.951 5.951 18 Si 0.979 3.021 19 H -0.265 1.265 20 H -0.296 1.296 21 H -0.293 1.293 22 C 0.151 3.849 23 H 0.051 0.949 24 C -0.147 4.147 25 C -0.122 4.122 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.253 0.747 30 H 0.414 0.586 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.079 0.921 34 H -0.012 1.012 35 H 0.246 0.754 36 H 0.049 0.951 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.838 8.128 4.233 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C -0.063 4.063 4 O -0.064 6.064 5 C -0.153 4.153 6 C 0.390 3.610 7 O -0.442 6.442 8 N -0.343 5.343 9 C 0.045 3.955 10 H 0.106 0.894 11 C -0.180 4.180 12 C 0.033 3.967 13 N -0.339 5.339 14 C -0.355 4.355 15 H 0.103 0.897 16 C -0.261 4.261 17 N -0.601 5.601 18 Si 0.808 3.192 19 H -0.189 1.189 20 H -0.224 1.224 21 H -0.220 1.220 22 C 0.044 3.956 23 H 0.068 0.932 24 C -0.206 4.206 25 C -0.143 4.143 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.269 0.731 30 H 0.251 0.749 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.006 0.994 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.394 7.454 4.175 23.037 hybrid contribution 1.235 0.085 -0.082 1.240 sum -20.159 7.539 4.093 21.908 Atomic orbital electron populations 1.20258 0.86403 1.03903 1.03192 1.20859 0.99243 0.91567 1.09162 1.25151 0.78660 1.01762 1.00689 1.84065 1.30914 1.20700 1.70697 1.21681 0.95471 0.81339 1.16777 1.16802 0.81860 0.86257 0.76121 1.90850 1.86582 1.13897 1.52828 1.45774 1.04422 1.11001 1.73139 1.21855 0.82894 0.94098 0.96701 0.89441 1.23234 0.97158 1.01442 0.96122 1.21672 0.90435 0.90296 0.94334 1.44734 1.04513 1.51070 1.33598 1.19431 0.84439 1.20082 1.11533 0.89666 1.25617 1.01842 1.00305 0.98358 1.70045 1.30954 1.37797 1.21300 0.84989 0.79583 0.77249 0.77383 1.18906 1.22352 1.21971 1.21183 0.86117 0.96964 0.91338 0.93180 1.22127 1.01196 1.00615 0.96671 1.22094 0.90705 1.01483 1.00037 0.90404 0.89371 0.91337 0.73094 0.74854 0.91192 0.91214 0.90323 0.99386 0.94414 0.93203 0.94272 0.91286 0.82523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.39 71.24 0.74 -0.02 16 2 C -0.21 -3.34 6.14 -20.06 -0.12 -3.46 16 3 C 0.01 0.09 12.00 67.10 0.81 0.90 16 4 O -0.17 -3.57 10.40 -5.04 -0.05 -3.62 16 5 C -0.10 -2.63 7.13 24.07 0.17 -2.46 16 6 C 0.60 19.17 7.79 86.44 0.67 19.84 16 7 O -0.56 -21.57 16.51 -4.34 -0.07 -21.65 16 8 N -0.69 -21.13 5.17 -440.89 -2.28 -23.41 16 9 C 0.15 5.50 2.84 46.18 0.13 5.63 16 10 H 0.09 3.44 7.26 -2.38 -0.02 3.42 16 11 C -0.14 -5.65 6.77 31.98 0.22 -5.44 16 12 C 0.16 7.98 5.89 86.86 0.51 8.49 16 13 N -0.61 -30.95 3.13 -668.27 -2.09 -33.04 16 14 C -0.23 -12.33 9.87 84.03 0.83 -11.50 16 15 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 16 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 17 N -0.95 -56.70 10.09 21.65 0.22 -56.48 16 18 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 C 0.15 6.00 3.48 45.34 0.16 6.16 16 23 H 0.05 1.89 7.72 -2.38 -0.02 1.87 16 24 C -0.15 -5.35 9.14 71.98 0.66 -4.69 16 25 C -0.12 -2.79 10.57 22.39 0.24 -2.55 16 26 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.25 0.96 8.06 -2.91 -0.02 0.94 16 30 H 0.41 10.79 8.13 -92.71 -0.75 10.04 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.08 4.48 5.87 -2.39 -0.01 4.47 16 34 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -69.65 328.06 3.53 -66.12 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.30 Total: 17.17 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 5.47 Total: 7.49 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -4.15 Total: -112.92 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.12 Total: -25.27 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.65 3.53 -66.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088805487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.148 kcal (2) G-P(sol) polarization free energy of solvation -69.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds