Wall clock time and date at job start Tue Mar 31 2020 00:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35135 * 125.61762 * 2 1 4 4 C 1.40365 * 107.11128 * 180.02562 * 3 2 1 5 5 C 1.36542 * 106.71321 * 0.02562 * 4 3 2 6 6 C 1.46655 * 125.99035 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99810 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00110 * 179.72349 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27595 * 8 6 5 10 10 C 1.52996 * 109.46681 * 179.97438 * 9 8 6 11 11 C 1.53785 * 113.61371 * 274.12933 * 10 9 8 12 12 C 1.53950 * 87.02155 * 220.05210 * 11 10 9 13 13 N 1.46493 * 113.54005 * 270.81096 * 12 11 10 14 14 C 1.36932 * 120.00301 * 252.49964 * 13 12 11 15 15 H 1.07995 * 120.00265 * 359.97438 * 14 13 12 16 16 C 1.38818 * 120.00048 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99967 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99765 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47408 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47072 * 119.99905 * 18 16 14 21 21 H 1.48499 * 109.46873 * 239.99030 * 18 16 14 22 22 C 1.53781 * 87.11182 * 25.36434 * 12 11 10 23 23 O 1.33936 * 125.61413 * 180.31339 * 2 1 3 24 24 H 1.08997 * 109.47295 * 89.99425 * 1 2 3 25 25 H 1.08994 * 109.47298 * 209.99842 * 1 2 3 26 26 H 1.09007 * 109.46974 * 329.99809 * 1 2 3 27 27 H 1.07992 * 126.44300 * 0.02562 * 3 2 1 28 28 H 1.08005 * 126.64230 * 179.97438 * 4 3 2 29 29 H 0.96990 * 119.99728 * 0.26873 * 8 6 5 30 30 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 31 31 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 32 32 H 1.08995 * 112.85231 * 45.33310 * 10 9 8 33 33 H 1.09004 * 113.61452 * 334.57728 * 11 10 9 34 34 H 1.09001 * 113.60935 * 105.47115 * 11 10 9 35 35 H 1.08999 * 113.74307 * 139.94508 * 12 11 10 36 36 H 0.97006 * 119.99937 * 72.48946 * 13 12 11 37 37 H 0.97005 * 119.99732 * 180.02562 * 17 16 14 38 38 H 1.08997 * 113.61573 * 220.08660 * 22 12 11 39 39 H 1.09004 * 113.61337 * 89.18465 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 3.5823 -0.7117 -0.0015 6 6 4.7414 -1.6103 -0.0029 7 8 5.8680 -1.1501 -0.0038 8 7 4.5589 -2.9456 0.0019 9 6 5.7168 -3.8431 0.0066 10 6 5.2361 -5.2956 0.0122 11 6 4.9449 -5.8427 1.4196 12 6 5.5906 -7.1603 0.9536 13 7 4.6411 -8.0925 0.3408 14 6 4.2571 -9.2207 1.0152 15 1 4.6546 -9.4236 1.9986 16 6 3.3578 -10.1043 0.4343 17 7 2.8737 -9.8573 -0.7645 18 14 2.8346 -11.6437 1.3540 19 1 3.5173 -11.6891 2.6719 20 1 1.3639 -11.6224 1.5584 21 1 3.2068 -12.8437 0.5624 22 6 6.3779 -6.3226 -0.0679 23 8 2.2869 -1.0888 -0.0060 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9614 2.1260 0.0004 28 1 4.5114 1.2702 -0.0011 29 1 3.6610 -3.3123 0.0024 30 1 6.3197 -3.6630 -0.8834 31 1 6.3178 -3.6562 0.8965 32 1 4.4334 -5.4785 -0.7021 33 1 5.5029 -5.3380 2.2083 34 1 3.8816 -5.9313 1.6422 35 1 6.2194 -7.6320 1.7086 36 1 4.2842 -7.9104 -0.5427 37 1 2.2449 -10.4746 -1.1703 38 1 6.4697 -6.7981 -1.0444 39 1 7.3284 -5.9494 0.3134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090914723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:35 Heat of formation + Delta-G solvation = 2.737309 kcal Electronic energy + Delta-G solvation = -20673.888564 eV Core-core repulsion = 17390.963010 eV Total energy + Delta-G solvation = -3282.925554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.90781 -39.65661 -38.44604 -34.82082 -33.55293 -33.15518 -32.24720 -30.24803 -28.35342 -26.56827 -25.07283 -23.79919 -22.55895 -21.81647 -21.57319 -20.34738 -18.79384 -18.06187 -17.25892 -16.70340 -16.06907 -15.70324 -15.23729 -14.86726 -14.46847 -14.14475 -13.75770 -13.54752 -13.42627 -13.29089 -13.20283 -13.13712 -12.89424 -12.29612 -12.22972 -11.93682 -11.43145 -11.06125 -10.87829 -10.56016 -10.43882 -10.25865 -10.14587 -9.90327 -9.71160 -9.51560 -9.15408 -8.90916 -8.66919 -7.01837 -5.82526 -3.11563 0.86628 2.09350 2.40635 3.08265 3.14644 3.40322 3.46382 3.48480 4.33187 4.54269 4.66317 4.67099 4.98624 5.03353 5.06057 5.07942 5.21212 5.29852 5.41019 5.43678 5.58044 5.60478 5.67159 5.72731 5.84194 5.92531 6.07736 6.13202 6.19681 6.29860 6.35913 6.56360 6.65710 6.73385 6.87561 7.02771 7.41422 7.68028 8.00312 8.36614 9.47408 10.04911 10.39072 11.39967 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.003250 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.753796 B = 8612.299777 C = 9676.513192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.019 3.981 3 C -0.226 4.226 4 C -0.120 4.120 5 C -0.078 4.078 6 C 0.600 3.400 7 O -0.527 6.527 8 N -0.711 5.711 9 C 0.130 3.870 10 C -0.121 4.121 11 C -0.169 4.169 12 C 0.168 3.832 13 N -0.706 5.706 14 C -0.242 4.242 15 H 0.073 0.927 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.147 4.147 23 O -0.161 6.161 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.160 0.840 29 H 0.408 0.592 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.069 0.931 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 20.906 1.061 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 C -0.245 4.245 4 C -0.141 4.141 5 C -0.130 4.130 6 C 0.386 3.614 7 O -0.406 6.406 8 N -0.361 5.361 9 C 0.007 3.993 10 C -0.139 4.139 11 C -0.210 4.210 12 C 0.055 3.945 13 N -0.345 5.345 14 C -0.373 4.373 15 H 0.091 0.909 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.187 4.187 23 O -0.057 6.057 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.243 0.757 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.278 20.692 1.171 20.765 hybrid contribution -0.912 -0.654 0.098 1.127 sum -2.190 20.038 1.269 20.197 Atomic orbital electron populations 1.20433 0.84517 1.04605 1.04066 1.22858 0.94362 0.84086 1.02005 1.21583 0.92349 0.99774 1.10816 1.21936 0.98603 0.92948 1.00565 1.22117 0.81928 0.94701 1.14299 1.16570 0.85963 0.81734 0.77181 1.90871 1.22065 1.76275 1.51405 1.45998 1.11488 1.05208 1.73418 1.21584 0.87223 0.88400 1.02099 1.22727 1.00084 0.91162 0.99975 1.23930 1.01997 1.00690 0.94417 1.21086 0.90968 0.88586 0.93830 1.42186 1.50037 1.22688 1.19560 1.19339 1.20472 0.97926 0.99549 0.90925 1.24769 1.00054 0.99267 0.96822 1.69673 1.35078 1.38051 1.15233 0.86098 0.78073 0.83097 0.78809 1.20478 1.21838 1.21824 1.23442 0.96666 0.97021 1.01536 1.84033 1.15990 1.34960 1.70672 0.89494 0.89938 0.88957 0.82692 0.82269 0.75731 0.91393 0.91156 0.88805 0.91349 0.91466 0.91889 0.78108 0.93487 0.91241 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.41 36.01 0.37 -0.07 16 2 C 0.02 0.19 7.31 -35.41 -0.26 -0.07 16 3 C -0.23 -2.09 10.77 -39.89 -0.43 -2.52 16 4 C -0.12 -1.36 10.62 -39.39 -0.42 -1.78 16 5 C -0.08 -1.02 7.13 -36.80 -0.26 -1.28 16 6 C 0.60 8.73 7.79 -12.86 -0.10 8.63 16 7 O -0.53 -9.02 16.87 5.19 0.09 -8.93 16 8 N -0.71 -9.53 5.55 -61.63 -0.34 -9.87 16 9 C 0.13 1.77 5.50 -4.04 -0.02 1.74 16 10 C -0.12 -1.81 3.62 -89.81 -0.33 -2.14 16 11 C -0.17 -2.82 7.44 -25.83 -0.19 -3.01 16 12 C 0.17 3.25 4.57 -67.03 -0.31 2.94 16 13 N -0.71 -17.33 5.31 -52.56 -0.28 -17.61 16 14 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 18 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C -0.15 -2.33 7.39 -25.92 -0.19 -2.53 16 23 O -0.16 -1.94 10.40 4.98 0.05 -1.89 16 24 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 27 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.41 5.07 8.23 -40.82 -0.34 4.73 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.38 9.98 7.90 -40.82 -0.32 9.66 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -31.97 337.44 -7.74 -39.71 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.67 Total: 10.76 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.38 Total: -7.33 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.10 Total: -54.49 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.14 Total: -10.82 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.97 -7.74 -39.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090914723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.450 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds