Wall clock time and date at job start Tue Mar 31 2020 00:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35135 * 125.61762 * 2 1 4 4 C 1.40365 * 107.11128 * 180.02562 * 3 2 1 5 5 C 1.36542 * 106.71321 * 0.02562 * 4 3 2 6 6 C 1.46655 * 125.99035 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99810 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00110 * 179.72349 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27595 * 8 6 5 10 10 C 1.52996 * 109.46681 * 179.97438 * 9 8 6 11 11 C 1.53785 * 113.61371 * 274.12933 * 10 9 8 12 12 C 1.53950 * 87.02155 * 220.05210 * 11 10 9 13 13 N 1.46493 * 113.54005 * 270.81096 * 12 11 10 14 14 C 1.36932 * 120.00301 * 252.49964 * 13 12 11 15 15 H 1.07995 * 120.00265 * 359.97438 * 14 13 12 16 16 C 1.38818 * 120.00048 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99967 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99765 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47408 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47072 * 119.99905 * 18 16 14 21 21 H 1.48499 * 109.46873 * 239.99030 * 18 16 14 22 22 C 1.53781 * 87.11182 * 25.36434 * 12 11 10 23 23 O 1.33936 * 125.61413 * 180.31339 * 2 1 3 24 24 H 1.08997 * 109.47295 * 89.99425 * 1 2 3 25 25 H 1.08994 * 109.47298 * 209.99842 * 1 2 3 26 26 H 1.09007 * 109.46974 * 329.99809 * 1 2 3 27 27 H 1.07992 * 126.44300 * 0.02562 * 3 2 1 28 28 H 1.08005 * 126.64230 * 179.97438 * 4 3 2 29 29 H 0.96990 * 119.99728 * 0.26873 * 8 6 5 30 30 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 31 31 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 32 32 H 1.08995 * 112.85231 * 45.33310 * 10 9 8 33 33 H 1.09004 * 113.61452 * 334.57728 * 11 10 9 34 34 H 1.09001 * 113.60935 * 105.47115 * 11 10 9 35 35 H 1.08999 * 113.74307 * 139.94508 * 12 11 10 36 36 H 0.97006 * 119.99937 * 72.48946 * 13 12 11 37 37 H 0.97005 * 119.99732 * 180.02562 * 17 16 14 38 38 H 1.08997 * 113.61573 * 220.08660 * 22 12 11 39 39 H 1.09004 * 113.61337 * 89.18465 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 3.5823 -0.7117 -0.0015 6 6 4.7414 -1.6103 -0.0029 7 8 5.8680 -1.1501 -0.0038 8 7 4.5589 -2.9456 0.0019 9 6 5.7168 -3.8431 0.0066 10 6 5.2361 -5.2956 0.0122 11 6 4.9449 -5.8427 1.4196 12 6 5.5906 -7.1603 0.9536 13 7 4.6411 -8.0925 0.3408 14 6 4.2571 -9.2207 1.0152 15 1 4.6546 -9.4236 1.9986 16 6 3.3578 -10.1043 0.4343 17 7 2.8737 -9.8573 -0.7645 18 14 2.8346 -11.6437 1.3540 19 1 3.5173 -11.6891 2.6719 20 1 1.3639 -11.6224 1.5584 21 1 3.2068 -12.8437 0.5624 22 6 6.3779 -6.3226 -0.0679 23 8 2.2869 -1.0888 -0.0060 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9614 2.1260 0.0004 28 1 4.5114 1.2702 -0.0011 29 1 3.6610 -3.3123 0.0024 30 1 6.3197 -3.6630 -0.8834 31 1 6.3178 -3.6562 0.8965 32 1 4.4334 -5.4785 -0.7021 33 1 5.5029 -5.3380 2.2083 34 1 3.8816 -5.9313 1.6422 35 1 6.2194 -7.6320 1.7086 36 1 4.2842 -7.9104 -0.5427 37 1 2.2449 -10.4746 -1.1703 38 1 6.4697 -6.7981 -1.0444 39 1 7.3284 -5.9494 0.3134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090914723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:32 Heat of formation + Delta-G solvation = -18.545483 kcal Electronic energy + Delta-G solvation = -20674.811455 eV Core-core repulsion = 17390.963010 eV Total energy + Delta-G solvation = -3283.848445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.73226 -40.84337 -39.81103 -36.14786 -35.06812 -34.23371 -32.98817 -32.08129 -29.48711 -27.58478 -26.45125 -25.68530 -23.69931 -22.79172 -22.63342 -21.28861 -20.06305 -19.43209 -19.07664 -17.58027 -17.24698 -16.74987 -16.52103 -16.30611 -15.74638 -15.72070 -15.12179 -14.75868 -14.60909 -14.17068 -14.05021 -13.98508 -13.81205 -13.68782 -13.30479 -12.96574 -12.93299 -12.79941 -12.67779 -12.14061 -12.06208 -11.75897 -11.50491 -11.33529 -11.07269 -10.95837 -10.81921 -10.27771 -9.48755 -9.00822 -7.96035 -5.24426 -0.04196 1.32128 1.47935 1.48215 1.56813 1.58462 2.05042 2.14533 2.55377 3.36673 3.55498 3.70284 3.75994 3.81256 3.90602 3.96145 4.12614 4.30583 4.37991 4.51409 4.57799 4.68844 4.70832 4.71215 4.72765 4.91916 4.92465 4.97477 5.08370 5.12133 5.17898 5.32734 5.42231 5.44874 5.52271 5.64743 5.83304 6.27773 6.35982 6.91954 7.32700 8.09686 8.31915 9.27484 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.003250 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.753796 B = 8612.299777 C = 9676.513192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.021 3.979 3 C -0.229 4.229 4 C -0.118 4.118 5 C -0.114 4.114 6 C 0.600 3.400 7 O -0.560 6.560 8 N -0.708 5.708 9 C 0.138 3.862 10 C -0.105 4.105 11 C -0.155 4.155 12 C 0.144 3.856 13 N -0.721 5.721 14 C -0.242 4.242 15 H 0.077 0.923 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.266 1.266 20 H -0.294 1.294 21 H -0.294 1.294 22 C -0.132 4.132 23 O -0.176 6.176 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.187 0.813 28 H 0.165 0.835 29 H 0.412 0.588 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.059 0.941 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 22.398 1.934 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 C -0.247 4.247 4 C -0.138 4.138 5 C -0.165 4.165 6 C 0.387 3.613 7 O -0.442 6.442 8 N -0.358 5.358 9 C 0.015 3.985 10 C -0.124 4.124 11 C -0.196 4.196 12 C 0.034 3.966 13 N -0.359 5.359 14 C -0.373 4.373 15 H 0.095 0.905 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.190 1.190 20 H -0.221 1.221 21 H -0.221 1.221 22 C -0.171 4.171 23 O -0.072 6.072 24 H 0.119 0.881 25 H 0.101 0.899 26 H 0.137 0.863 27 H 0.204 0.796 28 H 0.183 0.817 29 H 0.247 0.753 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.617 22.205 2.080 22.361 hybrid contribution -0.821 -1.013 -0.145 1.312 sum -2.438 21.192 1.934 21.419 Atomic orbital electron populations 1.20672 0.81696 1.05914 1.05330 1.23740 0.95917 0.83562 0.99907 1.21954 0.91141 1.01261 1.10351 1.22244 1.00010 0.92516 0.99069 1.21890 0.82095 0.94994 1.17556 1.16742 0.86142 0.81929 0.76449 1.90837 1.23365 1.76809 1.53180 1.45958 1.11629 1.05079 1.73090 1.21459 0.87265 0.87197 1.02547 1.22509 0.99304 0.92078 0.98461 1.23766 1.00744 0.99030 0.96036 1.21417 0.91072 0.88951 0.95125 1.42329 1.51160 1.23162 1.19243 1.19712 1.19538 0.98496 0.99599 0.90517 1.25558 1.00919 1.02461 0.97840 1.69820 1.36168 1.39148 1.16848 0.85081 0.77333 0.79320 0.78080 1.19021 1.22082 1.22130 1.23342 0.97817 0.95942 1.00002 1.84018 1.15817 1.36235 1.71166 0.88086 0.89909 0.86345 0.79595 0.81702 0.75274 0.91066 0.90578 0.90234 0.88891 0.93526 0.91986 0.79383 0.94022 0.92224 0.87288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.41 71.24 0.74 0.06 16 2 C 0.02 0.36 7.31 24.97 0.18 0.54 16 3 C -0.23 -3.71 10.77 22.07 0.24 -3.47 16 4 C -0.12 -2.56 10.62 22.39 0.24 -2.32 16 5 C -0.11 -2.93 7.13 24.07 0.17 -2.76 16 6 C 0.60 17.43 7.79 86.44 0.67 18.11 16 7 O -0.56 -19.17 16.87 -4.36 -0.07 -19.24 16 8 N -0.71 -18.71 5.55 -467.10 -2.59 -21.30 16 9 C 0.14 3.59 5.50 86.38 0.47 4.07 16 10 C -0.10 -3.05 3.62 -10.27 -0.04 -3.09 16 11 C -0.16 -5.01 7.44 31.18 0.23 -4.78 16 12 C 0.14 5.51 4.57 45.58 0.21 5.71 16 13 N -0.72 -35.79 5.31 -320.19 -1.70 -37.49 16 14 C -0.24 -13.29 9.97 84.04 0.84 -12.46 16 15 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 17 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 18 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 C -0.13 -4.01 7.39 31.12 0.23 -3.78 16 23 O -0.18 -4.12 10.40 -5.11 -0.05 -4.18 16 24 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 28 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.41 10.21 8.23 -92.72 -0.76 9.45 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.94 7.87 -2.39 -0.02 1.92 16 32 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.09 2.57 7.92 -2.38 -0.02 2.55 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 2.36 8.10 -2.39 -0.02 2.34 16 36 H 0.37 19.90 7.90 -92.70 -0.73 19.17 16 37 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.11 2.67 8.10 -2.38 -0.02 2.65 16 Total: -1.00 -69.59 337.44 2.12 -67.47 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.43 Total: 33.46 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 4.66 Total: -8.01 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -4.01 Total: -117.32 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.13 Total: -23.42 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -69.59 2.12 -67.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090914723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.925 kcal (2) G-P(sol) polarization free energy of solvation -69.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds