Wall clock time and date at job start Tue Mar 31 2020 00:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33655 * 125.80044 * 2 1 4 4 C 1.34214 * 110.90867 * 180.02562 * 3 2 1 5 5 C 1.34177 * 109.12112 * 0.26473 * 4 3 2 6 6 C 1.36415 * 125.80186 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19129 * 359.97438 * 6 2 1 8 8 O 1.21610 * 120.00405 * 359.97438 * 7 6 2 9 9 N 1.34782 * 119.99689 * 180.02562 * 7 6 2 10 10 C 1.46504 * 119.99607 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46548 * 179.97438 * 10 9 7 12 12 C 1.53782 * 113.61424 * 274.13120 * 11 10 9 13 13 C 1.53963 * 87.01943 * 220.05367 * 12 11 10 14 14 N 1.46499 * 113.53100 * 270.81139 * 13 12 11 15 15 C 1.36942 * 119.99525 * 252.49355 * 14 13 12 16 16 H 1.07995 * 120.00151 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99525 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00150 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99785 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47013 * 90.00150 * 19 17 15 21 21 H 1.48502 * 109.47180 * 209.99716 * 19 17 15 22 22 H 1.48495 * 109.47098 * 329.99808 * 19 17 15 23 23 C 1.53785 * 87.10997 * 25.36277 * 13 12 11 24 24 H 1.08998 * 109.47054 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47245 * 120.02362 * 1 2 3 26 26 H 1.09001 * 109.46538 * 240.02636 * 1 2 3 27 27 H 1.08002 * 125.43487 * 179.97438 * 4 3 2 28 28 H 1.08005 * 127.01670 * 179.73742 * 5 4 3 29 29 H 0.96998 * 119.99812 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.46630 * 299.99271 * 10 9 7 31 31 H 1.08993 * 109.47354 * 59.99187 * 10 9 7 32 32 H 1.08996 * 112.85544 * 45.33383 * 11 10 9 33 33 H 1.09000 * 113.61578 * 334.57076 * 12 11 10 34 34 H 1.08999 * 113.61342 * 105.47364 * 12 11 10 35 35 H 1.08997 * 113.74119 * 139.94313 * 13 12 11 36 36 H 0.96998 * 120.00368 * 72.50107 * 14 13 12 37 37 H 0.97009 * 119.99914 * 179.97438 * 18 17 15 38 38 H 1.08994 * 113.60947 * 220.09002 * 23 13 12 39 39 H 1.09004 * 113.61230 * 89.18972 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7391 -0.0006 5 6 3.6849 -0.5990 -0.0068 6 6 2.3051 -1.1064 -0.0005 7 6 1.8740 -2.5157 -0.0006 8 8 0.6891 -2.7892 0.0002 9 7 2.7932 -3.5015 -0.0006 10 6 2.3646 -4.9024 -0.0013 11 6 3.5950 -5.8119 -0.0018 12 6 4.1506 -6.0958 -1.4073 13 6 4.3820 -7.5431 -0.9359 14 7 5.6944 -7.7550 -0.3203 15 6 6.6597 -8.4577 -0.9908 16 1 6.4537 -8.8554 -1.9735 17 6 7.9030 -8.6589 -0.4072 18 7 8.1543 -8.1739 0.7902 19 14 9.2197 -9.6182 -1.3215 20 1 10.0323 -8.6846 -2.1421 21 1 10.0974 -10.3096 -0.3434 22 1 8.5761 -10.6227 -2.2056 23 6 3.2541 -7.3092 0.0829 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3634 -0.5142 -0.8898 26 1 -0.3632 -0.5134 0.8903 27 1 4.4172 1.4286 -0.0011 28 1 4.5929 -1.1839 -0.0128 29 1 3.7383 -3.2833 -0.0009 30 1 1.7668 -5.0999 0.8885 31 1 1.7673 -5.0993 -0.8914 32 1 4.3551 -5.4962 0.7127 33 1 3.4050 -6.0080 -2.1975 34 1 5.0708 -5.5558 -1.6303 35 1 4.1415 -8.2936 -1.6889 36 1 5.8795 -7.3976 0.5623 37 1 9.0230 -8.3148 1.1982 38 1 3.4517 -7.7473 1.0612 39 1 2.2629 -7.5537 -0.2992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090916560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:48 Heat of formation + Delta-G solvation = 1.295292 kcal Electronic energy + Delta-G solvation = -20762.551650 eV Core-core repulsion = 17479.563566 eV Total energy + Delta-G solvation = -3282.988085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -42.76786 -39.55661 -38.39421 -34.66067 -33.36882 -33.04209 -32.05467 -30.18684 -27.93526 -26.64304 -25.06354 -23.93399 -23.13419 -21.83271 -21.00951 -19.92521 -18.49060 -17.92697 -17.26439 -16.55630 -15.94629 -15.90709 -15.20690 -14.85812 -14.63723 -14.10858 -13.92813 -13.38884 -13.35220 -13.29318 -13.07398 -13.02911 -12.88351 -12.25610 -12.00634 -11.91924 -11.40016 -11.05405 -10.85527 -10.49456 -10.22237 -10.15419 -10.02403 -9.82217 -9.70659 -9.47492 -9.02399 -8.90133 -8.72085 -7.01893 -5.82634 -3.11655 1.20196 1.85212 2.58269 3.28545 3.32504 3.40427 3.45926 3.47494 4.29321 4.54135 4.66041 4.66380 5.00647 5.06681 5.09430 5.22831 5.32104 5.32632 5.43776 5.45003 5.57676 5.63170 5.71012 5.86919 5.90615 5.96305 6.07134 6.11244 6.21125 6.36749 6.45092 6.59009 6.73726 6.79435 6.89664 7.03521 7.57019 7.67360 8.24406 8.36617 9.47294 10.04909 10.39139 11.39810 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.003087 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.495461 B = 9067.953997 C = 9820.912085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.073 3.927 3 O -0.178 6.178 4 C -0.041 4.041 5 C -0.186 4.186 6 C -0.245 4.245 7 C 0.586 3.414 8 O -0.549 6.549 9 N -0.716 5.716 10 C 0.132 3.868 11 C -0.120 4.120 12 C -0.168 4.168 13 C 0.167 3.833 14 N -0.706 5.706 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.208 0.792 28 H 0.159 0.841 29 H 0.402 0.598 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.068 0.932 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 16.959 -1.089 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.020 3.980 3 O -0.074 6.074 4 C -0.107 4.107 5 C -0.206 4.206 6 C -0.249 4.249 7 C 0.374 3.626 8 O -0.429 6.429 9 N -0.366 5.366 10 C 0.009 3.991 11 C -0.139 4.139 12 C -0.210 4.210 13 C 0.055 3.945 14 N -0.345 5.345 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.187 4.187 24 H 0.093 0.907 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.225 0.775 28 H 0.176 0.824 29 H 0.237 0.763 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.257 16.886 -1.190 21.501 hybrid contribution 1.724 -0.329 -0.123 1.759 sum -11.533 16.557 -1.313 20.221 Atomic orbital electron populations 1.20457 0.83728 1.03386 1.05264 1.22811 0.94132 0.83161 0.97860 1.83767 1.17222 1.34944 1.71441 1.23860 0.83452 0.96444 1.06893 1.22948 0.96811 0.94626 1.06176 1.21224 0.93355 0.94026 1.16339 1.17201 0.85516 0.83744 0.76137 1.90757 1.16626 1.84261 1.51226 1.45855 1.09799 1.06385 1.74607 1.21485 0.97072 0.78749 1.01764 1.22710 0.96299 0.95027 0.99819 1.23917 1.00215 1.02325 0.94500 1.21096 0.86130 0.93460 0.93817 1.42178 1.08427 1.64171 1.19687 1.19295 0.92044 1.26348 0.99635 0.90986 1.24764 0.97951 1.01359 0.96818 1.69661 1.22920 1.50292 1.15215 0.86169 0.81813 0.79528 0.78557 1.21685 1.21747 1.20682 1.23440 0.99723 0.94082 1.01479 0.90666 0.88624 0.88621 0.77519 0.82370 0.76339 0.91764 0.91518 0.88935 0.91403 0.91539 0.91939 0.78114 0.93437 0.91303 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 9.14 36.01 0.33 -0.31 16 2 C 0.07 0.82 7.37 -34.96 -0.26 0.56 16 3 O -0.18 -1.82 10.52 7.65 0.08 -1.74 16 4 C -0.04 -0.35 12.03 29.30 0.35 0.00 16 5 C -0.19 -1.86 10.60 -37.46 -0.40 -2.25 16 6 C -0.25 -3.02 6.31 -103.28 -0.65 -3.67 16 7 C 0.59 8.34 7.81 -12.54 -0.10 8.24 16 8 O -0.55 -9.08 15.66 5.27 0.08 -9.00 16 9 N -0.72 -9.38 5.55 -61.40 -0.34 -9.73 16 10 C 0.13 1.81 5.50 -4.04 -0.02 1.79 16 11 C -0.12 -1.80 3.62 -89.80 -0.33 -2.12 16 12 C -0.17 -2.80 7.44 -25.82 -0.19 -2.99 16 13 C 0.17 3.24 4.57 -67.02 -0.31 2.94 16 14 N -0.71 -17.29 5.31 -52.54 -0.28 -17.57 16 15 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 19 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.15 -2.36 7.39 -25.91 -0.19 -2.55 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 26 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 27 H 0.21 0.94 8.06 -52.49 -0.42 0.51 16 28 H 0.16 1.30 7.74 -52.48 -0.41 0.89 16 29 H 0.40 4.69 7.64 -40.82 -0.31 4.38 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.38 9.95 7.90 -40.82 -0.32 9.63 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -32.17 334.58 -7.34 -39.52 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.62 Total: 10.96 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.01 Total: -7.58 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.10 Total: -54.25 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.16 Total: -10.74 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.17 -7.34 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090916560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.814 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds