Wall clock time and date at job start Tue Mar 31 2020 00:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33655 * 125.80044 * 2 1 4 4 C 1.34214 * 110.90867 * 180.02562 * 3 2 1 5 5 C 1.34177 * 109.12112 * 0.26473 * 4 3 2 6 6 C 1.36415 * 125.80186 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19129 * 359.97438 * 6 2 1 8 8 O 1.21610 * 120.00405 * 359.97438 * 7 6 2 9 9 N 1.34782 * 119.99689 * 180.02562 * 7 6 2 10 10 C 1.46504 * 119.99607 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46548 * 179.97438 * 10 9 7 12 12 C 1.53782 * 113.61424 * 274.13120 * 11 10 9 13 13 C 1.53963 * 87.01943 * 220.05367 * 12 11 10 14 14 N 1.46499 * 113.53100 * 270.81139 * 13 12 11 15 15 C 1.36942 * 119.99525 * 252.49355 * 14 13 12 16 16 H 1.07995 * 120.00151 * 0.02562 * 15 14 13 17 17 C 1.38813 * 119.99525 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00150 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99785 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47013 * 90.00150 * 19 17 15 21 21 H 1.48502 * 109.47180 * 209.99716 * 19 17 15 22 22 H 1.48495 * 109.47098 * 329.99808 * 19 17 15 23 23 C 1.53785 * 87.10997 * 25.36277 * 13 12 11 24 24 H 1.08998 * 109.47054 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47245 * 120.02362 * 1 2 3 26 26 H 1.09001 * 109.46538 * 240.02636 * 1 2 3 27 27 H 1.08002 * 125.43487 * 179.97438 * 4 3 2 28 28 H 1.08005 * 127.01670 * 179.73742 * 5 4 3 29 29 H 0.96998 * 119.99812 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.46630 * 299.99271 * 10 9 7 31 31 H 1.08993 * 109.47354 * 59.99187 * 10 9 7 32 32 H 1.08996 * 112.85544 * 45.33383 * 11 10 9 33 33 H 1.09000 * 113.61578 * 334.57076 * 12 11 10 34 34 H 1.08999 * 113.61342 * 105.47364 * 12 11 10 35 35 H 1.08997 * 113.74119 * 139.94313 * 13 12 11 36 36 H 0.96998 * 120.00368 * 72.50107 * 14 13 12 37 37 H 0.97009 * 119.99914 * 179.97438 * 18 17 15 38 38 H 1.08994 * 113.60947 * 220.09002 * 23 13 12 39 39 H 1.09004 * 113.61230 * 89.18972 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7391 -0.0006 5 6 3.6849 -0.5990 -0.0068 6 6 2.3051 -1.1064 -0.0005 7 6 1.8740 -2.5157 -0.0006 8 8 0.6891 -2.7892 0.0002 9 7 2.7932 -3.5015 -0.0006 10 6 2.3646 -4.9024 -0.0013 11 6 3.5950 -5.8119 -0.0018 12 6 4.1506 -6.0958 -1.4073 13 6 4.3820 -7.5431 -0.9359 14 7 5.6944 -7.7550 -0.3203 15 6 6.6597 -8.4577 -0.9908 16 1 6.4537 -8.8554 -1.9735 17 6 7.9030 -8.6589 -0.4072 18 7 8.1543 -8.1739 0.7902 19 14 9.2197 -9.6182 -1.3215 20 1 10.0323 -8.6846 -2.1421 21 1 10.0974 -10.3096 -0.3434 22 1 8.5761 -10.6227 -2.2056 23 6 3.2541 -7.3092 0.0829 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3634 -0.5142 -0.8898 26 1 -0.3632 -0.5134 0.8903 27 1 4.4172 1.4286 -0.0011 28 1 4.5929 -1.1839 -0.0128 29 1 3.7383 -3.2833 -0.0009 30 1 1.7668 -5.0999 0.8885 31 1 1.7673 -5.0993 -0.8914 32 1 4.3551 -5.4962 0.7127 33 1 3.4050 -6.0080 -2.1975 34 1 5.0708 -5.5558 -1.6303 35 1 4.1415 -8.2936 -1.6889 36 1 5.8795 -7.3976 0.5623 37 1 9.0230 -8.3148 1.1982 38 1 3.4517 -7.7473 1.0612 39 1 2.2629 -7.5537 -0.2992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090916560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:42 Heat of formation + Delta-G solvation = -20.076777 kcal Electronic energy + Delta-G solvation = -20763.478413 eV Core-core repulsion = 17479.563566 eV Total energy + Delta-G solvation = -3283.914847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.53817 -40.74092 -39.73511 -36.02706 -34.98848 -34.00401 -32.80383 -32.03636 -29.13510 -27.57085 -26.44037 -25.74691 -24.26583 -23.06391 -21.91746 -20.92961 -19.80561 -19.33051 -18.78657 -17.35297 -17.08704 -16.88627 -16.64157 -16.28330 -15.74079 -15.69686 -15.27415 -14.71631 -14.61532 -14.33332 -14.07001 -13.87467 -13.79750 -13.65961 -13.28918 -12.94216 -12.91902 -12.69996 -12.62824 -12.16909 -12.06967 -11.57262 -11.48715 -11.12838 -10.91928 -10.85698 -10.77743 -10.08923 -9.52745 -9.00155 -7.95512 -5.23831 0.32236 1.11493 1.48241 1.49209 1.57812 1.84003 2.27840 2.31066 2.55763 3.37107 3.60508 3.69468 3.75697 3.79300 3.88875 3.94438 4.15492 4.32201 4.35775 4.40243 4.62353 4.62896 4.71090 4.74121 4.79331 4.87636 4.92898 4.98921 5.11501 5.20454 5.27792 5.34337 5.36900 5.48579 5.54714 5.65887 6.02541 6.28233 6.53250 7.17982 7.33248 8.10295 8.32708 9.27777 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.003087 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.495461 B = 9067.953997 C = 9820.912085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.068 3.932 3 O -0.180 6.180 4 C -0.029 4.029 5 C -0.203 4.203 6 C -0.274 4.274 7 C 0.583 3.417 8 O -0.578 6.578 9 N -0.712 5.712 10 C 0.142 3.858 11 C -0.103 4.103 12 C -0.153 4.153 13 C 0.144 3.856 14 N -0.720 5.720 15 C -0.243 4.243 16 H 0.076 0.924 17 C -0.075 4.075 18 N -0.969 5.969 19 Si 0.972 3.028 20 H -0.287 1.287 21 H -0.296 1.296 22 H -0.270 1.270 23 C -0.134 4.134 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.248 0.752 28 H 0.171 0.829 29 H 0.409 0.591 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.058 0.942 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.919 18.026 -1.947 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.015 3.985 3 O -0.076 6.076 4 C -0.093 4.093 5 C -0.222 4.222 6 C -0.278 4.278 7 C 0.372 3.628 8 O -0.460 6.460 9 N -0.363 5.363 10 C 0.018 3.982 11 C -0.121 4.121 12 C -0.194 4.194 13 C 0.034 3.966 14 N -0.358 5.358 15 C -0.374 4.374 16 H 0.094 0.906 17 C -0.267 4.267 18 N -0.620 5.620 19 Si 0.801 3.199 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.195 1.195 23 C -0.173 4.173 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.264 0.736 28 H 0.189 0.811 29 H 0.245 0.755 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.745 17.961 -2.083 22.712 hybrid contribution 1.806 -0.619 0.113 1.912 sum -11.939 17.342 -1.970 21.146 Atomic orbital electron populations 1.20497 0.82628 1.04873 1.04716 1.23161 0.95036 0.83152 0.97171 1.83795 1.17978 1.34624 1.71220 1.24647 0.83516 0.96717 1.04466 1.23167 0.96289 0.95513 1.07256 1.21282 0.95038 0.93288 1.18187 1.17493 0.85156 0.84630 0.75477 1.90730 1.17729 1.84832 1.52743 1.45804 1.10145 1.06052 1.74274 1.21325 0.96097 0.78816 1.01921 1.22489 0.96376 0.94900 0.98372 1.23742 1.00101 0.99519 0.96036 1.21422 0.85130 0.94980 0.95060 1.42313 1.09932 1.64212 1.19385 1.19672 0.92677 1.25393 0.99690 0.90568 1.25546 1.00195 1.03157 0.97817 1.69810 1.23112 1.52228 1.16806 0.85156 0.79090 0.78313 0.77304 1.21415 1.22302 1.19467 1.23346 0.99659 0.94332 0.99961 0.88171 0.89104 0.89124 0.73581 0.81127 0.75544 0.91738 0.91230 0.90171 0.89092 0.93364 0.92130 0.79353 0.94009 0.92317 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 9.14 71.24 0.65 -0.54 16 2 C 0.07 1.45 7.37 25.26 0.19 1.63 16 3 O -0.18 -3.34 10.52 4.46 0.05 -3.29 16 4 C -0.03 -0.41 12.03 66.89 0.80 0.39 16 5 C -0.20 -3.73 10.60 23.65 0.25 -3.48 16 6 C -0.27 -6.52 6.31 -18.99 -0.12 -6.64 16 7 C 0.58 16.29 7.81 86.65 0.68 16.96 16 8 O -0.58 -18.97 15.66 -4.06 -0.06 -19.03 16 9 N -0.71 -18.02 5.55 -466.41 -2.59 -20.61 16 10 C 0.14 3.68 5.50 86.38 0.47 4.15 16 11 C -0.10 -2.96 3.62 -10.27 -0.04 -2.99 16 12 C -0.15 -4.89 7.44 31.18 0.23 -4.66 16 13 C 0.14 5.48 4.57 45.58 0.21 5.68 16 14 N -0.72 -35.53 5.31 -320.15 -1.70 -37.22 16 15 C -0.24 -13.28 9.97 84.03 0.84 -12.44 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 18 N -0.97 -58.47 13.06 21.65 0.28 -58.18 16 19 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C -0.13 -4.08 7.39 31.12 0.23 -3.85 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 26 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 27 H 0.25 1.29 8.06 -2.91 -0.02 1.26 16 28 H 0.17 2.54 7.74 -2.91 -0.02 2.52 16 29 H 0.41 9.19 7.64 -92.71 -0.71 8.48 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.81 7.87 -2.39 -0.02 1.79 16 32 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.09 2.51 7.92 -2.39 -0.02 2.49 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 2.31 8.10 -2.39 -0.02 2.29 16 36 H 0.37 19.76 7.90 -92.71 -0.73 19.02 16 37 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.11 2.66 8.10 -2.39 -0.02 2.64 16 Total: -1.00 -69.35 334.58 2.50 -66.86 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.37 Total: 33.46 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 4.86 Total: -9.56 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -4.01 Total: -116.02 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.02 Total: -22.32 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.35 2.50 -66.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090916560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.779 kcal (2) G-P(sol) polarization free energy of solvation -69.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds