Wall clock time and date at job start Tue Mar 31 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40362 * 126.64371 * 2 1 4 4 C 1.35126 * 107.11593 * 180.26044 * 3 2 1 5 5 O 1.33931 * 108.76631 * 359.97438 * 4 3 2 6 6 C 1.34911 * 109.38652 * 0.02562 * 5 4 3 7 7 C 1.46662 * 125.99244 * 179.97438 * 6 5 4 8 8 O 1.21694 * 120.00438 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99520 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99430 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46747 * 180.02562 * 10 9 7 12 12 C 1.53787 * 113.61392 * 274.13927 * 11 10 9 13 13 C 1.53958 * 87.02062 * 220.04727 * 12 11 10 14 14 N 1.46496 * 113.53917 * 270.81178 * 13 12 11 15 15 C 1.36933 * 120.00077 * 252.49568 * 14 13 12 16 16 H 1.08003 * 120.00017 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00127 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99810 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00141 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47285 * 89.99623 * 19 17 15 21 21 H 1.48500 * 109.47563 * 209.99914 * 19 17 15 22 22 H 1.48501 * 109.47083 * 330.00080 * 19 17 15 23 23 C 1.53782 * 113.61618 * 176.53230 * 11 10 9 24 24 H 1.09007 * 109.47508 * 269.68581 * 1 2 3 25 25 H 1.08993 * 109.47419 * 29.69381 * 1 2 3 26 26 H 1.09006 * 109.46890 * 149.69196 * 1 2 3 27 27 H 1.07996 * 126.44143 * 0.25732 * 3 2 1 28 28 H 1.08002 * 125.61763 * 180.02562 * 4 3 2 29 29 H 0.97000 * 120.00038 * 0.02562 * 9 7 6 30 30 H 1.09001 * 109.47523 * 299.99921 * 10 9 7 31 31 H 1.08997 * 109.47037 * 60.00703 * 10 9 7 32 32 H 1.09002 * 112.85520 * 45.33090 * 11 10 9 33 33 H 1.08999 * 113.61510 * 334.56593 * 12 11 10 34 34 H 1.09000 * 113.61668 * 105.46769 * 12 11 10 35 35 H 1.08997 * 113.74477 * 139.94243 * 13 12 11 36 36 H 0.97004 * 120.00001 * 72.48720 * 14 13 12 37 37 H 0.97005 * 120.00044 * 179.97438 * 18 17 15 38 38 H 1.09001 * 113.61199 * 254.53090 * 23 11 10 39 39 H 1.08994 * 113.61401 * 25.42875 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0059 5 8 3.6005 -0.6647 -0.0089 6 6 2.3220 -1.0955 -0.0056 7 6 1.8842 -2.4953 -0.0078 8 8 0.6968 -2.7615 -0.0049 9 7 2.7972 -3.4868 -0.0132 10 6 2.3599 -4.8850 -0.0149 11 6 3.5844 -5.8022 -0.0205 12 6 4.1343 -6.0872 -1.4281 13 6 4.3580 -7.5366 -0.9600 14 7 5.6707 -7.7579 -0.3484 15 6 6.6297 -8.4655 -1.0228 16 1 6.4182 -8.8608 -2.0054 17 6 7.8738 -8.6747 -0.4436 18 7 8.7953 -9.3552 -1.0916 19 14 8.2400 -7.9904 1.2555 20 1 7.8682 -8.9947 2.2843 21 1 9.6889 -7.6837 1.3640 22 1 7.4538 -6.7488 1.4691 23 6 3.2345 -7.2974 0.0626 24 1 -0.3634 -0.0056 1.0277 25 1 -0.3634 0.8926 -0.5090 26 1 -0.3633 -0.8873 -0.5186 27 1 2.0306 2.1594 0.0039 28 1 4.5046 1.2918 -0.0070 29 1 3.7437 -3.2746 -0.0152 30 1 1.7640 -5.0805 0.8767 31 1 1.7581 -5.0764 -0.9033 32 1 4.3487 -5.4924 0.6923 33 1 3.3870 -5.9933 -2.2161 34 1 5.0572 -5.5525 -1.6529 35 1 4.1107 -8.2844 -1.7134 36 1 5.8606 -7.4031 0.5342 37 1 9.6648 -9.5011 -0.6871 38 1 3.4322 -7.7384 1.0396 39 1 2.2408 -7.5350 -0.3170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090917748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:09 Heat of formation + Delta-G solvation = 7.538453 kcal Electronic energy + Delta-G solvation = -20894.596606 eV Core-core repulsion = 17611.879246 eV Total energy + Delta-G solvation = -3282.717361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.96011 -39.74298 -38.60163 -35.10688 -34.17520 -33.24823 -31.00059 -30.52478 -28.47208 -27.01629 -25.20480 -23.77899 -22.86385 -21.86590 -21.33195 -20.17036 -18.79883 -18.10030 -17.66922 -16.66262 -16.27355 -16.12732 -15.28046 -14.92441 -14.56784 -14.34125 -13.74615 -13.61123 -13.53141 -13.31504 -13.25964 -12.83032 -12.75869 -12.53053 -12.08769 -12.04399 -11.62313 -11.39447 -10.93960 -10.54507 -10.44498 -10.21818 -10.02562 -9.97652 -9.69969 -9.57423 -9.25702 -8.94300 -8.79925 -7.33210 -5.82353 -3.18643 0.82264 2.05710 2.46821 3.00075 3.10755 3.32568 3.35575 3.41272 4.40758 4.49041 4.53554 4.64826 4.88858 4.90403 5.04960 5.18363 5.24382 5.36547 5.38651 5.46965 5.47782 5.48514 5.71429 5.75544 5.80104 5.85388 5.89964 6.09536 6.10701 6.20340 6.26323 6.45255 6.58382 6.60180 6.70367 6.86737 7.34663 7.94622 7.95558 8.37367 9.15031 9.87267 10.06417 11.35765 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024782 B = 0.003421 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.582517 B = 8182.786205 C = 8901.170440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.090 4.090 3 C -0.227 4.227 4 C -0.003 4.003 5 O -0.162 6.162 6 C -0.085 4.085 7 C 0.600 3.400 8 O -0.523 6.523 9 N -0.713 5.713 10 C 0.130 3.870 11 C -0.125 4.125 12 C -0.167 4.167 13 C 0.173 3.827 14 N -0.730 5.730 15 C -0.247 4.247 16 H 0.092 0.908 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.278 1.278 23 C -0.148 4.148 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.155 0.845 28 H 0.210 0.790 29 H 0.407 0.593 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.068 0.932 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.375 20.261 3.168 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.246 4.246 4 C -0.073 4.073 5 O -0.057 6.057 6 C -0.137 4.137 7 C 0.386 3.614 8 O -0.402 6.402 9 N -0.364 5.364 10 C 0.008 3.992 11 C -0.143 4.143 12 C -0.208 4.208 13 C 0.061 3.939 14 N -0.370 5.370 15 C -0.377 4.377 16 H 0.110 0.890 17 C -0.190 4.190 18 N -0.579 5.579 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.187 4.187 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.173 0.827 28 H 0.227 0.773 29 H 0.242 0.758 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.807 19.641 2.997 24.779 hybrid contribution 0.976 1.002 1.260 1.883 sum -13.831 20.643 4.258 25.210 Atomic orbital electron populations 1.20423 0.88208 1.03573 1.02887 1.20653 0.97695 0.91002 0.99915 1.21748 0.92459 1.00156 1.10271 1.24386 1.00003 0.80627 1.02306 1.84084 1.28339 1.22724 1.70601 1.21940 0.81516 0.94949 1.15268 1.16541 0.85808 0.81848 0.77154 1.90837 1.15718 1.82415 1.51256 1.45990 1.10052 1.06576 1.73733 1.21556 0.97119 0.78333 1.02216 1.22770 0.96414 0.95123 1.00029 1.23898 1.00581 1.01916 0.94429 1.21040 0.85074 0.93869 0.93915 1.42523 1.10606 1.65027 1.18863 1.19116 0.91560 1.25835 1.01167 0.89005 1.24684 0.96213 1.00103 0.98044 1.69700 1.05342 1.44813 1.38061 0.86560 0.77397 0.78893 0.85700 1.20989 1.21654 1.20407 1.23458 1.00092 0.93815 1.01362 0.90841 0.91522 0.89446 0.82686 0.77320 0.75823 0.91387 0.90985 0.89161 0.90886 0.91294 0.90979 0.80519 0.92967 0.91355 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.81 36.01 0.35 -0.55 16 2 C -0.09 -0.98 6.20 -104.43 -0.65 -1.63 16 3 C -0.23 -1.92 10.83 -39.89 -0.43 -2.35 16 4 C 0.00 -0.03 12.08 29.63 0.36 0.33 16 5 O -0.16 -1.77 10.40 5.00 0.05 -1.72 16 6 C -0.08 -1.04 7.13 -36.79 -0.26 -1.30 16 7 C 0.60 8.17 7.79 -12.86 -0.10 8.07 16 8 O -0.52 -8.21 14.74 5.19 0.08 -8.13 16 9 N -0.71 -8.87 5.55 -61.62 -0.34 -9.21 16 10 C 0.13 1.64 5.50 -4.04 -0.02 1.61 16 11 C -0.12 -1.72 3.62 -89.80 -0.33 -2.05 16 12 C -0.17 -2.63 7.44 -25.82 -0.19 -2.82 16 13 C 0.17 3.17 4.57 -67.02 -0.31 2.86 16 14 N -0.73 -16.76 5.11 -52.55 -0.27 -17.03 16 15 C -0.25 -6.84 10.45 -15.06 -0.16 -7.00 16 16 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 17 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -28.96 13.97 55.49 0.78 -28.18 16 19 Si 0.88 21.73 27.73 -169.99 -4.71 17.01 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 23 C -0.15 -2.15 7.39 -25.92 -0.19 -2.34 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.99 6.46 -51.93 -0.34 0.65 16 27 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.21 0.78 8.06 -52.49 -0.42 0.35 16 29 H 0.41 4.65 8.23 -40.82 -0.34 4.32 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 32 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 36 H 0.36 8.14 5.76 -40.82 -0.24 7.91 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -32.70 330.32 -7.01 -39.71 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.54 Total: 9.67 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.02 Total: -7.11 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.16 Total: -54.41 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.13 Total: -9.85 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.70 -7.01 -39.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090917748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.248 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds