Wall clock time and date at job start Tue Mar 31 2020 01:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40362 * 126.64371 * 2 1 4 4 C 1.35126 * 107.11593 * 180.26044 * 3 2 1 5 5 O 1.33931 * 108.76631 * 359.97438 * 4 3 2 6 6 C 1.34911 * 109.38652 * 0.02562 * 5 4 3 7 7 C 1.46662 * 125.99244 * 179.97438 * 6 5 4 8 8 O 1.21694 * 120.00438 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99520 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99430 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46747 * 180.02562 * 10 9 7 12 12 C 1.53787 * 113.61392 * 274.13927 * 11 10 9 13 13 C 1.53958 * 87.02062 * 220.04727 * 12 11 10 14 14 N 1.46496 * 113.53917 * 270.81178 * 13 12 11 15 15 C 1.36933 * 120.00077 * 252.49568 * 14 13 12 16 16 H 1.08003 * 120.00017 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00127 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99810 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00141 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47285 * 89.99623 * 19 17 15 21 21 H 1.48500 * 109.47563 * 209.99914 * 19 17 15 22 22 H 1.48501 * 109.47083 * 330.00080 * 19 17 15 23 23 C 1.53782 * 113.61618 * 176.53230 * 11 10 9 24 24 H 1.09007 * 109.47508 * 269.68581 * 1 2 3 25 25 H 1.08993 * 109.47419 * 29.69381 * 1 2 3 26 26 H 1.09006 * 109.46890 * 149.69196 * 1 2 3 27 27 H 1.07996 * 126.44143 * 0.25732 * 3 2 1 28 28 H 1.08002 * 125.61763 * 180.02562 * 4 3 2 29 29 H 0.97000 * 120.00038 * 0.02562 * 9 7 6 30 30 H 1.09001 * 109.47523 * 299.99921 * 10 9 7 31 31 H 1.08997 * 109.47037 * 60.00703 * 10 9 7 32 32 H 1.09002 * 112.85520 * 45.33090 * 11 10 9 33 33 H 1.08999 * 113.61510 * 334.56593 * 12 11 10 34 34 H 1.09000 * 113.61668 * 105.46769 * 12 11 10 35 35 H 1.08997 * 113.74477 * 139.94243 * 13 12 11 36 36 H 0.97004 * 120.00001 * 72.48720 * 14 13 12 37 37 H 0.97005 * 120.00044 * 179.97438 * 18 17 15 38 38 H 1.09001 * 113.61199 * 254.53090 * 23 11 10 39 39 H 1.08994 * 113.61401 * 25.42875 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 -0.0059 5 8 3.6005 -0.6647 -0.0089 6 6 2.3220 -1.0955 -0.0056 7 6 1.8842 -2.4953 -0.0078 8 8 0.6968 -2.7615 -0.0049 9 7 2.7972 -3.4868 -0.0132 10 6 2.3599 -4.8850 -0.0149 11 6 3.5844 -5.8022 -0.0205 12 6 4.1343 -6.0872 -1.4281 13 6 4.3580 -7.5366 -0.9600 14 7 5.6707 -7.7579 -0.3484 15 6 6.6297 -8.4655 -1.0228 16 1 6.4182 -8.8608 -2.0054 17 6 7.8738 -8.6747 -0.4436 18 7 8.7953 -9.3552 -1.0916 19 14 8.2400 -7.9904 1.2555 20 1 7.8682 -8.9947 2.2843 21 1 9.6889 -7.6837 1.3640 22 1 7.4538 -6.7488 1.4691 23 6 3.2345 -7.2974 0.0626 24 1 -0.3634 -0.0056 1.0277 25 1 -0.3634 0.8926 -0.5090 26 1 -0.3633 -0.8873 -0.5186 27 1 2.0306 2.1594 0.0039 28 1 4.5046 1.2918 -0.0070 29 1 3.7437 -3.2746 -0.0152 30 1 1.7640 -5.0805 0.8767 31 1 1.7581 -5.0764 -0.9033 32 1 4.3487 -5.4924 0.6923 33 1 3.3870 -5.9933 -2.2161 34 1 5.0572 -5.5525 -1.6529 35 1 4.1107 -8.2844 -1.7134 36 1 5.8606 -7.4031 0.5342 37 1 9.6648 -9.5011 -0.6871 38 1 3.4322 -7.7384 1.0396 39 1 2.2408 -7.5350 -0.3170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090917748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:07 Heat of formation + Delta-G solvation = -15.204152 kcal Electronic energy + Delta-G solvation = -20895.582800 eV Core-core repulsion = 17611.879246 eV Total energy + Delta-G solvation = -3283.703554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.68665 -40.83176 -39.85791 -36.26419 -35.26644 -34.77650 -32.71925 -31.50789 -29.47619 -28.02663 -26.47118 -25.48491 -23.98037 -23.04356 -22.15124 -21.10911 -20.14249 -19.58630 -19.06834 -17.46702 -17.21381 -17.03752 -16.61945 -16.31193 -15.94887 -15.60382 -15.04464 -14.87343 -14.62778 -14.47471 -14.12967 -13.97545 -13.89630 -13.53159 -13.38148 -13.12076 -13.03103 -12.79280 -12.70788 -12.20234 -11.89473 -11.67899 -11.60758 -11.23218 -10.98491 -10.84411 -10.68636 -10.25781 -9.57495 -9.30481 -8.03494 -5.37157 0.01207 1.36745 1.39697 1.40793 1.47754 1.70236 2.06246 2.23036 2.47390 3.26713 3.50620 3.66145 3.72367 3.79237 3.85543 3.95382 3.98733 4.26039 4.35405 4.52371 4.61903 4.67407 4.70759 4.75706 4.79187 4.92376 4.95826 5.06275 5.10270 5.15429 5.23440 5.29869 5.39617 5.48317 5.53085 5.80017 5.85775 6.22038 6.40637 6.97785 7.07073 7.84004 8.02421 9.18088 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024782 B = 0.003421 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.582517 B = 8182.786205 C = 8901.170440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.095 4.095 3 C -0.235 4.235 4 C 0.011 3.989 5 O -0.175 6.175 6 C -0.122 4.122 7 C 0.598 3.402 8 O -0.553 6.553 9 N -0.710 5.710 10 C 0.138 3.862 11 C -0.107 4.107 12 C -0.157 4.157 13 C 0.145 3.855 14 N -0.734 5.734 15 C -0.233 4.233 16 H 0.057 0.943 17 C -0.065 4.065 18 N -0.985 5.985 19 Si 0.956 3.044 20 H -0.278 1.278 21 H -0.296 1.296 22 H -0.250 1.250 23 C -0.130 4.130 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.183 0.817 28 H 0.252 0.748 29 H 0.411 0.589 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.367 0.633 37 H 0.258 0.742 38 H 0.069 0.931 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.405 22.984 4.621 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.254 4.254 4 C -0.059 4.059 5 O -0.071 6.071 6 C -0.173 4.173 7 C 0.386 3.614 8 O -0.435 6.435 9 N -0.360 5.360 10 C 0.015 3.985 11 C -0.126 4.126 12 C -0.197 4.197 13 C 0.036 3.964 14 N -0.376 5.376 15 C -0.364 4.364 16 H 0.075 0.925 17 C -0.257 4.257 18 N -0.635 5.635 19 Si 0.783 3.217 20 H -0.204 1.204 21 H -0.223 1.223 22 H -0.175 1.175 23 C -0.170 4.170 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.201 0.799 28 H 0.268 0.732 29 H 0.247 0.753 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.893 22.393 4.450 27.818 hybrid contribution 1.242 0.210 0.687 1.435 sum -14.651 22.603 5.136 27.421 Atomic orbital electron populations 1.20431 0.87803 1.03650 1.03117 1.21048 0.98367 0.91703 0.98701 1.22107 0.92199 1.00811 1.10271 1.25329 1.01523 0.79667 0.99354 1.84070 1.27707 1.24305 1.70997 1.21752 0.82480 0.94598 1.18490 1.16740 0.85503 0.82638 0.76565 1.90811 1.16756 1.83091 1.52803 1.45945 1.10226 1.06395 1.73461 1.21434 0.96278 0.78185 1.02565 1.22587 0.96643 0.95066 0.98293 1.23759 1.00456 0.99132 0.96357 1.21385 0.84448 0.95158 0.95411 1.42452 1.11387 1.64809 1.18950 1.19074 0.92566 1.24799 0.99915 0.92521 1.25524 0.96134 1.01308 1.02696 1.69888 1.05914 1.47314 1.40376 0.85400 0.76945 0.79215 0.80146 1.20442 1.22305 1.17483 1.23353 0.99593 0.93928 1.00082 0.90456 0.89235 0.91546 0.79925 0.73174 0.75277 0.90880 0.90840 0.89464 0.88984 0.93124 0.92242 0.79990 0.93317 0.91243 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.81 71.24 0.70 -1.00 16 2 C -0.10 -1.93 6.20 -19.74 -0.12 -2.05 16 3 C -0.24 -3.27 10.83 22.07 0.24 -3.03 16 4 C 0.01 0.13 12.08 67.10 0.81 0.94 16 5 O -0.17 -3.50 10.40 -5.02 -0.05 -3.55 16 6 C -0.12 -2.87 7.13 24.07 0.17 -2.70 16 7 C 0.60 15.90 7.79 86.44 0.67 16.57 16 8 O -0.55 -17.25 14.74 -4.33 -0.06 -17.32 16 9 N -0.71 -16.73 5.55 -467.10 -2.59 -19.32 16 10 C 0.14 3.18 5.50 86.38 0.47 3.65 16 11 C -0.11 -2.72 3.62 -10.26 -0.04 -2.75 16 12 C -0.16 -4.70 7.44 31.18 0.23 -4.46 16 13 C 0.15 5.22 4.57 45.58 0.21 5.43 16 14 N -0.73 -33.30 5.11 -320.16 -1.64 -34.94 16 15 C -0.23 -13.14 10.45 84.03 0.88 -12.27 16 16 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 17 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 18 N -0.98 -63.05 13.97 21.65 0.30 -62.75 16 19 Si 0.96 44.87 27.73 68.60 1.90 46.78 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.25 -10.47 6.52 99.48 0.65 -9.82 16 23 C -0.13 -3.48 7.39 31.12 0.23 -3.25 16 24 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.50 6.46 -2.38 -0.02 1.48 16 27 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 28 H 0.25 0.69 8.06 -2.91 -0.02 0.67 16 29 H 0.41 8.85 8.23 -92.71 -0.76 8.09 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 1.71 7.88 -2.39 -0.02 1.69 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.09 2.42 7.92 -2.39 -0.02 2.40 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 36 H 0.37 15.83 5.76 -92.71 -0.53 15.30 16 37 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.11 2.38 8.10 -2.39 -0.02 2.36 16 Total: -1.00 -73.19 330.32 2.50 -70.69 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.28 Total: 28.68 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 4.92 Total: -8.28 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -3.93 Total: -117.01 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.12 Total: -20.87 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.78 kcal Total: -73.19 2.50 -70.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090917748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.490 kcal (2) G-P(sol) polarization free energy of solvation -73.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds