Wall clock time and date at job start Tue Mar 31 2020 00:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34170 * 125.43350 * 2 1 4 4 C 1.47016 * 105.95422 * 179.97438 * 3 2 1 5 5 C 1.47388 * 127.19569 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99511 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99927 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00020 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47405 * 179.97438 * 8 7 5 10 10 C 1.53781 * 113.61492 * 174.99701 * 9 8 7 11 11 C 1.53781 * 87.08070 * 140.06794 * 10 9 8 12 12 N 1.46506 * 113.61361 * 89.11956 * 11 10 9 13 13 C 1.36932 * 119.99948 * 156.53166 * 12 11 10 14 14 H 1.08003 * 120.00194 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99870 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99941 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46920 * 60.00171 * 17 15 13 19 19 H 1.48504 * 109.47206 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47429 * 300.00144 * 17 15 13 21 21 C 1.53773 * 87.17302 * 334.52628 * 11 10 9 22 22 C 1.36415 * 105.61646 * 0.22686 * 4 3 2 23 23 O 1.33657 * 108.39337 * 359.62981 * 22 4 3 24 24 H 1.08997 * 109.47418 * 90.00367 * 1 2 3 25 25 H 1.09003 * 109.46830 * 209.99838 * 1 2 3 26 26 H 1.08997 * 109.47880 * 329.99776 * 1 2 3 27 27 H 1.08008 * 127.02810 * 0.02562 * 3 2 1 28 28 H 0.96997 * 120.00572 * 359.97438 * 7 5 4 29 29 H 1.09002 * 109.46995 * 59.99707 * 8 7 5 30 30 H 1.08998 * 109.46746 * 299.99904 * 8 7 5 31 31 H 1.08998 * 112.84975 * 43.80400 * 9 8 7 32 32 H 1.09001 * 113.61537 * 25.52248 * 10 9 8 33 33 H 1.08998 * 113.61680 * 254.61401 * 10 9 8 34 34 H 1.09002 * 113.61408 * 219.93560 * 11 10 9 35 35 H 0.96997 * 119.99707 * 336.52824 * 12 11 10 36 36 H 0.97000 * 119.99576 * 179.97438 * 16 15 13 37 37 H 1.09007 * 113.61678 * 140.01927 * 21 11 10 38 38 H 1.09000 * 113.61916 * 270.92600 * 21 11 10 39 39 H 1.07998 * 125.80534 * 179.74651 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6030 0.0006 5 6 4.9024 1.4127 0.0003 6 8 4.8318 2.6268 0.0000 7 7 6.1067 0.8076 0.0005 8 6 7.3308 1.6125 0.0008 9 6 8.5494 0.6874 0.0015 10 6 9.8888 1.4330 -0.1210 11 6 10.4475 0.4370 0.9090 12 7 11.0093 -0.7753 0.3081 13 6 11.9434 -1.5080 0.9906 14 1 12.2662 -1.1920 1.9716 15 6 12.4753 -2.6570 0.4215 16 7 12.0823 -3.0418 -0.7742 17 14 13.7501 -3.6562 1.3522 18 1 13.1695 -4.1271 2.6353 19 1 14.1563 -4.8264 0.5331 20 1 14.9383 -2.8092 1.6278 21 6 9.0044 0.2639 1.4110 22 6 3.5790 -0.7581 -0.0043 23 8 2.2852 -1.0935 0.0006 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3635 0.8899 0.5138 27 1 1.9594 2.1231 0.0004 28 1 6.1630 -0.1607 0.0012 29 1 7.3519 2.2414 0.8908 30 1 7.3522 2.2415 -0.8892 31 1 8.4485 -0.1461 -0.6935 32 1 9.8514 2.4604 0.2410 33 1 10.3482 1.3465 -1.1056 34 1 11.1129 0.8938 1.6417 35 1 10.7196 -1.0589 -0.5730 36 1 12.4543 -3.8445 -1.1720 37 1 8.7501 -0.7659 1.6624 38 1 8.7254 0.9722 2.1911 39 1 4.4103 -1.4475 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090998294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:52 Heat of formation + Delta-G solvation = 2.137564 kcal Electronic energy + Delta-G solvation = -20539.709802 eV Core-core repulsion = 17256.758241 eV Total energy + Delta-G solvation = -3282.951561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.79303 -39.59108 -38.40128 -34.68072 -33.37513 -33.23141 -32.24229 -30.16859 -27.79655 -26.63244 -25.08372 -24.09824 -23.26474 -21.64928 -21.31253 -19.89453 -18.40378 -17.94661 -17.26221 -16.56978 -16.27117 -15.90072 -15.24324 -14.88348 -14.64547 -14.12886 -13.93057 -13.52131 -13.40156 -13.35438 -13.21829 -13.02891 -12.91097 -12.29223 -12.11521 -11.93071 -11.40566 -11.06335 -10.85023 -10.51552 -10.26029 -10.20305 -9.98918 -9.85459 -9.71146 -9.49831 -9.04644 -8.90508 -8.81073 -7.02826 -5.83259 -3.12326 1.15144 1.80695 2.56243 3.14477 3.30671 3.40681 3.45342 3.46126 4.27198 4.46681 4.53566 4.71224 4.96151 5.02518 5.05128 5.08177 5.18230 5.28531 5.32901 5.43006 5.50626 5.60040 5.67524 5.73924 5.85408 5.94427 6.08740 6.09848 6.19735 6.35021 6.39393 6.57142 6.71925 6.74718 6.87662 7.01870 7.49166 7.66276 8.19275 8.36051 9.46660 10.04086 10.38378 11.39140 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.002969 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.291313 B = 9427.127564 C =10251.267691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.164 4.164 4 C -0.230 4.230 5 C 0.583 3.417 6 O -0.542 6.542 7 N -0.720 5.720 8 C 0.132 3.868 9 C -0.120 4.120 10 C -0.147 4.147 11 C 0.167 3.833 12 N -0.706 5.706 13 C -0.243 4.243 14 H 0.072 0.928 15 C -0.013 4.013 16 N -0.933 5.933 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.169 4.169 22 C 0.021 3.979 23 O -0.173 6.173 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.158 0.842 28 H 0.400 0.600 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.689 6.012 1.004 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.183 4.183 4 C -0.235 4.235 5 C 0.371 3.629 6 O -0.421 6.421 7 N -0.371 5.371 8 C 0.009 3.991 9 C -0.139 4.139 10 C -0.186 4.186 11 C 0.055 3.945 12 N -0.345 5.345 13 C -0.374 4.374 14 H 0.090 0.910 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.210 4.210 22 C -0.049 4.049 23 O -0.069 6.069 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.176 0.824 28 H 0.234 0.766 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -20.680 6.511 1.105 21.709 hybrid contribution 0.775 -1.061 0.140 1.321 sum -19.905 5.450 1.244 20.675 Atomic orbital electron populations 1.20326 0.84670 1.04235 1.03714 1.22325 0.94177 0.83663 1.06510 1.22483 0.90016 0.99680 1.06136 1.21555 0.94793 0.93315 1.13830 1.17287 0.82294 0.87075 0.76279 1.90771 1.87246 1.13702 1.50365 1.45919 1.05592 1.10552 1.75019 1.21504 0.82032 0.93641 1.01910 1.22768 0.92716 0.98565 0.99849 1.23420 0.95128 0.98667 1.01427 1.21055 0.91634 0.88074 0.93759 1.42161 1.47603 1.24854 1.19844 1.19244 1.14691 1.03780 0.99674 0.91043 1.24763 1.00565 0.98676 0.96859 1.69649 1.46671 1.26175 1.15632 0.86243 0.81430 0.79615 0.78746 1.21215 1.21674 1.21183 1.23939 1.01569 1.01018 0.94436 1.24491 0.84288 0.95486 1.00669 1.83730 1.16491 1.35510 1.71138 0.89945 0.90373 0.89182 0.82419 0.76621 0.91419 0.91657 0.88868 0.90389 0.91283 0.92040 0.78120 0.93376 0.91484 0.91376 0.77013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.40 36.01 0.37 -0.02 16 2 C -0.02 -0.17 7.28 -35.74 -0.26 -0.43 16 3 C -0.16 -1.81 10.90 -37.46 -0.41 -2.22 16 4 C -0.23 -2.79 6.31 -103.27 -0.65 -3.44 16 5 C 0.58 8.34 7.81 -12.54 -0.10 8.25 16 6 O -0.54 -9.69 16.98 5.27 0.09 -9.60 16 7 N -0.72 -9.01 5.55 -61.40 -0.34 -9.35 16 8 C 0.13 1.78 5.52 -4.04 -0.02 1.76 16 9 C -0.12 -1.76 3.64 -89.67 -0.33 -2.09 16 10 C -0.15 -2.31 7.38 -25.92 -0.19 -2.50 16 11 C 0.17 3.20 4.55 -67.12 -0.31 2.90 16 12 N -0.71 -17.12 5.31 -52.64 -0.28 -17.40 16 13 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 14 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -27.55 13.06 55.49 0.72 -26.82 16 17 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.17 -2.75 7.45 -25.78 -0.19 -2.94 16 22 C 0.02 0.20 11.61 30.08 0.35 0.55 16 23 O -0.17 -1.75 10.52 7.66 0.08 -1.67 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 28 H 0.40 4.12 7.44 -40.82 -0.30 3.81 16 29 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 35 H 0.38 9.85 7.90 -40.82 -0.32 9.53 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 38 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 39 H 0.21 1.31 7.47 -52.49 -0.39 0.92 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -33.13 336.60 -7.26 -40.39 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.61 Total: 9.81 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.98 Total: -7.38 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.10 Total: -53.58 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.17 Total: -11.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.13 -7.26 -40.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090998294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.525 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds