Wall clock time and date at job start Tue Mar 31 2020 00:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34170 * 125.43350 * 2 1 4 4 C 1.47016 * 105.95422 * 179.97438 * 3 2 1 5 5 C 1.47388 * 127.19569 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99511 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99927 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00020 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47405 * 179.97438 * 8 7 5 10 10 C 1.53781 * 113.61492 * 174.99701 * 9 8 7 11 11 C 1.53781 * 87.08070 * 140.06794 * 10 9 8 12 12 N 1.46506 * 113.61361 * 89.11956 * 11 10 9 13 13 C 1.36932 * 119.99948 * 156.53166 * 12 11 10 14 14 H 1.08003 * 120.00194 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99870 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99941 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46920 * 60.00171 * 17 15 13 19 19 H 1.48504 * 109.47206 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47429 * 300.00144 * 17 15 13 21 21 C 1.53773 * 87.17302 * 334.52628 * 11 10 9 22 22 C 1.36415 * 105.61646 * 0.22686 * 4 3 2 23 23 O 1.33657 * 108.39337 * 359.62981 * 22 4 3 24 24 H 1.08997 * 109.47418 * 90.00367 * 1 2 3 25 25 H 1.09003 * 109.46830 * 209.99838 * 1 2 3 26 26 H 1.08997 * 109.47880 * 329.99776 * 1 2 3 27 27 H 1.08008 * 127.02810 * 0.02562 * 3 2 1 28 28 H 0.96997 * 120.00572 * 359.97438 * 7 5 4 29 29 H 1.09002 * 109.46995 * 59.99707 * 8 7 5 30 30 H 1.08998 * 109.46746 * 299.99904 * 8 7 5 31 31 H 1.08998 * 112.84975 * 43.80400 * 9 8 7 32 32 H 1.09001 * 113.61537 * 25.52248 * 10 9 8 33 33 H 1.08998 * 113.61680 * 254.61401 * 10 9 8 34 34 H 1.09002 * 113.61408 * 219.93560 * 11 10 9 35 35 H 0.96997 * 119.99707 * 336.52824 * 12 11 10 36 36 H 0.97000 * 119.99576 * 179.97438 * 16 15 13 37 37 H 1.09007 * 113.61678 * 140.01927 * 21 11 10 38 38 H 1.09000 * 113.61916 * 270.92600 * 21 11 10 39 39 H 1.07998 * 125.80534 * 179.74651 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6030 0.0006 5 6 4.9024 1.4127 0.0003 6 8 4.8318 2.6268 0.0000 7 7 6.1067 0.8076 0.0005 8 6 7.3308 1.6125 0.0008 9 6 8.5494 0.6874 0.0015 10 6 9.8888 1.4330 -0.1210 11 6 10.4475 0.4370 0.9090 12 7 11.0093 -0.7753 0.3081 13 6 11.9434 -1.5080 0.9906 14 1 12.2662 -1.1920 1.9716 15 6 12.4753 -2.6570 0.4215 16 7 12.0823 -3.0418 -0.7742 17 14 13.7501 -3.6562 1.3522 18 1 13.1695 -4.1271 2.6353 19 1 14.1563 -4.8264 0.5331 20 1 14.9383 -2.8092 1.6278 21 6 9.0044 0.2639 1.4110 22 6 3.5790 -0.7581 -0.0043 23 8 2.2852 -1.0935 0.0006 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3635 0.8899 0.5138 27 1 1.9594 2.1231 0.0004 28 1 6.1630 -0.1607 0.0012 29 1 7.3519 2.2414 0.8908 30 1 7.3522 2.2415 -0.8892 31 1 8.4485 -0.1461 -0.6935 32 1 9.8514 2.4604 0.2410 33 1 10.3482 1.3465 -1.1056 34 1 11.1129 0.8938 1.6417 35 1 10.7196 -1.0589 -0.5730 36 1 12.4543 -3.8445 -1.1720 37 1 8.7501 -0.7659 1.6624 38 1 8.7254 0.9722 2.1911 39 1 4.4103 -1.4475 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090998294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:51 Heat of formation + Delta-G solvation = -20.265010 kcal Electronic energy + Delta-G solvation = -20540.681250 eV Core-core repulsion = 17256.758241 eV Total energy + Delta-G solvation = -3283.923009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.57084 -40.77591 -39.74502 -36.04230 -35.01012 -34.08822 -33.03104 -31.97769 -28.98627 -27.39440 -26.43534 -25.79836 -24.54110 -22.94559 -22.13120 -20.92944 -19.73369 -19.33604 -18.69369 -17.34877 -17.26643 -17.03794 -16.64775 -16.32500 -15.76353 -15.71587 -15.25599 -14.72213 -14.62904 -14.35120 -14.01351 -13.81105 -13.77976 -13.71722 -13.28102 -12.92791 -12.91029 -12.70367 -12.61329 -12.19518 -12.07044 -11.60905 -11.48222 -11.18696 -10.92326 -10.87420 -10.77698 -10.12895 -9.56099 -8.99202 -7.94771 -5.22833 0.30920 1.01249 1.48715 1.50898 1.56994 1.86389 2.13469 2.28626 2.56431 3.37753 3.56599 3.64499 3.71892 3.78701 3.85375 4.04053 4.15368 4.32516 4.39420 4.40619 4.52404 4.72216 4.73391 4.74737 4.78626 4.87919 4.93805 4.99813 5.09432 5.11764 5.26106 5.35117 5.39169 5.47386 5.54410 5.66444 5.98847 6.28971 6.48586 7.13860 7.34179 8.11345 8.33847 9.28277 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.002969 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.291313 B = 9427.127564 C =10251.267691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.010 4.010 3 C -0.192 4.192 4 C -0.263 4.263 5 C 0.584 3.416 6 O -0.586 6.586 7 N -0.711 5.711 8 C 0.140 3.860 9 C -0.102 4.102 10 C -0.134 4.134 11 C 0.144 3.856 12 N -0.719 5.719 13 C -0.243 4.243 14 H 0.076 0.924 15 C -0.074 4.074 16 N -0.969 5.969 17 Si 0.972 3.028 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.279 1.279 21 C -0.153 4.153 22 C 0.040 3.960 23 O -0.177 6.177 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.157 0.843 28 H 0.411 0.589 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.375 0.625 36 H 0.251 0.749 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.784 5.842 1.810 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 C -0.212 4.212 4 C -0.268 4.268 5 C 0.373 3.627 6 O -0.468 6.468 7 N -0.362 5.362 8 C 0.017 3.983 9 C -0.120 4.120 10 C -0.173 4.173 11 C 0.034 3.966 12 N -0.358 5.358 13 C -0.375 4.375 14 H 0.094 0.906 15 C -0.267 4.267 16 N -0.619 5.619 17 Si 0.801 3.199 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.205 1.205 21 C -0.194 4.194 22 C -0.030 4.030 23 O -0.073 6.073 24 H 0.115 0.885 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.174 0.826 28 H 0.248 0.752 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.207 0.793 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -21.791 6.355 1.945 22.782 hybrid contribution 1.067 -0.955 -0.081 1.434 sum -20.723 5.401 1.864 21.497 Atomic orbital electron populations 1.20537 0.81860 1.05545 1.05014 1.22962 0.95643 0.82796 1.04463 1.22637 0.90165 1.00378 1.08000 1.21520 0.94331 0.94370 1.16547 1.17581 0.83122 0.86709 0.75326 1.90739 1.87859 1.15542 1.52662 1.45816 1.04960 1.11133 1.74282 1.21343 0.81732 0.93270 1.01941 1.22549 0.92862 0.98182 0.98452 1.23333 0.94842 0.99284 0.99880 1.21377 0.92851 0.87325 0.95086 1.42286 1.47698 1.26267 1.19525 1.19623 1.14398 1.03709 0.99737 0.90643 1.25531 1.03049 1.00183 0.97895 1.69797 1.48304 1.26607 1.17208 0.85240 0.79227 0.77890 0.77572 1.20401 1.22265 1.20541 1.23761 0.98954 1.00764 0.95911 1.25025 0.84879 0.95031 0.98111 1.83773 1.16738 1.35878 1.70903 0.88527 0.89157 0.87764 0.82578 0.75246 0.91333 0.91761 0.89704 0.87676 0.92266 0.92372 0.79303 0.94006 0.93076 0.89157 0.73946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.40 71.24 0.74 0.13 16 2 C -0.01 -0.17 7.28 24.76 0.18 0.01 16 3 C -0.19 -4.18 10.90 23.64 0.26 -3.92 16 4 C -0.26 -6.17 6.31 -18.99 -0.12 -6.29 16 5 C 0.58 16.40 7.81 86.65 0.68 17.08 16 6 O -0.59 -21.08 16.98 -4.07 -0.07 -21.15 16 7 N -0.71 -16.85 5.55 -466.42 -2.59 -19.44 16 8 C 0.14 3.55 5.52 86.38 0.48 4.03 16 9 C -0.10 -2.82 3.64 -10.18 -0.04 -2.86 16 10 C -0.13 -4.02 7.38 31.12 0.23 -3.79 16 11 C 0.14 5.37 4.55 45.51 0.21 5.57 16 12 N -0.72 -34.95 5.31 -320.45 -1.70 -36.65 16 13 C -0.24 -13.17 9.97 84.04 0.84 -12.34 16 14 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 15 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 16 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 17 Si 0.97 45.28 29.55 68.60 2.03 47.30 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 21 C -0.15 -4.75 7.45 31.21 0.23 -4.51 16 22 C 0.04 0.69 11.61 67.39 0.78 1.47 16 23 O -0.18 -3.24 10.52 4.48 0.05 -3.20 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 28 H 0.41 7.74 7.44 -92.71 -0.69 7.05 16 29 H 0.07 1.77 7.85 -2.39 -0.02 1.75 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.10 2.60 8.10 -2.39 -0.02 2.58 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 2.20 8.11 -2.39 -0.02 2.18 16 35 H 0.37 19.44 7.90 -92.71 -0.73 18.71 16 36 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.09 2.42 7.91 -2.39 -0.02 2.40 16 39 H 0.24 2.33 7.47 -2.91 -0.02 2.31 16 Total: -1.00 -71.85 336.60 2.58 -69.27 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.35 Total: 30.65 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 4.93 Total: -9.12 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -4.01 Total: -113.76 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.02 Total: -24.34 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.85 2.58 -69.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090998294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.005 kcal (2) G-P(sol) polarization free energy of solvation -71.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds