Wall clock time and date at job start Tue Mar 31 2020 00:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30857 * 125.88483 * 2 1 4 4 N 1.40078 * 108.30299 * 180.15425 * 3 2 1 5 5 C 1.46491 * 126.01844 * 179.81644 * 4 3 2 6 6 C 1.50702 * 109.46957 * 269.68787 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.35231 * 107.95854 * 359.55237 * 4 3 2 15 15 C 1.50700 * 126.16195 * 180.28334 * 14 4 3 16 16 C 1.35634 * 107.67655 * 0.26335 * 14 4 3 17 17 O 1.36193 * 126.08471 * 180.02562 * 16 14 4 18 18 C 1.34191 * 117.00438 * 89.99732 * 17 16 14 19 19 O 1.21215 * 119.99433 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00119 * 179.97438 * 18 17 16 21 21 C 1.53778 * 113.61563 * 279.13665 * 20 18 17 22 22 C 1.53953 * 87.01799 * 220.04570 * 21 20 18 23 23 C 1.53782 * 113.61253 * 181.52586 * 20 18 17 24 24 H 1.08998 * 109.47232 * 270.33680 * 1 2 3 25 25 H 1.09000 * 109.46998 * 30.33952 * 1 2 3 26 26 H 1.09003 * 109.46923 * 150.33005 * 1 2 3 27 27 H 1.09004 * 109.47166 * 149.69053 * 5 4 3 28 28 H 1.08994 * 109.47507 * 29.68759 * 5 4 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 30 30 H 1.08999 * 109.47062 * 90.00183 * 15 14 4 31 31 H 1.09000 * 109.47194 * 209.99943 * 15 14 4 32 32 H 1.08998 * 109.47556 * 329.99816 * 15 14 4 33 33 H 1.09004 * 112.84486 * 50.33762 * 20 18 17 34 34 H 1.08994 * 113.61617 * 334.56904 * 21 20 18 35 35 H 1.09000 * 113.61219 * 105.46993 * 21 20 18 36 36 H 1.08992 * 113.54275 * 270.81063 * 22 21 20 37 37 H 1.09005 * 113.66202 * 139.93134 * 22 21 20 38 38 H 1.08998 * 113.61423 * 254.52827 * 23 20 18 39 39 H 1.08994 * 113.61410 * 25.35638 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 7 3.6094 0.6371 -0.0036 5 6 4.7885 1.5064 -0.0086 6 6 5.1929 1.7961 -1.4311 7 1 4.6279 1.3752 -2.2496 8 6 6.2806 2.6037 -1.6877 9 7 6.9685 3.1166 -0.6910 10 14 6.7772 2.9691 -3.4510 11 1 6.0740 4.1898 -3.9205 12 1 8.2447 3.1870 -3.5169 13 1 6.4079 1.8210 -4.3174 14 6 3.6183 -0.7152 0.0043 15 6 4.8409 -1.5964 0.0100 16 6 2.3288 -1.1355 0.0067 17 8 1.9073 -2.4306 0.0147 18 6 1.7185 -3.0025 1.2139 19 8 1.9222 -2.3682 2.2266 20 6 1.2521 -4.4328 1.3016 21 6 -0.2648 -4.5989 1.1114 22 6 -0.2092 -5.6506 2.2344 23 6 1.0487 -4.9271 2.7435 24 1 -0.3633 0.0060 1.0276 25 1 -0.3633 0.8869 -0.5191 26 1 -0.3633 -0.8930 -0.5087 27 1 5.6091 1.0086 0.5082 28 1 4.5529 2.4413 0.4997 29 1 7.7339 3.6845 -0.8716 30 1 5.1352 -1.8028 1.0390 31 1 4.6154 -2.5338 -0.4985 32 1 5.6562 -1.0899 -0.5065 33 1 1.8460 -5.1099 0.6876 34 1 -0.8377 -3.7096 1.3740 35 1 -0.5407 -5.0099 0.1403 36 1 -0.0162 -6.6613 1.8750 37 1 -1.0517 -5.5991 2.9241 38 1 1.8316 -5.6027 3.0880 39 1 0.8369 -4.1275 3.4533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121265493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:02 Heat of formation + Delta-G solvation = 3.746279 kcal Electronic energy + Delta-G solvation = -21709.558114 eV Core-core repulsion = 18426.676312 eV Total energy + Delta-G solvation = -3282.881802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25005 -40.07071 -38.21596 -36.13927 -34.01211 -32.58587 -30.84671 -29.07735 -27.81205 -26.10306 -25.96479 -25.83478 -23.03708 -21.90023 -19.82845 -19.28842 -19.17867 -17.68211 -17.03527 -16.66667 -15.90649 -15.39370 -14.93572 -14.63746 -14.39158 -13.93682 -13.34591 -12.97558 -12.85083 -12.79684 -12.70130 -12.55659 -12.38511 -12.06757 -11.86785 -11.71825 -11.58506 -11.41604 -11.05409 -10.93608 -10.81777 -10.80897 -10.69146 -10.34598 -10.17675 -9.79280 -9.70083 -8.69078 -8.35594 -7.68012 -6.30861 -4.39116 2.35345 2.38862 2.76260 3.19443 3.25523 3.27069 3.35429 3.65151 4.22025 4.25871 4.31734 4.52717 4.61871 5.00011 5.05005 5.18421 5.29905 5.38934 5.43046 5.51362 5.60252 5.63222 5.69748 5.76387 5.80089 5.89042 5.94026 6.09145 6.14232 6.15397 6.29200 6.54300 6.68836 6.92113 6.99794 7.28382 7.59433 7.80561 7.83715 8.24481 8.44387 8.67330 9.27616 10.76872 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.003974 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.368413 B = 7044.910754 C = 7305.962655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.057 3.943 3 N -0.281 5.281 4 N -0.313 5.313 5 C 0.257 3.743 6 C -0.540 4.540 7 H 0.066 0.934 8 C 0.067 3.933 9 N -0.890 5.890 10 Si 0.908 3.092 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.104 3.896 15 C -0.093 4.093 16 C -0.105 4.105 17 O -0.252 6.252 18 C 0.448 3.552 19 O -0.496 6.496 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.141 4.141 23 C -0.121 4.121 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.269 0.731 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 -16.589 3.366 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 N -0.105 5.105 4 N -0.094 5.094 5 C 0.140 3.860 6 C -0.579 4.579 7 H 0.084 0.916 8 C -0.137 4.137 9 N -0.527 5.527 10 Si 0.735 3.265 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.030 4.030 15 C -0.151 4.151 16 C -0.159 4.159 17 O -0.164 6.164 18 C 0.290 3.710 19 O -0.381 6.381 20 C -0.127 4.127 21 C -0.160 4.160 22 C -0.178 4.178 23 C -0.159 4.159 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.680 -14.866 3.721 18.679 hybrid contribution 0.531 -0.391 -0.881 1.100 sum -10.149 -15.257 2.841 18.543 Atomic orbital electron populations 1.20054 0.87317 1.02850 1.02238 1.22250 0.96805 0.89961 1.01804 1.77366 0.87354 1.21662 1.24129 1.49161 1.06059 1.03687 1.50456 1.19795 0.77521 0.89421 0.99259 1.21301 1.13575 1.31888 0.91112 0.91603 1.24939 0.95609 0.94865 0.98312 1.69924 1.19182 1.32429 1.31203 0.86318 0.77645 0.79031 0.83492 1.20239 1.20825 1.19589 1.20883 0.95857 0.86429 0.99826 1.20429 0.94052 0.97759 1.02838 1.17626 0.90603 0.82218 1.25422 1.84690 1.76329 1.23969 1.31384 1.24336 0.74184 0.89833 0.82611 1.90747 1.46283 1.64375 1.36740 1.22543 0.98911 0.90300 1.00991 1.22878 0.92872 1.00020 1.00194 1.22861 0.98486 0.98293 0.98200 1.22918 0.98175 1.00280 0.94495 0.91279 0.90839 0.91033 0.92723 0.92506 0.92139 0.90795 0.90468 0.89209 0.85897 0.89463 0.90034 0.89656 0.90719 0.90590 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.44 36.01 0.38 -0.65 16 2 C 0.06 1.20 7.23 -82.28 -0.59 0.60 16 3 N -0.28 -6.73 12.57 33.73 0.42 -6.30 16 4 N -0.31 -7.63 3.60 -58.17 -0.21 -7.84 16 5 C 0.26 6.68 5.83 -5.20 -0.03 6.65 16 6 C -0.54 -14.87 9.39 -34.44 -0.32 -15.20 16 7 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 10 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 C 0.10 2.25 6.95 -82.03 -0.57 1.68 16 15 C -0.09 -1.65 9.87 36.01 0.36 -1.29 16 16 C -0.11 -2.16 5.34 -39.79 -0.21 -2.38 16 17 O -0.25 -4.39 10.13 -24.26 -0.25 -4.64 16 18 C 0.45 6.98 7.43 36.00 0.27 7.24 16 19 O -0.50 -9.44 15.67 -19.06 -0.30 -9.74 16 20 C -0.11 -1.13 4.25 -90.96 -0.39 -1.51 16 21 C -0.12 -1.02 7.64 -25.83 -0.20 -1.22 16 22 C -0.14 -0.97 8.09 -25.83 -0.21 -1.18 16 23 C -0.12 -1.11 7.40 -25.92 -0.19 -1.31 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 1.40 7.67 -51.93 -0.40 1.01 16 28 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.66 7.73 -51.93 -0.40 1.26 16 33 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.05 7.45 -51.93 -0.39 0.66 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -32.17 338.06 -7.14 -39.30 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.80 Total: -0.75 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.81 Total: -6.85 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.95 Total: -38.39 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.54 Total: -14.38 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.17 -7.14 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121265493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.051 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds