Wall clock time and date at job start Tue Mar 31 2020 00:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50702 * 120.00350 * 2 1 4 4 C 1.33082 * 120.00039 * 180.02562 * 2 1 3 5 5 C 1.46953 * 119.99792 * 5.63621 * 4 2 1 6 6 O 1.21558 * 119.99670 * 354.68663 * 5 4 2 7 7 O 1.34745 * 119.99944 * 174.69511 * 5 4 2 8 8 C 1.36183 * 117.00104 * 179.97438 * 7 5 4 9 9 C 1.40182 * 126.08197 * 89.96818 * 8 7 5 10 10 C 1.50698 * 125.88610 * 0.02562 * 9 8 7 11 11 N 1.30861 * 108.22341 * 179.97438 * 9 8 7 12 12 N 1.40064 * 108.30364 * 0.02562 * 11 9 8 13 13 C 1.46505 * 126.01235 * 179.97438 * 12 11 9 14 14 C 1.50708 * 109.46689 * 90.02611 * 13 12 11 15 15 H 1.07998 * 120.00212 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99715 * 179.71945 * 14 13 12 17 17 N 1.31511 * 119.99782 * 0.28051 * 16 14 13 18 18 Si 1.86798 * 119.99821 * 180.27448 * 16 14 13 19 19 H 1.48505 * 109.47114 * 90.00507 * 18 16 14 20 20 H 1.48498 * 109.46946 * 210.00284 * 18 16 14 21 21 H 1.48500 * 109.47379 * 330.00589 * 18 16 14 22 22 C 1.35247 * 107.96919 * 0.26068 * 12 11 9 23 23 C 1.50698 * 126.16588 * 179.73686 * 22 12 11 24 24 H 1.08999 * 109.47003 * 238.12700 * 1 2 3 25 25 H 1.09010 * 109.46955 * 358.11840 * 1 2 3 26 26 H 1.08997 * 109.47271 * 118.12000 * 1 2 3 27 27 H 1.09000 * 109.47352 * 270.00593 * 3 2 1 28 28 H 1.09000 * 109.46703 * 30.00263 * 3 2 1 29 29 H 1.08996 * 109.47358 * 150.00263 * 3 2 1 30 30 H 1.08000 * 120.00305 * 185.63009 * 4 2 1 31 31 H 1.08994 * 109.47390 * 269.99671 * 10 9 8 32 32 H 1.09000 * 109.47568 * 30.00093 * 10 9 8 33 33 H 1.09003 * 109.47070 * 149.99580 * 10 9 8 34 34 H 1.08992 * 109.47471 * 330.02685 * 13 12 11 35 35 H 1.09002 * 109.47109 * 210.02277 * 13 12 11 36 36 H 0.97004 * 119.99579 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47176 * 89.99864 * 23 22 12 38 38 H 1.08998 * 109.47109 * 209.99765 * 23 22 12 39 39 H 1.09002 * 109.46848 * 330.00106 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1724 -1.1525 -0.0005 5 6 1.4429 -2.4220 -0.1261 6 8 0.2274 -2.4264 -0.1322 7 8 2.1215 -3.5811 -0.2342 8 6 1.3846 -4.7208 -0.3468 9 6 0.9423 -5.3032 -1.5427 10 6 1.2009 -4.7759 -2.9306 11 7 0.2672 -6.3843 -1.2463 12 7 0.2555 -6.5274 0.1470 13 6 -0.3928 -7.6063 0.8967 14 6 0.5801 -8.7417 1.0856 15 1 1.5812 -8.6669 0.6875 16 6 0.1940 -9.8733 1.7723 17 7 -1.0249 -9.9641 2.2575 18 14 1.4023 -11.2774 2.0131 19 1 2.1565 -11.0704 3.2755 20 1 0.6605 -12.5619 2.0845 21 1 2.3503 -11.3161 0.8707 22 6 0.9427 -5.4909 0.6787 23 6 1.1788 -5.2394 2.1456 24 1 -0.3633 -0.5426 0.8727 25 1 -0.3633 1.0272 0.0337 26 1 -0.3633 -0.4843 -0.9063 27 1 2.4422 1.6198 -1.0276 28 1 1.6715 2.0647 0.5139 29 1 3.2130 1.1747 0.5138 30 1 3.2485 -1.1549 0.0912 31 1 0.3993 -4.0946 -3.2156 32 1 2.1522 -4.2441 -2.9459 33 1 1.2382 -5.6076 -3.6341 34 1 -1.2625 -7.9612 0.3440 35 1 -0.7089 -7.2328 1.8708 36 1 -1.2966 -10.7604 2.7403 37 1 2.1018 -5.7300 2.4545 38 1 1.2608 -4.1669 2.3218 39 1 0.3443 -5.6395 2.7217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123463977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:10 Heat of formation + Delta-G solvation = -1.314716 kcal Electronic energy + Delta-G solvation = -21531.119986 eV Core-core repulsion = 18248.018723 eV Total energy + Delta-G solvation = -3283.101263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.13154 -39.71967 -37.04074 -35.24112 -33.99007 -32.57241 -30.84142 -29.05371 -28.69877 -27.97311 -26.28776 -25.94899 -23.23095 -22.12682 -19.59871 -19.15319 -18.73293 -17.49853 -16.81197 -16.28834 -15.59756 -15.10121 -14.64335 -14.37402 -14.31569 -14.02496 -13.57172 -13.22826 -12.95353 -12.80587 -12.62632 -12.55042 -12.46394 -12.03562 -11.98725 -11.91107 -11.79370 -11.67121 -11.52835 -11.03425 -10.90575 -10.77982 -10.31858 -10.03157 -9.76806 -9.68880 -9.33101 -8.67679 -8.33717 -7.65515 -6.29490 -4.37396 1.10920 2.42880 2.80737 3.07686 3.19721 3.26233 3.28943 3.37874 3.72169 4.27161 4.57179 4.70006 5.02498 5.06944 5.12635 5.18942 5.23829 5.38120 5.47546 5.54595 5.61882 5.68574 5.76877 5.92025 5.94817 5.97374 6.10058 6.17246 6.24704 6.29378 6.31962 6.52122 6.74569 6.95177 7.02451 7.32117 7.61038 7.82120 7.85736 8.30226 8.46761 8.68813 9.29126 10.78318 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030234 B = 0.003918 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.876746 B = 7145.638911 C = 7414.042244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.030 4.030 3 C -0.125 4.125 4 C -0.206 4.206 5 C 0.470 3.530 6 O -0.496 6.496 7 O -0.252 6.252 8 C -0.101 4.101 9 C 0.057 3.943 10 C -0.066 4.066 11 N -0.281 5.281 12 N -0.314 5.314 13 C 0.257 3.743 14 C -0.539 4.539 15 H 0.066 0.934 16 C 0.066 3.934 17 N -0.891 5.891 18 Si 0.908 3.092 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.271 1.271 22 C 0.103 3.897 23 C -0.084 4.084 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.137 0.863 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.269 0.731 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.350 19.372 -2.970 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.031 4.031 3 C -0.181 4.181 4 C -0.225 4.225 5 C 0.317 3.683 6 O -0.385 6.385 7 O -0.164 6.164 8 C -0.155 4.155 9 C -0.108 4.108 10 C -0.124 4.124 11 N -0.105 5.105 12 N -0.094 5.094 13 C 0.140 3.860 14 C -0.577 4.577 15 H 0.084 0.916 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.735 3.265 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.196 1.196 22 C -0.031 4.031 23 C -0.142 4.142 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.110 18.103 -3.249 19.089 hybrid contribution 0.966 -0.310 0.568 1.163 sum 6.076 17.794 -2.681 18.992 Atomic orbital electron populations 1.21140 0.90675 1.01478 1.04613 1.22671 0.97013 0.94409 0.89009 1.21017 1.00163 0.93834 1.03132 1.21714 1.00638 0.88909 1.11269 1.22148 0.86723 0.85608 0.73799 1.90834 1.15045 1.87467 1.45135 1.84780 1.36794 1.12337 1.82500 1.17599 1.14453 0.91581 0.91864 1.22262 0.98004 0.94665 0.95875 1.20047 1.01696 1.00660 0.90024 1.77365 1.22285 1.18506 0.92360 1.49149 1.37558 1.19210 1.03504 1.19792 0.93799 0.81956 0.90410 1.21295 0.99029 1.00649 1.36767 0.91616 1.24933 0.95674 0.98363 0.94760 1.69921 1.17411 1.29362 1.36121 0.86321 0.80640 0.80771 0.78784 1.20261 1.20813 1.19593 1.20890 0.95506 0.90634 0.96043 1.20336 1.03598 1.01702 0.88545 0.89735 0.92574 0.89686 0.89979 0.90835 0.90826 0.84502 0.91277 0.91028 0.90887 0.92531 0.92750 0.92160 0.89780 0.91287 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 8.34 36.01 0.30 -1.00 16 2 C -0.03 -0.29 6.11 -101.14 -0.62 -0.91 16 3 C -0.13 -0.75 9.99 36.01 0.36 -0.39 16 4 C -0.21 -2.38 9.75 -37.85 -0.37 -2.75 16 5 C 0.47 7.58 7.82 34.26 0.27 7.84 16 6 O -0.50 -9.20 12.88 -19.31 -0.25 -9.45 16 7 O -0.25 -4.54 10.14 -25.70 -0.26 -4.80 16 8 C -0.10 -2.11 5.36 -39.78 -0.21 -2.32 16 9 C 0.06 1.21 7.23 -82.28 -0.59 0.61 16 10 C -0.07 -1.04 10.44 36.00 0.38 -0.67 16 11 N -0.28 -6.76 12.57 33.74 0.42 -6.33 16 12 N -0.31 -7.66 3.60 -58.16 -0.21 -7.87 16 13 C 0.26 6.71 6.01 -5.19 -0.03 6.68 16 14 C -0.54 -14.92 9.39 -34.43 -0.32 -15.24 16 15 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 18 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.10 2.24 6.95 -82.02 -0.57 1.67 16 23 C -0.08 -1.51 10.09 36.00 0.36 -1.14 16 24 H 0.08 1.04 7.31 -51.93 -0.38 0.66 16 25 H 0.06 0.45 7.93 -51.92 -0.41 0.03 16 26 H 0.08 1.05 7.15 -51.93 -0.37 0.68 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.36 8.03 -51.93 -0.42 -0.05 16 29 H 0.07 0.37 8.06 -51.93 -0.42 -0.04 16 30 H 0.14 1.26 8.04 -52.49 -0.42 0.84 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.57 8.14 -51.93 -0.42 1.14 16 35 H 0.05 1.40 7.05 -51.93 -0.37 1.03 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.41 7.09 -51.93 -0.37 1.04 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -32.03 340.03 -6.26 -38.30 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.66 Total: -0.79 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.15 Total: -5.90 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.95 Total: -38.56 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.51 Total: -14.25 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.03 -6.26 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.981 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds