Wall clock time and date at job start Tue Mar 31 2020 00:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50702 * 120.00350 * 2 1 4 4 C 1.33082 * 120.00039 * 180.02562 * 2 1 3 5 5 C 1.46953 * 119.99792 * 5.63621 * 4 2 1 6 6 O 1.21558 * 119.99670 * 354.68663 * 5 4 2 7 7 O 1.34745 * 119.99944 * 174.69511 * 5 4 2 8 8 C 1.36183 * 117.00104 * 179.97438 * 7 5 4 9 9 C 1.40182 * 126.08197 * 89.96818 * 8 7 5 10 10 C 1.50698 * 125.88610 * 0.02562 * 9 8 7 11 11 N 1.30861 * 108.22341 * 179.97438 * 9 8 7 12 12 N 1.40064 * 108.30364 * 0.02562 * 11 9 8 13 13 C 1.46505 * 126.01235 * 179.97438 * 12 11 9 14 14 C 1.50708 * 109.46689 * 90.02611 * 13 12 11 15 15 H 1.07998 * 120.00212 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99715 * 179.71945 * 14 13 12 17 17 N 1.31511 * 119.99782 * 0.28051 * 16 14 13 18 18 Si 1.86798 * 119.99821 * 180.27448 * 16 14 13 19 19 H 1.48505 * 109.47114 * 90.00507 * 18 16 14 20 20 H 1.48498 * 109.46946 * 210.00284 * 18 16 14 21 21 H 1.48500 * 109.47379 * 330.00589 * 18 16 14 22 22 C 1.35247 * 107.96919 * 0.26068 * 12 11 9 23 23 C 1.50698 * 126.16588 * 179.73686 * 22 12 11 24 24 H 1.08999 * 109.47003 * 238.12700 * 1 2 3 25 25 H 1.09010 * 109.46955 * 358.11840 * 1 2 3 26 26 H 1.08997 * 109.47271 * 118.12000 * 1 2 3 27 27 H 1.09000 * 109.47352 * 270.00593 * 3 2 1 28 28 H 1.09000 * 109.46703 * 30.00263 * 3 2 1 29 29 H 1.08996 * 109.47358 * 150.00263 * 3 2 1 30 30 H 1.08000 * 120.00305 * 185.63009 * 4 2 1 31 31 H 1.08994 * 109.47390 * 269.99671 * 10 9 8 32 32 H 1.09000 * 109.47568 * 30.00093 * 10 9 8 33 33 H 1.09003 * 109.47070 * 149.99580 * 10 9 8 34 34 H 1.08992 * 109.47471 * 330.02685 * 13 12 11 35 35 H 1.09002 * 109.47109 * 210.02277 * 13 12 11 36 36 H 0.97004 * 119.99579 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47176 * 89.99864 * 23 22 12 38 38 H 1.08998 * 109.47109 * 209.99765 * 23 22 12 39 39 H 1.09002 * 109.46848 * 330.00106 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1724 -1.1525 -0.0005 5 6 1.4429 -2.4220 -0.1261 6 8 0.2274 -2.4264 -0.1322 7 8 2.1215 -3.5811 -0.2342 8 6 1.3846 -4.7208 -0.3468 9 6 0.9423 -5.3032 -1.5427 10 6 1.2009 -4.7759 -2.9306 11 7 0.2672 -6.3843 -1.2463 12 7 0.2555 -6.5274 0.1470 13 6 -0.3928 -7.6063 0.8967 14 6 0.5801 -8.7417 1.0856 15 1 1.5812 -8.6669 0.6875 16 6 0.1940 -9.8733 1.7723 17 7 -1.0249 -9.9641 2.2575 18 14 1.4023 -11.2774 2.0131 19 1 2.1565 -11.0704 3.2755 20 1 0.6605 -12.5619 2.0845 21 1 2.3503 -11.3161 0.8707 22 6 0.9427 -5.4909 0.6787 23 6 1.1788 -5.2394 2.1456 24 1 -0.3633 -0.5426 0.8727 25 1 -0.3633 1.0272 0.0337 26 1 -0.3633 -0.4843 -0.9063 27 1 2.4422 1.6198 -1.0276 28 1 1.6715 2.0647 0.5139 29 1 3.2130 1.1747 0.5138 30 1 3.2485 -1.1549 0.0912 31 1 0.3993 -4.0946 -3.2156 32 1 2.1522 -4.2441 -2.9459 33 1 1.2382 -5.6076 -3.6341 34 1 -1.2625 -7.9612 0.3440 35 1 -0.7089 -7.2328 1.8708 36 1 -1.2966 -10.7604 2.7403 37 1 2.1018 -5.7300 2.4545 38 1 1.2608 -4.1669 2.3218 39 1 0.3443 -5.6395 2.7217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123463977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:09 Heat of formation + Delta-G solvation = -19.573985 kcal Electronic energy + Delta-G solvation = -21531.911767 eV Core-core repulsion = 18248.018723 eV Total energy + Delta-G solvation = -3283.893044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.70186 -41.14413 -38.28066 -36.24934 -35.90561 -34.40037 -32.51703 -30.72194 -29.66114 -28.67371 -27.79387 -27.77537 -24.95382 -23.58884 -21.10538 -20.81591 -19.75484 -18.93107 -18.83517 -17.69265 -17.08311 -16.64837 -16.30300 -15.96626 -15.23932 -15.01193 -14.88552 -14.63520 -14.49653 -14.20478 -14.18082 -13.69026 -13.45485 -13.42563 -13.32270 -13.29451 -13.08433 -12.90108 -12.75911 -12.69631 -12.47812 -12.40834 -12.28509 -11.79539 -11.33563 -11.18530 -10.77318 -10.17736 -10.09917 -9.34722 -8.38480 -6.56345 0.15868 0.78995 1.23936 1.36651 1.37909 1.48951 1.63254 1.94312 2.31005 2.34651 2.92514 3.54827 3.64556 3.85634 3.90439 4.03374 4.27121 4.35405 4.49741 4.50016 4.59096 4.66950 4.67146 4.74260 4.77891 4.80741 4.83722 4.90717 4.96715 5.06282 5.15629 5.19021 5.34834 5.44389 5.47700 5.63432 5.72444 5.82616 6.04866 6.52746 6.75587 6.96475 7.14891 8.69043 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030234 B = 0.003918 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.876746 B = 7145.638911 C = 7414.042244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.004 4.004 3 C -0.123 4.123 4 C -0.228 4.228 5 C 0.467 3.533 6 O -0.530 6.530 7 O -0.253 6.253 8 C -0.101 4.101 9 C 0.056 3.944 10 C -0.063 4.063 11 N -0.324 5.324 12 N -0.340 5.340 13 C 0.274 3.726 14 C -0.557 4.557 15 H 0.052 0.948 16 C 0.023 3.977 17 N -0.918 5.918 18 Si 0.976 3.024 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.274 1.274 22 C 0.087 3.913 23 C -0.079 4.079 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.164 0.836 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.027 0.973 35 H 0.050 0.950 36 H 0.275 0.725 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.404 21.466 -2.926 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.004 4.004 3 C -0.179 4.179 4 C -0.246 4.246 5 C 0.316 3.684 6 O -0.421 6.421 7 O -0.165 6.165 8 C -0.155 4.155 9 C -0.110 4.110 10 C -0.121 4.121 11 N -0.148 5.148 12 N -0.121 5.121 13 C 0.156 3.844 14 C -0.595 4.595 15 H 0.071 0.929 16 C -0.178 4.178 17 N -0.556 5.556 18 Si 0.799 3.201 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.199 1.199 22 C -0.045 4.045 23 C -0.137 4.137 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.181 0.819 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.174 20.228 -3.202 21.700 hybrid contribution 0.286 -0.754 0.507 0.953 sum 7.460 19.474 -2.695 21.028 Atomic orbital electron populations 1.21147 0.91811 1.02794 1.02623 1.23071 0.96496 0.95637 0.85244 1.21142 1.00532 0.91604 1.04628 1.21814 1.01696 0.86818 1.14294 1.22981 0.86706 0.85955 0.72728 1.90834 1.16540 1.87639 1.47053 1.84775 1.36695 1.12153 1.82839 1.17681 1.13705 0.92611 0.91532 1.23094 0.96221 0.93481 0.98176 1.20229 1.03254 1.01336 0.87300 1.77283 1.24503 1.20578 0.92485 1.48925 1.39360 1.19906 1.03873 1.19337 0.92805 0.82413 0.89856 1.21405 0.98719 1.01860 1.37492 0.92932 1.25786 0.97429 1.00628 0.93996 1.70009 1.18936 1.30327 1.36314 0.85285 0.78299 0.77553 0.78946 1.18744 1.19837 1.19884 1.21532 0.95040 0.89989 0.97972 1.20421 1.03820 1.03151 0.86334 0.91840 0.89530 0.91710 0.88189 0.89235 0.89264 0.81862 0.90021 0.88754 0.89793 0.95479 0.93200 0.91594 0.88648 0.89180 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.34 71.24 0.59 -1.92 16 2 C 0.00 -0.06 6.11 -17.60 -0.11 -0.17 16 3 C -0.12 -0.92 9.99 71.24 0.71 -0.20 16 4 C -0.23 -4.71 9.75 23.40 0.23 -4.48 16 5 C 0.47 14.68 7.82 70.10 0.55 15.23 16 6 O -0.53 -19.84 12.88 19.65 0.25 -19.59 16 7 O -0.25 -8.90 10.14 -3.21 -0.03 -8.94 16 8 C -0.10 -4.26 5.36 22.14 0.12 -4.14 16 9 C 0.06 2.39 7.23 43.18 0.31 2.70 16 10 C -0.06 -1.94 10.44 71.24 0.74 -1.19 16 11 N -0.32 -16.20 12.57 -47.18 -0.59 -16.79 16 12 N -0.34 -17.34 3.60 -337.90 -1.22 -18.56 16 13 C 0.27 15.06 6.01 85.63 0.51 15.57 16 14 C -0.56 -31.81 9.39 25.60 0.24 -31.57 16 15 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 16 C 0.02 1.26 5.46 84.66 0.46 1.73 16 17 N -0.92 -52.55 13.29 21.45 0.28 -52.26 16 18 Si 0.98 43.33 29.54 68.60 2.03 45.36 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 C 0.09 3.88 6.95 41.43 0.29 4.17 16 23 C -0.08 -2.88 10.09 71.24 0.72 -2.16 16 24 H 0.06 1.55 7.31 -2.39 -0.02 1.53 16 25 H 0.09 1.14 7.93 -2.38 -0.02 1.13 16 26 H 0.06 1.57 7.15 -2.39 -0.02 1.56 16 27 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.09 0.45 8.03 -2.39 -0.02 0.44 16 29 H 0.09 0.47 8.06 -2.39 -0.02 0.45 16 30 H 0.16 2.46 8.04 -2.91 -0.02 2.44 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 2.72 7.05 -2.39 -0.02 2.70 16 36 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.07 2.71 7.09 -2.39 -0.02 2.69 16 Total: -1.00 -72.08 340.03 7.14 -64.94 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.04 Total: 12.28 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 5.37 Total: -6.44 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -1.53 Total: -87.62 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: 0.22 Total: -28.52 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -72.08 7.14 -64.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123463977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.368 kcal (2) G-P(sol) polarization free energy of solvation -72.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds