Wall clock time and date at job start Mon Mar 30 2020 23:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35652 * 116.99811 * 2 1 4 4 C 1.38706 * 120.15473 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08366 * 180.25684 * 4 3 2 6 6 C 1.38547 * 120.39089 * 359.43991 * 5 4 3 7 7 C 1.50702 * 119.84777 * 180.28289 * 6 5 4 8 8 C 1.37792 * 120.29891 * 0.56262 * 6 5 4 9 9 C 1.39701 * 119.90795 * 359.72047 * 8 6 5 10 10 C 1.47531 * 120.19009 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00151 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00255 * 0.02562 * 10 9 8 13 13 C 1.46503 * 120.00376 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47302 * 180.02562 * 13 12 10 15 15 N 1.46498 * 109.46964 * 180.02562 * 14 13 12 16 16 C 1.36933 * 119.99875 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99986 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00204 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00481 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00023 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47088 * 90.00265 * 20 18 16 22 22 H 1.48498 * 109.47403 * 210.00452 * 20 18 16 23 23 H 1.48500 * 109.47053 * 330.00610 * 20 18 16 24 24 H 1.09003 * 109.47422 * 300.00335 * 1 2 3 25 25 H 1.09007 * 109.47148 * 60.00057 * 1 2 3 26 26 H 1.09001 * 109.47478 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.95345 * 359.97274 * 4 3 2 28 28 H 1.08001 * 119.80285 * 179.70084 * 5 4 3 29 29 H 1.08997 * 109.46980 * 270.27054 * 7 6 5 30 30 H 1.08999 * 109.47320 * 30.27924 * 7 6 5 31 31 H 1.09003 * 109.46944 * 150.27700 * 7 6 5 32 32 H 1.07997 * 120.04449 * 179.74991 * 8 6 5 33 33 H 0.97003 * 120.00006 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47277 * 300.00614 * 13 12 10 35 35 H 1.08999 * 109.46842 * 60.00317 * 13 12 10 36 36 H 1.08995 * 109.46951 * 300.00602 * 14 13 12 37 37 H 1.08999 * 109.46916 * 60.00358 * 14 13 12 38 38 H 0.96998 * 120.00473 * 359.97438 * 15 14 13 39 39 H 0.96997 * 120.00365 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 0.0005 5 6 1.9207 3.6033 -0.0048 6 6 3.3038 3.6836 0.0009 7 6 3.9768 5.0320 0.0014 8 6 4.0668 2.5362 0.0004 9 6 3.4441 1.2857 -0.0001 10 6 4.2550 0.0532 -0.0013 11 8 3.7094 -1.0336 -0.0022 12 7 5.6004 0.1316 -0.0014 13 6 6.4057 -1.0923 -0.0020 14 6 7.8911 -0.7255 -0.0013 15 7 8.6962 -1.9494 -0.0025 16 6 10.0632 -1.8696 -0.0017 17 1 10.5478 -0.9044 -0.0005 18 6 10.8262 -3.0292 -0.0033 19 7 12.1402 -2.9526 -0.0030 20 14 9.9881 -4.6987 -0.0060 21 1 9.7662 -5.1389 -1.4069 22 1 10.8494 -5.6861 0.6927 23 1 8.6822 -4.5981 0.6938 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2138 2.3195 0.0005 28 1 1.3304 4.5077 -0.0093 29 1 4.1391 5.3574 -1.0261 30 1 3.3428 5.7544 0.5156 31 1 4.9354 4.9594 0.5152 32 1 5.1447 2.6036 0.0008 33 1 6.0357 0.9985 -0.0003 34 1 6.1761 -1.6786 0.8877 35 1 6.1760 -1.6778 -0.8922 36 1 8.1208 -0.1389 -0.8907 37 1 8.1204 -0.1402 0.8892 38 1 8.2610 -2.8163 -0.0032 39 1 12.6733 -3.7629 -0.0046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130981741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:49 Heat of formation + Delta-G solvation = -33.891927 kcal Electronic energy + Delta-G solvation = -20764.680493 eV Core-core repulsion = 17480.166577 eV Total energy + Delta-G solvation = -3284.513917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.77030 -38.97192 -37.87767 -35.76425 -33.90351 -32.42357 -31.83473 -31.13573 -28.35845 -27.82693 -26.23188 -24.42197 -23.10775 -21.71841 -21.32910 -20.19613 -18.60352 -17.71547 -16.99834 -16.61705 -16.04557 -15.41976 -15.23893 -14.97096 -14.64559 -14.35311 -14.07060 -14.02322 -13.70523 -13.63488 -13.40990 -12.61453 -12.54309 -12.43700 -12.30980 -11.87156 -11.52498 -11.49637 -11.40386 -11.13520 -10.90618 -10.82774 -10.13985 -9.73626 -9.60011 -9.36927 -8.97850 -8.82454 -8.33076 -7.28358 -5.78508 -3.15691 0.63359 1.07315 2.83622 3.02830 3.23479 3.40488 3.44584 3.47899 3.66877 4.38525 4.42342 4.56743 4.59530 4.71972 4.88262 4.92862 4.98172 5.12975 5.23199 5.25938 5.33671 5.38243 5.47428 5.56492 5.61410 5.65772 5.70520 5.82615 5.91469 6.02679 6.20685 6.39005 6.44985 6.62621 6.68614 7.12504 7.64049 7.95285 8.37553 8.39905 9.17635 9.90016 10.08631 11.39402 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024648 B = 0.003362 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.729790 B = 8326.728442 C = 9431.406029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.280 6.280 3 C 0.178 3.822 4 C -0.218 4.218 5 C -0.055 4.055 6 C -0.134 4.134 7 C -0.110 4.110 8 C -0.048 4.048 9 C -0.164 4.164 10 C 0.556 3.444 11 O -0.521 6.521 12 N -0.722 5.722 13 C 0.109 3.891 14 C 0.148 3.852 15 N -0.753 5.753 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.933 5.933 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.275 1.275 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.398 0.602 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.363 0.637 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.113 16.225 -0.010 29.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.190 6.190 3 C 0.130 3.870 4 C -0.236 4.236 5 C -0.074 4.074 6 C -0.135 4.135 7 C -0.167 4.167 8 C -0.066 4.066 9 C -0.168 4.168 10 C 0.343 3.657 11 O -0.398 6.398 12 N -0.375 5.375 13 C -0.014 4.014 14 C 0.021 3.979 15 N -0.399 5.399 16 C -0.378 4.378 17 H 0.109 0.891 18 C -0.189 4.189 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.201 1.201 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.196 0.804 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.172 15.291 -0.008 29.453 hybrid contribution -0.512 -0.655 0.002 0.831 sum -25.684 14.636 -0.007 29.561 Atomic orbital electron populations 1.23158 0.78868 1.04334 1.01034 1.86400 1.20625 1.25376 1.86632 1.19053 0.90994 0.84909 0.92044 1.21215 1.00259 0.91979 1.10187 1.20986 0.93979 0.97084 0.95334 1.19745 0.93567 0.95617 1.04527 1.20737 1.00580 0.92890 1.02451 1.21106 0.99909 0.90292 0.95316 1.19391 0.90866 0.94080 1.12414 1.17944 0.81962 0.88594 0.77200 1.90825 1.71602 1.28651 1.48704 1.45790 1.05768 1.10245 1.75679 1.21582 0.91119 0.86231 1.02495 1.20733 0.87217 0.90734 0.99258 1.42534 1.03846 1.02182 1.91329 1.19013 0.80072 0.95046 1.43628 0.89085 1.24667 0.95176 0.97405 1.01690 1.69700 1.03357 1.27743 1.57217 0.86544 0.78846 0.85224 0.77950 1.20909 1.21601 1.20126 0.92666 0.92675 0.87971 0.84836 0.85403 0.91185 0.91599 0.91259 0.84753 0.76726 0.91319 0.91299 0.94889 0.94943 0.80363 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.28 -3.74 8.57 -40.53 -0.35 -4.09 16 3 C 0.18 2.20 6.70 -38.69 -0.26 1.94 16 4 C -0.22 -1.96 9.03 -39.48 -0.36 -2.32 16 5 C -0.06 -0.44 9.68 -39.53 -0.38 -0.82 16 6 C -0.13 -1.12 5.87 -104.67 -0.61 -1.74 16 7 C -0.11 -0.65 10.00 36.01 0.36 -0.29 16 8 C -0.05 -0.47 9.18 -39.20 -0.36 -0.83 16 9 C -0.16 -2.12 5.89 -104.85 -0.62 -2.74 16 10 C 0.56 8.86 7.76 -12.47 -0.10 8.76 16 11 O -0.52 -10.28 15.16 -16.60 -0.25 -10.53 16 12 N -0.72 -10.35 5.51 -61.35 -0.34 -10.69 16 13 C 0.11 1.86 5.79 -4.04 -0.02 1.84 16 14 C 0.15 2.83 6.37 -4.04 -0.03 2.81 16 15 N -0.75 -18.23 5.41 -59.91 -0.32 -18.55 16 16 C -0.25 -7.09 10.47 -15.06 -0.16 -7.25 16 17 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 18 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 19 N -0.93 -29.46 13.97 55.49 0.78 -28.68 16 20 Si 0.88 22.47 27.74 -169.99 -4.71 17.76 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 24 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 25 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 28 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.13 1.05 6.40 -52.49 -0.34 0.72 16 33 H 0.40 4.48 6.50 -40.82 -0.27 4.22 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.36 8.68 5.53 -40.82 -0.23 8.45 16 39 H 0.26 7.81 8.31 -40.82 -0.34 7.48 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -36.05 328.64 -7.23 -43.28 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.34 Total: 5.91 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -1.64 Total: 0.64 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.11 Total: -57.93 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.60 Total: -14.62 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.05 -7.23 -43.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130981741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.392 kcal (2) G-P(sol) polarization free energy of solvation -36.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds