Wall clock time and date at job start Mon Mar 30 2020 23:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35652 * 116.99811 * 2 1 4 4 C 1.38706 * 120.15473 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08366 * 180.25684 * 4 3 2 6 6 C 1.38547 * 120.39089 * 359.43991 * 5 4 3 7 7 C 1.50702 * 119.84777 * 180.28289 * 6 5 4 8 8 C 1.37792 * 120.29891 * 0.56262 * 6 5 4 9 9 C 1.39701 * 119.90795 * 359.72047 * 8 6 5 10 10 C 1.47531 * 120.19009 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00151 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00255 * 0.02562 * 10 9 8 13 13 C 1.46503 * 120.00376 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47302 * 180.02562 * 13 12 10 15 15 N 1.46498 * 109.46964 * 180.02562 * 14 13 12 16 16 C 1.36933 * 119.99875 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99986 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00204 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00481 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00023 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47088 * 90.00265 * 20 18 16 22 22 H 1.48498 * 109.47403 * 210.00452 * 20 18 16 23 23 H 1.48500 * 109.47053 * 330.00610 * 20 18 16 24 24 H 1.09003 * 109.47422 * 300.00335 * 1 2 3 25 25 H 1.09007 * 109.47148 * 60.00057 * 1 2 3 26 26 H 1.09001 * 109.47478 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.95345 * 359.97274 * 4 3 2 28 28 H 1.08001 * 119.80285 * 179.70084 * 5 4 3 29 29 H 1.08997 * 109.46980 * 270.27054 * 7 6 5 30 30 H 1.08999 * 109.47320 * 30.27924 * 7 6 5 31 31 H 1.09003 * 109.46944 * 150.27700 * 7 6 5 32 32 H 1.07997 * 120.04449 * 179.74991 * 8 6 5 33 33 H 0.97003 * 120.00006 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47277 * 300.00614 * 13 12 10 35 35 H 1.08999 * 109.46842 * 60.00317 * 13 12 10 36 36 H 1.08995 * 109.46951 * 300.00602 * 14 13 12 37 37 H 1.08999 * 109.46916 * 60.00358 * 14 13 12 38 38 H 0.96998 * 120.00473 * 359.97438 * 15 14 13 39 39 H 0.96997 * 120.00365 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 0.0005 5 6 1.9207 3.6033 -0.0048 6 6 3.3038 3.6836 0.0009 7 6 3.9768 5.0320 0.0014 8 6 4.0668 2.5362 0.0004 9 6 3.4441 1.2857 -0.0001 10 6 4.2550 0.0532 -0.0013 11 8 3.7094 -1.0336 -0.0022 12 7 5.6004 0.1316 -0.0014 13 6 6.4057 -1.0923 -0.0020 14 6 7.8911 -0.7255 -0.0013 15 7 8.6962 -1.9494 -0.0025 16 6 10.0632 -1.8696 -0.0017 17 1 10.5478 -0.9044 -0.0005 18 6 10.8262 -3.0292 -0.0033 19 7 12.1402 -2.9526 -0.0030 20 14 9.9881 -4.6987 -0.0060 21 1 9.7662 -5.1389 -1.4069 22 1 10.8494 -5.6861 0.6927 23 1 8.6822 -4.5981 0.6938 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2138 2.3195 0.0005 28 1 1.3304 4.5077 -0.0093 29 1 4.1391 5.3574 -1.0261 30 1 3.3428 5.7544 0.5156 31 1 4.9354 4.9594 0.5152 32 1 5.1447 2.6036 0.0008 33 1 6.0357 0.9985 -0.0003 34 1 6.1761 -1.6786 0.8877 35 1 6.1760 -1.6778 -0.8922 36 1 8.1208 -0.1389 -0.8907 37 1 8.1204 -0.1402 0.8892 38 1 8.2610 -2.8163 -0.0032 39 1 12.6733 -3.7629 -0.0046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130981741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:49 Heat of formation + Delta-G solvation = -59.287095 kcal Electronic energy + Delta-G solvation = -20765.781711 eV Core-core repulsion = 17480.166577 eV Total energy + Delta-G solvation = -3285.615134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63945 -40.08130 -38.62326 -37.43366 -35.53915 -33.61110 -33.02474 -32.32702 -29.77235 -28.64432 -26.82767 -25.79814 -24.47882 -23.22801 -22.32163 -21.29650 -19.91161 -19.28090 -18.02740 -17.53142 -16.91064 -16.81434 -16.47632 -16.21517 -15.76852 -15.64487 -15.23361 -15.19741 -14.80639 -14.69183 -14.41049 -14.39866 -13.44834 -13.27127 -13.12246 -13.00884 -12.84974 -12.71201 -12.62490 -12.49022 -12.11997 -12.06569 -11.83312 -11.77104 -11.04350 -10.93760 -10.27265 -10.00429 -9.37338 -9.06953 -8.05801 -5.41160 -0.16356 0.36769 1.39098 1.40424 1.47737 1.85018 2.04159 2.34962 2.46356 2.79792 3.25991 3.57256 3.74572 3.78873 3.90125 3.98551 4.12608 4.18025 4.33519 4.36068 4.36566 4.44347 4.53369 4.65894 4.71825 4.92901 4.95123 4.98459 5.05908 5.07842 5.24386 5.29876 5.34420 5.57424 5.71794 5.77982 6.17252 6.37962 6.54616 7.02333 7.20890 7.76806 7.94787 9.15015 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024648 B = 0.003362 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.729790 B = 8326.728442 C = 9431.406029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.156 3.844 4 C -0.215 4.215 5 C -0.047 4.047 6 C -0.135 4.135 7 C -0.109 4.109 8 C -0.050 4.050 9 C -0.195 4.195 10 C 0.553 3.447 11 O -0.569 6.569 12 N -0.711 5.711 13 C 0.124 3.876 14 C 0.151 3.849 15 N -0.759 5.759 16 C -0.238 4.238 17 H 0.065 0.935 18 C -0.058 4.058 19 N -0.980 5.980 20 Si 0.951 3.049 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.256 1.256 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.413 0.587 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.366 0.634 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.463 18.141 0.010 32.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.108 3.892 4 C -0.234 4.234 5 C -0.064 4.064 6 C -0.135 4.135 7 C -0.166 4.166 8 C -0.069 4.069 9 C -0.199 4.199 10 C 0.342 3.658 11 O -0.449 6.449 12 N -0.365 5.365 13 C 0.000 4.000 14 C 0.025 3.975 15 N -0.405 5.405 16 C -0.369 4.369 17 H 0.083 0.917 18 C -0.250 4.250 19 N -0.630 5.630 20 Si 0.778 3.222 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.180 1.180 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.124 0.876 27 H 0.177 0.823 28 H 0.181 0.819 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.167 0.833 33 H 0.251 0.749 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.199 0.801 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.558 17.272 0.013 32.523 hybrid contribution 0.155 -1.062 -0.009 1.074 sum -27.403 16.210 0.004 31.838 Atomic orbital electron populations 1.23412 0.76699 1.05296 1.02693 1.86337 1.23159 1.26661 1.86984 1.19389 0.91155 0.85710 0.92969 1.21515 1.01441 0.91205 1.09191 1.21460 0.94133 0.97882 0.92973 1.20112 0.94047 0.96154 1.03189 1.20800 1.00877 0.91610 1.03277 1.21307 1.00863 0.89741 0.94982 1.19338 0.91231 0.93621 1.15733 1.18493 0.82120 0.89212 0.75935 1.90785 1.72432 1.30604 1.51086 1.45608 1.05439 1.10126 1.75292 1.21225 0.90003 0.87146 1.01651 1.20822 0.87739 0.89019 0.99940 1.42559 1.02670 1.04048 1.91264 1.19019 0.82004 0.93985 1.41854 0.91691 1.25462 0.95769 1.01486 1.02333 1.69861 1.05092 1.28730 1.59295 0.85467 0.78431 0.80057 0.78215 1.20336 1.21873 1.18044 0.90923 0.90930 0.87557 0.82315 0.81938 0.90355 0.89941 0.90934 0.83341 0.74884 0.92307 0.92169 0.93863 0.93965 0.80071 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -8.63 8.57 -68.75 -0.59 -9.22 16 3 C 0.16 3.75 6.70 22.85 0.15 3.90 16 4 C -0.22 -3.33 9.03 22.34 0.20 -3.13 16 5 C -0.05 -0.56 9.68 22.30 0.22 -0.34 16 6 C -0.13 -1.85 5.87 -19.90 -0.12 -1.97 16 7 C -0.11 -0.89 10.00 71.24 0.71 -0.17 16 8 C -0.05 -0.91 9.18 22.52 0.21 -0.71 16 9 C -0.20 -5.00 5.89 -20.01 -0.12 -5.12 16 10 C 0.55 17.85 7.76 86.69 0.67 18.53 16 11 O -0.57 -23.22 15.16 16.90 0.26 -22.97 16 12 N -0.71 -20.09 5.51 -466.26 -2.57 -22.66 16 13 C 0.12 4.19 5.79 86.38 0.50 4.69 16 14 C 0.15 5.64 6.37 86.38 0.55 6.19 16 15 N -0.76 -36.21 5.41 -343.46 -1.86 -38.07 16 16 C -0.24 -13.67 10.47 84.03 0.88 -12.79 16 17 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 18 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 19 N -0.98 -62.99 13.97 21.65 0.30 -62.69 16 20 Si 0.95 46.44 27.74 68.60 1.90 48.34 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 23 H -0.26 -11.52 6.52 99.48 0.65 -10.87 16 24 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 25 H 0.07 0.78 7.66 -2.38 -0.02 0.77 16 26 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.16 1.53 6.30 -2.91 -0.02 1.51 16 28 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.43 8.09 -2.39 -0.02 0.41 16 31 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 32 H 0.15 2.06 6.40 -2.91 -0.02 2.04 16 33 H 0.41 8.85 6.50 -92.71 -0.60 8.25 16 34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.37 17.01 5.53 -92.71 -0.51 16.50 16 39 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -79.83 328.64 2.79 -77.04 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.10 Total: 22.85 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 5.44 Total: 7.37 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -4.12 Total: -123.41 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.33 Total: -32.19 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.90 Total: 48.34 kcal Total: -79.83 2.79 -77.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130981741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.754 kcal (2) G-P(sol) polarization free energy of solvation -79.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds