Wall clock time and date at job start Mon Mar 30 2020 23:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99830 * 2 1 4 4 C 1.38495 * 119.98775 * 0.02562 * 3 2 1 5 5 C 1.39484 * 119.79613 * 180.02562 * 4 3 2 6 6 C 1.47857 * 120.12168 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99620 * 359.96593 * 6 5 4 8 8 N 1.34769 * 120.00452 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00332 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47197 * 179.97438 * 9 8 6 11 11 N 1.46500 * 109.46856 * 179.97438 * 10 9 8 12 12 C 1.36939 * 119.99797 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00083 * 180.02562 * 12 11 10 15 15 N 1.31620 * 119.99951 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99969 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47449 * 89.99734 * 16 14 12 18 18 H 1.48503 * 109.47047 * 209.99564 * 16 14 12 19 19 H 1.48500 * 109.47238 * 329.99499 * 16 14 12 20 20 C 1.39609 * 119.76370 * 359.97438 * 5 4 3 21 21 C 1.37962 * 119.96299 * 0.26252 * 20 5 4 22 22 C 1.38285 * 120.20790 * 359.50742 * 21 20 5 23 23 C 1.50703 * 119.88229 * 180.23652 * 22 21 20 24 24 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46847 * 299.99835 * 1 2 3 26 26 H 1.09000 * 109.47430 * 60.00018 * 1 2 3 27 27 H 1.07998 * 120.10280 * 0.02562 * 4 3 2 28 28 H 0.97005 * 120.00039 * 359.97438 * 8 6 5 29 29 H 1.09003 * 109.46590 * 299.99292 * 9 8 6 30 30 H 1.08996 * 109.47289 * 59.99550 * 9 8 6 31 31 H 1.09008 * 109.46937 * 299.99760 * 10 9 8 32 32 H 1.08996 * 109.47202 * 59.99700 * 10 9 8 33 33 H 0.96991 * 120.00173 * 359.97438 * 11 10 9 34 34 H 0.96997 * 120.00083 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.01472 * 179.97438 * 20 5 4 36 36 H 1.07998 * 119.89112 * 179.73991 * 21 20 5 37 37 H 1.09004 * 109.47233 * 270.23400 * 23 22 21 38 38 H 1.09001 * 109.46917 * 30.23137 * 23 22 21 39 39 H 1.08997 * 109.47537 * 150.22946 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3723 0.0005 5 6 1.9288 3.6130 0.0000 6 6 1.1302 4.8574 0.0011 7 8 -0.0840 4.8003 0.0019 8 7 1.7485 6.0549 0.0011 9 6 0.9572 7.2879 0.0017 10 6 1.8958 8.4962 0.0022 11 7 1.1045 9.7291 0.0021 12 6 1.7328 10.9459 0.0020 13 1 2.8116 10.9966 0.0024 14 6 0.9830 12.1141 0.0025 15 7 -0.3317 12.0523 0.0026 16 14 1.8401 13.7739 0.0031 17 1 2.0672 14.2143 -1.3968 18 1 0.9898 14.7698 0.7035 19 1 3.1445 13.6572 0.7031 20 6 3.3234 3.6757 -0.0005 21 6 4.0655 2.5126 -0.0060 22 6 3.4322 1.2833 -0.0007 23 6 4.2500 0.0174 -0.0013 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2128 2.3174 0.0014 28 1 2.7175 6.1004 0.0007 29 1 0.3283 7.3163 -0.8882 30 1 0.3289 7.3159 0.8918 31 1 2.5245 8.4675 0.8923 32 1 2.5245 8.4683 -0.8877 33 1 0.1357 9.6835 0.0014 34 1 -0.8556 12.8686 0.0033 35 1 3.8211 4.6342 -0.0014 36 1 5.1443 2.5625 -0.0107 37 1 4.4464 -0.2878 -1.0292 38 1 5.1951 0.1952 0.5118 39 1 3.7001 -0.7707 0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131037164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:38 Heat of formation + Delta-G solvation = -41.129382 kcal Electronic energy + Delta-G solvation = -20425.094113 eV Core-core repulsion = 17140.266356 eV Total energy + Delta-G solvation = -3284.827756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74930 -39.40260 -37.47128 -35.73002 -33.93676 -33.14760 -31.25533 -30.43752 -28.40580 -27.89350 -26.74883 -23.78664 -22.63542 -22.36907 -21.48536 -20.48033 -18.57019 -17.33756 -16.67156 -16.44739 -16.10527 -15.75324 -15.33974 -15.30723 -14.57207 -14.26872 -14.03544 -13.97311 -13.66976 -13.60690 -13.20354 -12.86968 -12.57813 -12.41687 -12.30992 -11.70690 -11.52562 -11.40073 -11.30301 -11.11501 -10.83996 -10.81545 -10.14348 -9.96677 -9.74027 -9.17394 -8.99712 -8.85179 -8.45213 -7.00745 -5.80563 -3.11446 0.60343 1.10480 2.77441 2.93694 3.19016 3.41837 3.46779 3.48743 3.65678 4.41052 4.48653 4.57289 4.74566 4.75909 4.83317 4.89907 4.99039 5.18176 5.25016 5.32465 5.36262 5.46652 5.49031 5.52639 5.75909 5.81134 5.92193 5.94904 6.05340 6.10844 6.13639 6.38229 6.45386 6.68418 6.71818 7.02652 7.56540 7.64888 8.24578 8.37056 9.48289 10.02802 10.37604 11.42065 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039709 B = 0.002672 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.960797 B =10475.052545 C =11148.961031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.117 3.883 4 C -0.147 4.147 5 C -0.096 4.096 6 C 0.554 3.446 7 O -0.538 6.538 8 N -0.715 5.715 9 C 0.110 3.890 10 C 0.144 3.856 11 N -0.729 5.729 12 C -0.244 4.244 13 H 0.072 0.928 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.911 3.089 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.118 4.118 21 C -0.091 4.091 22 C -0.096 4.096 23 C -0.108 4.108 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.142 0.858 28 H 0.400 0.600 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.180 -26.085 -0.002 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.228 6.228 3 C 0.071 3.929 4 C -0.166 4.166 5 C -0.099 4.099 6 C 0.340 3.660 7 O -0.417 6.417 8 N -0.367 5.367 9 C -0.013 4.013 10 C 0.016 3.984 11 N -0.375 5.375 12 C -0.375 4.375 13 H 0.090 0.910 14 C -0.209 4.209 15 N -0.579 5.579 16 Si 0.741 3.259 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.137 4.137 21 C -0.109 4.109 22 C -0.097 4.097 23 C -0.164 4.164 24 H 0.119 0.881 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.160 0.840 28 H 0.235 0.765 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.492 -26.145 0.009 27.198 hybrid contribution 0.259 1.234 -0.017 1.261 sum 7.751 -24.912 -0.009 26.089 Atomic orbital electron populations 1.23120 0.78019 1.04031 1.01945 1.86048 1.21598 1.26309 1.88796 1.18690 0.91718 0.84242 0.98210 1.21329 1.01029 0.90735 1.03553 1.19767 0.93577 0.93159 1.03380 1.18212 0.87480 0.83425 0.76882 1.90773 1.13679 1.87352 1.49856 1.45848 1.10648 1.05775 1.74406 1.21629 0.94667 0.82257 1.02772 1.20760 0.93421 0.85720 0.98478 1.42186 1.05738 0.99826 1.89711 1.19193 0.91394 0.83481 1.43453 0.91008 1.24787 0.95481 0.97937 1.02650 1.69668 1.03730 1.27312 1.57181 0.86141 0.78300 0.83867 0.77555 1.21610 1.21679 1.20693 1.21255 0.92556 0.99055 1.00865 1.20830 1.00121 0.90640 0.99311 1.19461 0.90594 0.96474 1.03188 1.20664 0.98849 0.94371 1.02532 0.88074 0.92336 0.92316 0.84005 0.76514 0.91060 0.91061 0.95724 0.95738 0.77982 0.93340 0.85137 0.84617 0.91079 0.91393 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.09 9.52 -19.43 -0.19 -3.27 16 3 C 0.12 1.26 6.65 -39.27 -0.26 1.00 16 4 C -0.15 -1.77 8.58 -39.02 -0.33 -2.11 16 5 C -0.10 -1.20 5.87 -104.98 -0.62 -1.82 16 6 C 0.55 8.52 7.77 -12.33 -0.10 8.43 16 7 O -0.54 -10.23 16.35 5.32 0.09 -10.14 16 8 N -0.72 -10.20 5.51 -61.24 -0.34 -10.54 16 9 C 0.11 1.92 5.79 -4.04 -0.02 1.90 16 10 C 0.14 2.83 6.37 -4.04 -0.03 2.81 16 11 N -0.73 -18.60 5.60 -59.90 -0.34 -18.94 16 12 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 13 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 14 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 15 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 16 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 C -0.12 -1.16 9.54 -39.17 -0.37 -1.54 16 21 C -0.09 -0.78 9.68 -39.67 -0.38 -1.16 16 22 C -0.10 -0.91 5.90 -104.39 -0.62 -1.52 16 23 C -0.11 -0.75 9.78 36.01 0.35 -0.40 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.14 1.71 5.88 -52.49 -0.31 1.40 16 28 H 0.40 4.49 6.50 -40.82 -0.27 4.22 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.39 10.43 7.67 -40.82 -0.31 10.11 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.13 1.00 6.40 -52.49 -0.34 0.66 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 39 H 0.07 0.53 7.52 -51.93 -0.39 0.14 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -33.96 332.57 -7.03 -40.99 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.33 Total: 7.91 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.63 Total: -0.68 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.05 Total: -57.10 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.10 Total: -13.42 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.96 -7.03 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131037164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.139 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds