Wall clock time and date at job start Mon Mar 30 2020 23:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99830 * 2 1 4 4 C 1.38495 * 119.98775 * 0.02562 * 3 2 1 5 5 C 1.39484 * 119.79613 * 180.02562 * 4 3 2 6 6 C 1.47857 * 120.12168 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99620 * 359.96593 * 6 5 4 8 8 N 1.34769 * 120.00452 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00332 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47197 * 179.97438 * 9 8 6 11 11 N 1.46500 * 109.46856 * 179.97438 * 10 9 8 12 12 C 1.36939 * 119.99797 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.38814 * 120.00083 * 180.02562 * 12 11 10 15 15 N 1.31620 * 119.99951 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99969 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47449 * 89.99734 * 16 14 12 18 18 H 1.48503 * 109.47047 * 209.99564 * 16 14 12 19 19 H 1.48500 * 109.47238 * 329.99499 * 16 14 12 20 20 C 1.39609 * 119.76370 * 359.97438 * 5 4 3 21 21 C 1.37962 * 119.96299 * 0.26252 * 20 5 4 22 22 C 1.38285 * 120.20790 * 359.50742 * 21 20 5 23 23 C 1.50703 * 119.88229 * 180.23652 * 22 21 20 24 24 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46847 * 299.99835 * 1 2 3 26 26 H 1.09000 * 109.47430 * 60.00018 * 1 2 3 27 27 H 1.07998 * 120.10280 * 0.02562 * 4 3 2 28 28 H 0.97005 * 120.00039 * 359.97438 * 8 6 5 29 29 H 1.09003 * 109.46590 * 299.99292 * 9 8 6 30 30 H 1.08996 * 109.47289 * 59.99550 * 9 8 6 31 31 H 1.09008 * 109.46937 * 299.99760 * 10 9 8 32 32 H 1.08996 * 109.47202 * 59.99700 * 10 9 8 33 33 H 0.96991 * 120.00173 * 359.97438 * 11 10 9 34 34 H 0.96997 * 120.00083 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.01472 * 179.97438 * 20 5 4 36 36 H 1.07998 * 119.89112 * 179.73991 * 21 20 5 37 37 H 1.09004 * 109.47233 * 270.23400 * 23 22 21 38 38 H 1.09001 * 109.46917 * 30.23137 * 23 22 21 39 39 H 1.08997 * 109.47537 * 150.22946 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3723 0.0005 5 6 1.9288 3.6130 0.0000 6 6 1.1302 4.8574 0.0011 7 8 -0.0840 4.8003 0.0019 8 7 1.7485 6.0549 0.0011 9 6 0.9572 7.2879 0.0017 10 6 1.8958 8.4962 0.0022 11 7 1.1045 9.7291 0.0021 12 6 1.7328 10.9459 0.0020 13 1 2.8116 10.9966 0.0024 14 6 0.9830 12.1141 0.0025 15 7 -0.3317 12.0523 0.0026 16 14 1.8401 13.7739 0.0031 17 1 2.0672 14.2143 -1.3968 18 1 0.9898 14.7698 0.7035 19 1 3.1445 13.6572 0.7031 20 6 3.3234 3.6757 -0.0005 21 6 4.0655 2.5126 -0.0060 22 6 3.4322 1.2833 -0.0007 23 6 4.2500 0.0174 -0.0013 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2128 2.3174 0.0014 28 1 2.7175 6.1004 0.0007 29 1 0.3283 7.3163 -0.8882 30 1 0.3289 7.3159 0.8918 31 1 2.5245 8.4675 0.8923 32 1 2.5245 8.4683 -0.8877 33 1 0.1357 9.6835 0.0014 34 1 -0.8556 12.8686 0.0033 35 1 3.8211 4.6342 -0.0014 36 1 5.1443 2.5625 -0.0107 37 1 4.4464 -0.2878 -1.0292 38 1 5.1951 0.1952 0.5118 39 1 3.7001 -0.7707 0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131037164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:37 Heat of formation + Delta-G solvation = -65.193965 kcal Electronic energy + Delta-G solvation = -20426.137632 eV Core-core repulsion = 17140.266356 eV Total energy + Delta-G solvation = -3285.871275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62941 -40.48061 -38.26733 -37.35725 -35.59815 -34.01849 -33.09243 -31.24469 -29.82951 -28.54052 -27.83568 -25.58433 -23.64328 -23.33320 -22.90162 -21.52606 -19.65124 -19.22138 -17.64420 -17.41415 -16.87685 -16.85543 -16.63649 -16.45015 -16.25231 -15.38426 -15.28522 -15.08523 -14.88580 -14.73960 -14.40683 -14.38243 -13.20329 -13.18375 -13.07102 -13.00623 -12.93460 -12.67687 -12.55518 -12.33616 -12.18376 -12.08849 -12.08121 -11.86978 -11.16319 -10.99824 -10.29803 -9.88797 -9.22477 -9.07625 -7.97319 -5.28983 -0.27591 0.34314 1.48618 1.51154 1.59548 1.73302 1.94654 2.30041 2.57421 2.75751 3.37111 3.50660 3.75860 3.90252 3.95603 4.09958 4.12952 4.17233 4.18755 4.31580 4.35841 4.52949 4.55166 4.69652 4.73159 4.75877 4.88045 4.96790 5.10863 5.16108 5.23483 5.25824 5.31995 5.42377 5.48408 5.70210 6.23364 6.28877 6.42758 7.07498 7.29616 8.01006 8.24063 9.26520 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039709 B = 0.002672 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.960797 B =10475.052545 C =11148.961031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.321 6.321 3 C 0.105 3.895 4 C -0.162 4.162 5 C -0.119 4.119 6 C 0.553 3.447 7 O -0.585 6.585 8 N -0.702 5.702 9 C 0.127 3.873 10 C 0.149 3.851 11 N -0.748 5.748 12 C -0.248 4.248 13 H 0.085 0.915 14 C -0.078 4.078 15 N -0.972 5.972 16 Si 0.980 3.020 17 H -0.286 1.286 18 H -0.297 1.297 19 H -0.265 1.265 20 C -0.112 4.112 21 C -0.085 4.085 22 C -0.095 4.095 23 C -0.106 4.106 24 H 0.128 0.872 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.129 0.871 28 H 0.417 0.583 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.374 0.626 34 H 0.252 0.748 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.389 -27.090 0.002 29.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.235 6.235 3 C 0.060 3.940 4 C -0.182 4.182 5 C -0.122 4.122 6 C 0.341 3.659 7 O -0.466 6.466 8 N -0.354 5.354 9 C 0.002 3.998 10 C 0.022 3.978 11 N -0.391 5.391 12 C -0.379 4.379 13 H 0.102 0.898 14 C -0.270 4.270 15 N -0.622 5.622 16 Si 0.808 3.192 17 H -0.213 1.213 18 H -0.224 1.224 19 H -0.189 1.189 20 C -0.131 4.131 21 C -0.103 4.103 22 C -0.096 4.096 23 C -0.163 4.163 24 H 0.146 0.854 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.147 0.853 28 H 0.256 0.744 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.205 0.795 34 H 0.061 0.939 35 H 0.172 0.828 36 H 0.190 0.810 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.779 -27.190 0.013 29.249 hybrid contribution -0.690 1.385 -0.022 1.548 sum 10.089 -25.805 -0.008 27.707 Atomic orbital electron populations 1.23305 0.76943 1.05670 1.01657 1.86037 1.22756 1.25917 1.88749 1.18883 0.92527 0.84023 0.98613 1.21325 1.00773 0.91448 1.04663 1.19593 0.94640 0.91566 1.06374 1.18716 0.87181 0.84363 0.75603 1.90744 1.15819 1.87999 1.52043 1.45607 1.11308 1.04474 1.74037 1.21217 0.94251 0.82992 1.01345 1.20851 0.93256 0.84160 0.99494 1.42429 1.05641 1.01233 1.89804 1.19664 0.92095 0.84465 1.41676 0.89751 1.25693 0.96160 1.01823 1.03352 1.69840 1.05350 1.27859 1.59186 0.85045 0.77621 0.78986 0.77500 1.21261 1.22359 1.18926 1.21536 0.91230 1.00834 0.99456 1.21246 1.01806 0.89562 0.97656 1.19927 0.90221 0.98063 1.01424 1.20731 0.99276 0.92919 1.03346 0.85435 0.92671 0.92648 0.85270 0.74442 0.92623 0.92624 0.94202 0.94206 0.79470 0.93898 0.82821 0.80984 0.90141 0.89184 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.32 -6.11 9.52 -92.46 -0.88 -6.99 16 3 C 0.10 2.18 6.65 22.47 0.15 2.33 16 4 C -0.16 -3.98 8.58 22.63 0.19 -3.78 16 5 C -0.12 -2.92 5.87 -20.10 -0.12 -3.04 16 6 C 0.55 17.21 7.77 86.79 0.67 17.88 16 7 O -0.58 -23.25 16.35 -3.88 -0.06 -23.32 16 8 N -0.70 -19.48 5.51 -465.96 -2.57 -22.04 16 9 C 0.13 4.44 5.79 86.38 0.50 4.94 16 10 C 0.15 5.68 6.37 86.38 0.55 6.23 16 11 N -0.75 -38.14 5.60 -343.44 -1.92 -40.06 16 12 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 13 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 14 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 15 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 16 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 C -0.11 -1.91 9.54 22.54 0.21 -1.69 16 21 C -0.09 -1.16 9.68 22.22 0.21 -0.94 16 22 C -0.10 -1.56 5.90 -19.71 -0.12 -1.67 16 23 C -0.11 -1.16 9.78 71.24 0.70 -0.47 16 24 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 0.81 7.66 -2.39 -0.02 0.79 16 26 H 0.05 0.82 7.66 -2.39 -0.02 0.80 16 27 H 0.13 3.37 5.88 -2.91 -0.02 3.35 16 28 H 0.42 8.43 6.50 -92.70 -0.60 7.83 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.37 20.67 7.67 -92.72 -0.71 19.96 16 34 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.15 1.79 6.40 -2.91 -0.02 1.78 16 36 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 39 H 0.07 0.82 7.52 -2.39 -0.02 0.81 16 Total: -1.00 -74.31 332.57 2.02 -72.29 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.24 Total: 28.06 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 5.38 Total: 4.31 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -4.21 Total: -122.05 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.94 Total: -30.31 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.31 2.02 -72.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131037164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.093 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds