Wall clock time and date at job start Mon Mar 30 2020 23:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35707 * 117.00064 * 2 1 4 4 C 1.39017 * 119.91195 * 0.02562 * 3 2 1 5 5 C 1.37679 * 120.08848 * 179.97438 * 4 3 2 6 6 C 1.39749 * 119.91327 * 0.02562 * 5 4 3 7 7 C 1.47609 * 120.09051 * 180.27393 * 6 5 4 8 8 O 1.21586 * 119.99905 * 173.71158 * 7 6 5 9 9 N 1.34778 * 119.99734 * 353.71204 * 7 6 5 10 10 C 1.46505 * 119.99880 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46836 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46836 * 179.97438 * 11 10 9 13 13 C 1.36931 * 119.99755 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00425 * 0.02562 * 13 12 11 15 15 C 1.38821 * 119.99936 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99723 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00210 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47291 * 59.99835 * 17 15 13 19 19 H 1.48500 * 109.47158 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46861 * 300.00143 * 17 15 13 21 21 C 1.39716 * 119.82608 * 359.97438 * 6 5 4 22 22 C 1.50697 * 120.05031 * 180.02562 * 21 6 5 23 23 C 1.37725 * 119.90620 * 0.02562 * 21 6 5 24 24 H 1.09003 * 109.46749 * 60.00391 * 1 2 3 25 25 H 1.09000 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47471 * 300.00384 * 1 2 3 27 27 H 1.07998 * 119.95710 * 0.02562 * 4 3 2 28 28 H 1.08009 * 120.04334 * 180.02562 * 5 4 3 29 29 H 0.97004 * 120.00038 * 0.02562 * 9 7 6 30 30 H 1.09007 * 109.46732 * 300.00188 * 10 9 7 31 31 H 1.09000 * 109.46671 * 59.99732 * 10 9 7 32 32 H 1.09004 * 109.46889 * 299.99581 * 11 10 9 33 33 H 1.08998 * 109.47434 * 60.00190 * 11 10 9 34 34 H 0.96996 * 119.99760 * 359.97438 * 12 11 10 35 35 H 0.96996 * 119.99563 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.46909 * 83.44058 * 22 21 6 37 37 H 1.08995 * 109.47738 * 203.45121 * 22 21 6 38 38 H 1.09000 * 109.46913 * 323.44997 * 22 21 6 39 39 H 1.07999 * 119.95013 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2862 2.3739 0.0005 5 6 1.9075 3.6025 0.0011 6 6 3.3029 3.6778 0.0005 7 6 3.9731 4.9930 0.0072 8 8 5.1817 5.0588 0.1221 9 7 3.2452 6.1208 -0.1140 10 6 3.9104 7.4261 -0.1080 11 6 2.8642 8.5323 -0.2585 12 7 3.5293 9.8376 -0.2518 13 6 2.7897 10.9835 -0.3749 14 1 1.7161 10.9250 -0.4764 15 6 3.4198 12.2204 -0.3680 16 7 4.7282 12.2917 -0.2437 17 14 2.4110 13.7836 -0.5352 18 1 1.4409 13.8689 0.5860 19 1 3.3140 14.9619 -0.4985 20 1 1.6758 13.7626 -1.8252 21 6 4.0622 2.5050 0.0000 22 6 5.5672 2.5803 0.0000 23 6 3.4331 1.2798 -0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2078 2.3149 0.0014 28 1 1.3171 4.5070 0.0019 29 1 2.2809 6.0683 -0.2053 30 1 4.4446 7.5573 0.8331 31 1 4.6164 7.4779 -0.9368 32 1 2.3297 8.4012 -1.1994 33 1 2.1585 8.4803 0.5706 34 1 4.4935 9.8902 -0.1602 35 1 5.1685 13.1559 -0.2393 36 1 5.9242 2.7152 1.0210 37 1 5.9773 1.6571 -0.4094 38 1 5.8888 3.4232 -0.6116 39 1 4.0192 0.3727 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133193581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:52 Heat of formation + Delta-G solvation = -59.862296 kcal Electronic energy + Delta-G solvation = -20519.383946 eV Core-core repulsion = 17233.743869 eV Total energy + Delta-G solvation = -3285.640077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.62534 -40.47692 -38.30377 -37.28096 -35.64585 -33.63992 -33.03369 -31.78752 -29.65948 -28.36884 -27.50141 -25.68269 -24.38946 -23.26485 -22.29626 -21.48072 -19.36594 -18.86605 -18.50265 -17.57011 -16.85164 -16.76166 -16.59497 -16.35505 -15.94300 -15.40884 -15.29220 -14.97998 -14.90576 -14.43400 -14.22340 -14.18916 -13.75826 -13.14791 -13.11233 -13.04356 -12.93277 -12.75293 -12.62001 -12.52480 -12.12025 -11.93300 -11.86007 -11.82058 -10.97681 -10.73933 -10.18275 -9.88159 -9.27889 -9.06670 -7.96436 -5.28010 -0.13718 0.27975 1.48625 1.52506 1.58632 1.81968 2.06681 2.27487 2.58472 2.76724 3.37568 3.67989 3.70766 3.80211 4.01198 4.08203 4.16453 4.22559 4.28244 4.39512 4.43061 4.46082 4.57838 4.72868 4.77021 4.81840 4.91620 5.01840 5.03385 5.13165 5.18535 5.23012 5.40122 5.49180 5.55995 5.62413 6.24103 6.33932 6.52751 7.20461 7.30350 8.02166 8.25336 9.27100 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031755 B = 0.002801 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.550840 B = 9994.446981 C =10841.348171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.155 3.845 4 C -0.219 4.219 5 C -0.035 4.035 6 C -0.197 4.197 7 C 0.555 3.445 8 O -0.572 6.572 9 N -0.709 5.709 10 C 0.129 3.871 11 C 0.149 3.851 12 N -0.747 5.747 13 C -0.249 4.249 14 H 0.084 0.916 15 C -0.078 4.078 16 N -0.971 5.971 17 Si 0.980 3.020 18 H -0.275 1.275 19 H -0.297 1.297 20 H -0.275 1.275 21 C 0.005 3.995 22 C -0.118 4.118 23 C -0.174 4.174 24 H 0.069 0.931 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.164 0.836 28 H 0.154 0.846 29 H 0.413 0.587 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.374 0.626 35 H 0.252 0.748 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 -27.201 0.268 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.109 3.891 4 C -0.238 4.238 5 C -0.054 4.054 6 C -0.201 4.201 7 C 0.344 3.656 8 O -0.454 6.454 9 N -0.362 5.362 10 C 0.005 3.995 11 C 0.022 3.978 12 N -0.391 5.391 13 C -0.381 4.381 14 H 0.101 0.899 15 C -0.270 4.270 16 N -0.621 5.621 17 Si 0.808 3.192 18 H -0.201 1.201 19 H -0.223 1.223 20 H -0.201 1.201 21 C 0.003 3.997 22 C -0.174 4.174 23 C -0.192 4.192 24 H 0.088 0.912 25 H 0.138 0.862 26 H 0.088 0.912 27 H 0.182 0.818 28 H 0.171 0.829 29 H 0.251 0.749 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.206 0.794 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.341 -27.237 0.327 29.136 hybrid contribution -0.313 1.275 -0.032 1.313 sum -10.654 -25.962 0.295 28.064 Atomic orbital electron populations 1.23454 0.75879 1.05935 1.02764 1.86036 1.23948 1.26475 1.87574 1.19406 0.92304 0.85020 0.92417 1.21443 1.01773 0.91046 1.09506 1.21347 0.92193 0.99090 0.92731 1.19641 0.94671 0.91898 1.13860 1.18569 0.86519 0.84711 0.75754 1.90723 1.15441 1.87663 1.51528 1.45642 1.11557 1.04831 1.74152 1.21158 0.95491 0.81693 1.01192 1.20847 0.93879 0.83839 0.99216 1.42419 1.06676 1.01124 1.88841 1.19621 0.91852 0.85351 1.41258 0.89861 1.25692 0.96833 1.01168 1.03289 1.69835 1.09063 1.24560 1.58676 0.85117 0.77268 0.78403 0.78373 1.20078 1.22332 1.20074 1.19907 0.96849 0.91073 0.91830 1.21025 0.89856 1.03319 1.03213 1.20387 0.91964 0.97957 1.08928 0.91190 0.86185 0.91237 0.81832 0.82853 0.74893 0.92713 0.92719 0.94434 0.94395 0.79446 0.93890 0.91032 0.90138 0.90711 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.95 10.48 -90.27 -0.95 -5.90 16 3 C 0.16 2.70 6.70 22.63 0.15 2.85 16 4 C -0.22 -3.21 9.01 22.32 0.20 -3.01 16 5 C -0.04 -0.61 9.52 22.50 0.21 -0.40 16 6 C -0.20 -4.77 5.88 -20.08 -0.12 -4.89 16 7 C 0.55 16.78 7.69 86.72 0.67 17.44 16 8 O -0.57 -21.40 13.33 -3.99 -0.05 -21.45 16 9 N -0.71 -19.56 5.50 -466.18 -2.57 -22.12 16 10 C 0.13 4.52 5.79 86.38 0.50 5.02 16 11 C 0.15 5.70 6.37 86.38 0.55 6.25 16 12 N -0.75 -38.21 5.60 -343.44 -1.92 -40.13 16 13 C -0.25 -13.81 9.99 84.04 0.84 -12.97 16 14 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 15 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 16 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 17 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 C 0.00 0.11 5.91 -19.63 -0.12 -0.01 16 22 C -0.12 -2.81 8.72 71.24 0.62 -2.19 16 23 C -0.17 -3.40 9.60 22.32 0.21 -3.19 16 24 H 0.07 0.32 7.65 -2.39 -0.02 0.31 16 25 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 27 H 0.16 1.34 6.28 -2.91 -0.02 1.32 16 28 H 0.15 1.86 6.44 -2.91 -0.02 1.84 16 29 H 0.41 8.46 6.53 -92.71 -0.61 7.86 16 30 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.37 20.70 7.67 -92.71 -0.71 19.99 16 35 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.47 8.04 -2.39 -0.02 1.45 16 38 H 0.07 2.18 5.86 -2.39 -0.01 2.17 16 39 H 0.15 2.42 8.05 -2.91 -0.02 2.39 16 Total: -1.00 -72.70 328.50 1.89 -70.82 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.24 Total: 28.81 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.30 Total: 2.12 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -4.21 Total: -122.13 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -1.00 Total: -27.35 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -72.70 1.89 -70.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133193581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.953 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds