Wall clock time and date at job start Mon Mar 30 2020 23:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35911 * 117.00010 * 2 1 4 4 C 1.38850 * 119.98446 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.24131 * 180.02562 * 4 3 2 6 6 C 1.38000 * 120.20507 * 359.97438 * 5 4 3 7 7 C 1.39567 * 119.96717 * 0.02562 * 6 5 4 8 8 C 1.47860 * 120.11960 * 179.97438 * 7 6 5 9 9 O 1.21549 * 120.00150 * 173.82608 * 8 7 6 10 10 N 1.34781 * 119.99879 * 353.83421 * 8 7 6 11 11 C 1.46500 * 119.99470 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46536 * 179.97438 * 11 10 8 13 13 N 1.46506 * 109.46864 * 180.02562 * 12 11 10 14 14 C 1.36934 * 119.99623 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00435 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99444 * 179.97438 * 14 13 12 17 17 N 1.31613 * 120.00594 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99797 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47142 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47574 * 119.99524 * 18 16 14 21 21 H 1.48496 * 109.47058 * 240.00104 * 18 16 14 22 22 C 1.38453 * 119.98688 * 180.02562 * 3 2 1 23 23 C 1.50698 * 120.10250 * 0.25264 * 22 3 2 24 24 H 1.09005 * 109.47155 * 299.99362 * 1 2 3 25 25 H 1.08994 * 109.47184 * 59.99443 * 1 2 3 26 26 H 1.08998 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.88420 * 0.03906 * 4 3 2 28 28 H 1.07997 * 119.89510 * 179.97438 * 5 4 3 29 29 H 1.08007 * 120.01926 * 179.97438 * 6 5 4 30 30 H 0.96997 * 119.99883 * 359.97438 * 10 8 7 31 31 H 1.08996 * 109.47033 * 299.99333 * 11 10 8 32 32 H 1.08995 * 109.47247 * 60.00208 * 11 10 8 33 33 H 1.08996 * 109.46962 * 299.99434 * 12 11 10 34 34 H 1.09000 * 109.47166 * 59.99720 * 12 11 10 35 35 H 0.97002 * 119.99798 * 359.97438 * 13 12 11 36 36 H 0.96994 * 120.00357 * 180.02562 * 17 16 14 37 37 H 1.08993 * 109.47557 * 262.92537 * 23 22 3 38 38 H 1.09000 * 109.47186 * 22.92973 * 23 22 3 39 39 H 1.09004 * 109.47075 * 142.92636 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3753 -0.0005 5 6 1.9116 3.6099 -0.0011 6 6 3.2890 3.6932 -0.0005 7 6 4.0579 2.5284 0.0000 8 6 5.5341 2.6138 0.0000 9 8 6.2012 1.6041 0.1137 10 7 6.1398 3.8112 -0.1259 11 6 7.6024 3.8957 -0.1253 12 6 8.0287 5.3568 -0.2817 13 7 9.4914 5.4414 -0.2817 14 6 10.1068 6.6579 -0.4098 15 1 9.5140 7.5551 -0.5111 16 6 11.4926 6.7381 -0.4093 17 7 12.2150 5.6449 -0.2853 18 14 12.3322 8.3977 -0.5832 19 1 11.3040 9.4622 -0.7057 20 1 13.1720 8.6556 0.6141 21 1 13.1879 8.3947 -1.7968 22 6 3.4286 1.2831 -0.0005 23 6 4.2514 0.0205 -0.0069 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2111 2.3163 -0.0003 28 1 1.3177 4.5119 -0.0019 29 1 3.7719 4.6593 -0.0014 30 1 5.6074 4.6168 -0.2169 31 1 7.9886 3.5028 0.8151 32 1 8.0005 3.3108 -0.9544 33 1 7.6425 5.7493 -1.2223 34 1 7.6306 5.9422 0.5471 35 1 10.0237 4.6357 -0.1903 36 1 13.1833 5.7010 -0.2846 37 1 4.5564 -0.2195 1.0116 38 1 3.6565 -0.7987 -0.4107 39 1 5.1363 0.1666 -0.6263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134387706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:42 Heat of formation + Delta-G solvation = -34.255101 kcal Electronic energy + Delta-G solvation = -20626.095285 eV Core-core repulsion = 17341.565620 eV Total energy + Delta-G solvation = -3284.529665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80247 -39.44088 -37.31427 -35.76279 -33.99439 -32.78503 -31.53008 -30.48853 -27.99740 -27.68821 -26.78686 -24.08574 -23.03474 -21.93432 -21.29772 -20.44076 -18.47249 -17.29872 -16.82294 -16.24790 -16.14212 -15.96885 -15.51229 -15.34106 -14.57662 -14.11835 -14.01861 -13.94570 -13.37642 -13.16863 -13.14407 -12.86310 -12.58191 -12.34193 -12.23639 -11.85533 -11.50753 -11.34039 -11.19167 -11.10061 -10.82752 -10.80310 -10.08081 -9.81643 -9.54385 -9.20745 -8.96283 -8.76953 -8.41670 -6.99424 -5.79620 -3.10358 0.62586 1.12739 2.80609 2.84420 3.33375 3.42253 3.47824 3.50060 3.65591 4.44008 4.47390 4.58470 4.71605 4.74194 4.77149 4.81216 5.04161 5.11061 5.21989 5.50215 5.50320 5.54647 5.66799 5.78221 5.86903 5.94840 5.96188 6.08147 6.14515 6.17787 6.24572 6.44505 6.59021 6.70353 6.75308 7.04776 7.60342 7.66391 8.29607 8.38009 9.49312 10.04029 10.38820 11.43024 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047059 B = 0.002716 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.856552 B =10307.008664 C =10864.798355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.114 3.886 4 C -0.184 4.184 5 C -0.095 4.095 6 C -0.118 4.118 7 C -0.099 4.099 8 C 0.554 3.446 9 O -0.528 6.528 10 N -0.717 5.717 11 C 0.111 3.889 12 C 0.144 3.856 13 N -0.729 5.729 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.930 5.930 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.053 4.053 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.399 0.601 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.024 0.976 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.829 -8.185 0.489 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.069 3.931 4 C -0.203 4.203 5 C -0.114 4.114 6 C -0.137 4.137 7 C -0.102 4.102 8 C 0.341 3.659 9 O -0.406 6.406 10 N -0.368 5.368 11 C -0.012 4.012 12 C 0.016 3.984 13 N -0.375 5.375 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.578 5.578 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.054 4.054 23 C -0.168 4.168 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -26.196 -8.916 0.549 27.677 hybrid contribution 0.048 1.332 -0.077 1.336 sum -26.148 -7.584 0.471 27.229 Atomic orbital electron populations 1.23072 0.78443 1.04049 1.01285 1.86095 1.21182 1.26438 1.88785 1.18679 0.91537 0.84465 0.98468 1.21383 1.00137 0.92316 1.06435 1.20833 0.94285 0.97169 0.99067 1.21245 0.94036 0.97571 1.00884 1.19659 0.93201 0.93037 1.04326 1.18118 0.86979 0.83639 0.77188 1.90747 1.66142 1.34478 1.49196 1.45859 1.08477 1.08623 1.73877 1.21613 0.77789 0.99103 1.02729 1.20762 0.87583 0.91688 0.98363 1.42196 0.98919 1.07637 1.88711 1.19234 0.89617 0.85950 1.42617 0.90973 1.24787 0.96237 0.97244 1.02640 1.69673 1.05058 1.26230 1.56873 0.86078 0.79442 0.83096 0.77297 1.20516 1.21772 1.21776 1.19355 0.90513 0.95757 0.99808 1.20903 0.99663 0.92599 1.03630 0.92644 0.92656 0.88146 0.85167 0.85122 0.85188 0.76623 0.91051 0.91061 0.95764 0.95772 0.77974 0.93397 0.90831 0.92090 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.11 9.43 -19.46 -0.18 -3.30 16 3 C 0.11 1.24 6.65 -39.28 -0.26 0.98 16 4 C -0.18 -1.60 9.03 -39.35 -0.36 -1.96 16 5 C -0.10 -0.80 10.03 -39.66 -0.40 -1.20 16 6 C -0.12 -1.18 9.52 -39.17 -0.37 -1.55 16 7 C -0.10 -1.26 5.87 -104.98 -0.62 -1.88 16 8 C 0.55 8.42 7.70 -12.32 -0.09 8.33 16 9 O -0.53 -9.61 13.36 5.32 0.07 -9.54 16 10 N -0.72 -10.15 5.51 -61.24 -0.34 -10.48 16 11 C 0.11 1.92 5.79 -4.04 -0.02 1.90 16 12 C 0.14 2.82 6.37 -4.03 -0.03 2.80 16 13 N -0.73 -18.58 5.60 -59.90 -0.34 -18.91 16 14 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 15 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 18 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 C -0.05 -0.68 5.93 -104.06 -0.62 -1.29 16 23 C -0.11 -1.47 8.56 36.00 0.31 -1.16 16 24 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 25 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 26 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.13 0.78 6.28 -52.49 -0.33 0.45 16 28 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.13 1.02 6.45 -52.48 -0.34 0.68 16 30 H 0.40 4.48 6.54 -40.82 -0.27 4.22 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.39 10.41 7.67 -40.82 -0.31 10.10 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.72 7.33 -51.93 -0.38 0.34 16 39 H 0.09 1.41 5.89 -51.93 -0.31 1.10 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -33.56 327.10 -7.10 -40.66 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.23 Total: 8.25 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.71 Total: -1.31 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.05 Total: -57.00 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.11 Total: -12.83 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.56 -7.10 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134387706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.408 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds