Wall clock time and date at job start Mon Mar 30 2020 23:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35911 * 117.00010 * 2 1 4 4 C 1.38850 * 119.98446 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.24131 * 180.02562 * 4 3 2 6 6 C 1.38000 * 120.20507 * 359.97438 * 5 4 3 7 7 C 1.39567 * 119.96717 * 0.02562 * 6 5 4 8 8 C 1.47860 * 120.11960 * 179.97438 * 7 6 5 9 9 O 1.21549 * 120.00150 * 173.82608 * 8 7 6 10 10 N 1.34781 * 119.99879 * 353.83421 * 8 7 6 11 11 C 1.46500 * 119.99470 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46536 * 179.97438 * 11 10 8 13 13 N 1.46506 * 109.46864 * 180.02562 * 12 11 10 14 14 C 1.36934 * 119.99623 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00435 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99444 * 179.97438 * 14 13 12 17 17 N 1.31613 * 120.00594 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99797 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47142 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47574 * 119.99524 * 18 16 14 21 21 H 1.48496 * 109.47058 * 240.00104 * 18 16 14 22 22 C 1.38453 * 119.98688 * 180.02562 * 3 2 1 23 23 C 1.50698 * 120.10250 * 0.25264 * 22 3 2 24 24 H 1.09005 * 109.47155 * 299.99362 * 1 2 3 25 25 H 1.08994 * 109.47184 * 59.99443 * 1 2 3 26 26 H 1.08998 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.88420 * 0.03906 * 4 3 2 28 28 H 1.07997 * 119.89510 * 179.97438 * 5 4 3 29 29 H 1.08007 * 120.01926 * 179.97438 * 6 5 4 30 30 H 0.96997 * 119.99883 * 359.97438 * 10 8 7 31 31 H 1.08996 * 109.47033 * 299.99333 * 11 10 8 32 32 H 1.08995 * 109.47247 * 60.00208 * 11 10 8 33 33 H 1.08996 * 109.46962 * 299.99434 * 12 11 10 34 34 H 1.09000 * 109.47166 * 59.99720 * 12 11 10 35 35 H 0.97002 * 119.99798 * 359.97438 * 13 12 11 36 36 H 0.96994 * 120.00357 * 180.02562 * 17 16 14 37 37 H 1.08993 * 109.47557 * 262.92537 * 23 22 3 38 38 H 1.09000 * 109.47186 * 22.92973 * 23 22 3 39 39 H 1.09004 * 109.47075 * 142.92636 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3753 -0.0005 5 6 1.9116 3.6099 -0.0011 6 6 3.2890 3.6932 -0.0005 7 6 4.0579 2.5284 0.0000 8 6 5.5341 2.6138 0.0000 9 8 6.2012 1.6041 0.1137 10 7 6.1398 3.8112 -0.1259 11 6 7.6024 3.8957 -0.1253 12 6 8.0287 5.3568 -0.2817 13 7 9.4914 5.4414 -0.2817 14 6 10.1068 6.6579 -0.4098 15 1 9.5140 7.5551 -0.5111 16 6 11.4926 6.7381 -0.4093 17 7 12.2150 5.6449 -0.2853 18 14 12.3322 8.3977 -0.5832 19 1 11.3040 9.4622 -0.7057 20 1 13.1720 8.6556 0.6141 21 1 13.1879 8.3947 -1.7968 22 6 3.4286 1.2831 -0.0005 23 6 4.2514 0.0205 -0.0069 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2111 2.3163 -0.0003 28 1 1.3177 4.5119 -0.0019 29 1 3.7719 4.6593 -0.0014 30 1 5.6074 4.6168 -0.2169 31 1 7.9886 3.5028 0.8151 32 1 8.0005 3.3108 -0.9544 33 1 7.6425 5.7493 -1.2223 34 1 7.6306 5.9422 0.5471 35 1 10.0237 4.6357 -0.1903 36 1 13.1833 5.7010 -0.2846 37 1 4.5564 -0.2195 1.0116 38 1 3.6565 -0.7987 -0.4107 39 1 5.1363 0.1666 -0.6263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134387706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:41 Heat of formation + Delta-G solvation = -58.111407 kcal Electronic energy + Delta-G solvation = -20627.129772 eV Core-core repulsion = 17341.565620 eV Total energy + Delta-G solvation = -3285.564152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.68488 -40.43810 -38.13633 -37.33700 -35.64837 -33.67916 -33.26482 -31.59877 -29.34783 -28.39521 -27.75801 -25.76112 -24.24288 -23.21197 -22.42689 -21.51830 -19.46284 -19.18343 -17.69537 -17.24973 -16.90500 -16.85411 -16.63207 -16.55169 -16.37570 -15.40571 -15.36607 -15.09204 -14.69709 -14.61648 -14.21319 -14.12682 -13.28624 -13.22653 -13.07591 -13.04502 -13.03809 -12.69498 -12.62419 -12.48072 -12.04168 -12.01359 -11.89909 -11.84012 -11.00544 -10.76765 -10.27459 -9.84612 -9.17378 -9.06623 -7.96650 -5.28157 -0.23196 0.37144 1.48934 1.50490 1.60546 1.79394 1.92340 2.42529 2.59030 2.77410 3.37777 3.60482 3.75250 3.94037 4.00688 4.06414 4.15152 4.21636 4.22007 4.43474 4.44580 4.48336 4.58349 4.69683 4.76239 4.78847 4.81771 5.00345 5.12961 5.19875 5.23119 5.34146 5.36392 5.46638 5.50257 5.68489 6.24143 6.39619 6.48420 7.14549 7.30344 8.01979 8.25015 9.27299 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047059 B = 0.002716 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.856552 B =10307.008664 C =10864.798355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.107 3.893 4 C -0.174 4.174 5 C -0.087 4.087 6 C -0.118 4.118 7 C -0.118 4.118 8 C 0.551 3.449 9 O -0.568 6.568 10 N -0.704 5.704 11 C 0.128 3.872 12 C 0.149 3.851 13 N -0.747 5.747 14 C -0.246 4.246 15 H 0.084 0.916 16 C -0.079 4.079 17 N -0.971 5.971 18 Si 0.980 3.020 19 H -0.261 1.261 20 H -0.294 1.294 21 H -0.294 1.294 22 C -0.084 4.084 23 C -0.103 4.103 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.152 0.848 30 H 0.415 0.585 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.374 0.626 36 H 0.252 0.748 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.115 -6.096 0.350 30.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.061 3.939 4 C -0.192 4.192 5 C -0.104 4.104 6 C -0.137 4.137 7 C -0.121 4.121 8 C 0.339 3.661 9 O -0.448 6.448 10 N -0.357 5.357 11 C 0.004 3.996 12 C 0.022 3.978 13 N -0.391 5.391 14 C -0.377 4.377 15 H 0.102 0.898 16 C -0.271 4.271 17 N -0.622 5.622 18 Si 0.808 3.192 19 H -0.185 1.185 20 H -0.221 1.221 21 H -0.221 1.221 22 C -0.085 4.085 23 C -0.159 4.159 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.134 0.866 27 H 0.181 0.819 28 H 0.186 0.814 29 H 0.169 0.831 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.205 0.795 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -29.566 -6.790 0.405 30.338 hybrid contribution 0.873 0.629 -0.033 1.076 sum -28.693 -6.162 0.372 29.350 Atomic orbital electron populations 1.23396 0.76123 1.05681 1.02574 1.86069 1.23619 1.26360 1.88694 1.18764 0.90964 0.85725 0.98420 1.21804 1.01724 0.91491 1.04222 1.21293 0.93754 0.98480 0.96922 1.21528 0.94899 0.97246 0.99986 1.19501 0.91427 0.94359 1.06827 1.18630 0.88279 0.83043 0.76104 1.90732 1.67312 1.35818 1.50973 1.45621 1.07064 1.09351 1.73673 1.21188 0.79717 0.97441 1.01284 1.20852 0.84530 0.93069 0.99328 1.42440 1.01307 1.06569 1.88771 1.19693 0.90083 0.87099 1.40844 0.89771 1.25692 0.97171 1.00854 1.03406 1.69842 1.04930 1.28545 1.58868 0.84984 0.78347 0.79241 0.76605 1.18496 1.22090 1.22102 1.19423 0.91810 0.95324 1.01972 1.20716 0.99028 0.93825 1.02372 0.91272 0.91246 0.86611 0.81901 0.81384 0.83082 0.74642 0.92611 0.92651 0.94325 0.94262 0.79456 0.93917 0.92087 0.91383 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.22 9.43 -92.54 -0.87 -7.09 16 3 C 0.11 2.17 6.65 22.47 0.15 2.32 16 4 C -0.17 -2.39 9.03 22.42 0.20 -2.19 16 5 C -0.09 -1.09 10.03 22.22 0.22 -0.87 16 6 C -0.12 -2.02 9.52 22.53 0.21 -1.80 16 7 C -0.12 -2.96 5.87 -20.10 -0.12 -3.07 16 8 C 0.55 17.09 7.70 86.79 0.67 17.76 16 9 O -0.57 -21.94 13.36 -3.87 -0.05 -21.99 16 10 N -0.70 -19.60 5.51 -465.95 -2.57 -22.16 16 11 C 0.13 4.50 5.79 86.38 0.50 5.00 16 12 C 0.15 5.70 6.37 86.38 0.55 6.25 16 13 N -0.75 -38.22 5.60 -343.43 -1.92 -40.14 16 14 C -0.25 -13.60 9.99 84.03 0.84 -12.76 16 15 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 16 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 17 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 18 Si 0.98 45.85 29.55 68.60 2.03 47.87 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 22 C -0.08 -2.16 5.93 -19.50 -0.12 -2.28 16 23 C -0.10 -2.90 8.56 71.24 0.61 -2.29 16 24 H 0.07 0.39 7.66 -2.38 -0.02 0.37 16 25 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 26 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.16 1.12 6.28 -2.91 -0.02 1.11 16 28 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 29 H 0.15 1.83 6.45 -2.91 -0.02 1.81 16 30 H 0.42 8.54 6.54 -92.71 -0.61 7.94 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.37 20.72 7.67 -92.71 -0.71 20.01 16 36 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 1.71 7.33 -2.39 -0.02 1.69 16 39 H 0.07 2.31 5.89 -2.39 -0.01 2.30 16 Total: -1.00 -74.52 327.10 1.96 -72.56 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.24 Total: 27.78 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 5.30 Total: 3.21 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -4.21 Total: -122.34 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.92 Total: -29.08 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -74.52 1.96 -72.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134387706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.445 kcal (2) G-P(sol) polarization free energy of solvation -74.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds