Wall clock time and date at job start Mon Mar 30 2020 23:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35648 * 117.00336 * 2 1 4 4 C 1.38714 * 120.14822 * 359.72758 * 3 2 1 5 5 C 1.38060 * 120.08301 * 179.76494 * 4 3 2 6 6 C 1.50693 * 119.80517 * 180.23043 * 5 4 3 7 7 C 1.38547 * 120.38964 * 0.51417 * 5 4 3 8 8 C 1.37788 * 120.30159 * 359.74111 * 7 5 4 9 9 C 1.39709 * 119.90887 * 0.02562 * 8 7 5 10 10 C 1.47529 * 120.19488 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00262 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99721 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99831 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47042 * 180.02562 * 13 12 10 15 15 N 1.46493 * 109.47143 * 179.97438 * 14 13 12 16 16 C 1.36938 * 120.00134 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00296 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00192 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99682 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99939 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47329 * 90.00396 * 20 18 16 22 22 H 1.48503 * 109.46912 * 210.00171 * 20 18 16 23 23 H 1.48496 * 109.47058 * 329.99908 * 20 18 16 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99686 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99807 * 1 2 3 27 27 H 1.07999 * 119.95750 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.47583 * 270.27928 * 6 5 4 29 29 H 1.09007 * 109.47212 * 30.27799 * 6 5 4 30 30 H 1.08998 * 109.47200 * 150.27773 * 6 5 4 31 31 H 1.08000 * 119.84772 * 179.72190 * 7 5 4 32 32 H 1.08003 * 120.04940 * 179.97438 * 8 7 5 33 33 H 0.96992 * 120.00329 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.46479 * 299.99711 * 13 12 10 35 35 H 1.08995 * 109.47711 * 59.99541 * 13 12 10 36 36 H 1.08998 * 109.46680 * 299.99461 * 14 13 12 37 37 H 1.09002 * 109.47579 * 59.99476 * 14 13 12 38 38 H 0.97001 * 120.00329 * 359.97438 * 15 14 13 39 39 H 0.97006 * 119.99640 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3739 -0.0057 5 6 1.9208 3.6033 -0.0008 6 6 1.0972 4.8653 -0.0018 7 6 3.3039 3.6836 -0.0009 8 6 4.0669 2.5363 -0.0005 9 6 3.4442 1.2856 -0.0006 10 6 4.2550 0.0531 -0.0007 11 8 3.7094 -1.0336 -0.0013 12 7 5.6005 0.1316 -0.0003 13 6 6.4057 -1.0923 -0.0010 14 6 7.8911 -0.7256 0.0003 15 7 8.6962 -1.9494 0.0002 16 6 10.0633 -1.8697 0.0007 17 1 10.5479 -0.9046 0.0017 18 6 10.8262 -3.0294 0.0012 19 7 10.2356 -4.2056 0.0005 20 14 12.6910 -2.9205 0.0026 21 1 13.1841 -2.8919 1.4030 22 1 13.2564 -4.1020 -0.6972 23 1 13.1150 -1.6811 -0.6969 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2139 2.3195 -0.0097 28 1 0.8986 5.1689 -1.0297 29 1 0.1532 4.6836 0.5122 30 1 1.6439 5.6563 0.5115 31 1 3.7862 4.6499 -0.0016 32 1 5.1448 2.6036 -0.0010 33 1 6.0357 0.9984 0.0005 34 1 6.1758 -1.6789 0.8885 35 1 6.1764 -1.6777 -0.8914 36 1 8.1212 -0.1388 -0.8890 37 1 8.1201 -0.1405 0.8910 38 1 8.2610 -2.8163 -0.0003 39 1 10.7688 -5.0160 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148456263.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:48 Heat of formation + Delta-G solvation = -38.176985 kcal Electronic energy + Delta-G solvation = -20638.114572 eV Core-core repulsion = 17353.414841 eV Total energy + Delta-G solvation = -3284.699731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71673 -38.89353 -37.77591 -35.56718 -33.84278 -33.03472 -31.12622 -30.40682 -28.47665 -27.87995 -26.63065 -23.71111 -22.73760 -22.20358 -21.38288 -20.33019 -18.29019 -17.29359 -16.99560 -16.52798 -16.00237 -15.30779 -15.11203 -14.88874 -14.61146 -14.49613 -14.05722 -13.98026 -13.60557 -13.41706 -13.13177 -12.77283 -12.62278 -12.39169 -12.36764 -11.75120 -11.41918 -11.35780 -11.17789 -11.05418 -10.79074 -10.76257 -10.09377 -9.80342 -9.58005 -9.16318 -8.93100 -8.73771 -8.38777 -6.96005 -5.76604 -3.07118 0.66436 1.15511 2.89792 3.07100 3.34318 3.44425 3.49492 3.51338 3.74631 4.34358 4.43841 4.60343 4.71947 4.79839 4.87537 4.92492 5.01306 5.18040 5.19709 5.27677 5.31102 5.38094 5.53751 5.57728 5.70501 5.85149 5.90429 5.98441 6.02396 6.20689 6.22361 6.43714 6.57285 6.76294 6.83222 7.17615 7.68554 7.74999 8.40907 8.48724 9.52277 10.07715 10.42560 11.46088 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.002910 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.562802 B = 9620.261725 C =10448.773125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.278 6.278 3 C 0.188 3.812 4 C -0.224 4.224 5 C -0.025 4.025 6 C -0.119 4.119 7 C -0.169 4.169 8 C -0.043 4.043 9 C -0.173 4.173 10 C 0.555 3.445 11 O -0.521 6.521 12 N -0.723 5.723 13 C 0.113 3.887 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.133 0.867 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.396 0.604 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.386 0.614 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.550 18.994 -0.055 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.189 6.189 3 C 0.139 3.861 4 C -0.242 4.242 5 C -0.025 4.025 6 C -0.176 4.176 7 C -0.187 4.187 8 C -0.062 4.062 9 C -0.177 4.177 10 C 0.342 3.658 11 O -0.398 6.398 12 N -0.375 5.375 13 C -0.011 4.011 14 C 0.016 3.984 15 N -0.375 5.375 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 H 0.121 0.879 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.151 0.849 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.231 0.769 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.220 0.780 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.685 18.017 -0.063 28.194 hybrid contribution 0.900 0.296 0.009 0.947 sum -20.786 18.313 -0.054 27.702 Atomic orbital electron populations 1.23160 0.78887 1.04350 1.01002 1.86413 1.20618 1.25332 1.86513 1.19040 0.90995 0.84819 0.91236 1.21081 1.00120 0.91479 1.11554 1.19872 0.94056 0.94576 0.93996 1.20879 0.99409 0.94512 1.02755 1.20863 0.93005 0.98569 1.06246 1.21204 1.00042 0.90718 0.94217 1.19424 0.90869 0.94238 1.13187 1.17941 0.82005 0.88568 0.77281 1.90826 1.71585 1.28659 1.48717 1.45828 1.05769 1.10290 1.75649 1.21559 0.90969 0.85929 1.02608 1.20757 0.87771 0.91462 0.98361 1.42195 1.03101 1.02510 1.89665 1.19197 0.82184 0.92722 1.43299 0.91036 1.24784 0.98155 0.95223 1.02754 1.69674 1.34326 0.96636 1.57274 0.86145 0.85344 0.76876 0.77529 1.21646 1.21706 1.20715 0.87929 0.92697 0.92689 0.84925 0.90588 0.91338 0.90973 0.85254 0.84725 0.76932 0.91262 0.91254 0.95804 0.95812 0.77980 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.28 -3.88 8.57 -40.52 -0.35 -4.22 16 3 C 0.19 2.42 6.70 -38.69 -0.26 2.16 16 4 C -0.22 -2.14 8.67 -39.47 -0.34 -2.48 16 5 C -0.02 -0.21 5.88 -104.58 -0.62 -0.82 16 6 C -0.12 -0.62 10.00 36.00 0.36 -0.26 16 7 C -0.17 -1.44 9.67 -39.63 -0.38 -1.82 16 8 C -0.04 -0.44 9.54 -39.20 -0.37 -0.81 16 9 C -0.17 -2.34 5.89 -104.85 -0.62 -2.96 16 10 C 0.56 9.28 7.76 -12.47 -0.10 9.18 16 11 O -0.52 -10.77 15.16 -16.59 -0.25 -11.02 16 12 N -0.72 -10.99 5.51 -61.35 -0.34 -11.33 16 13 C 0.11 2.07 5.79 -4.04 -0.02 2.05 16 14 C 0.14 2.93 6.37 -4.05 -0.03 2.90 16 15 N -0.73 -18.99 5.60 -59.91 -0.34 -19.33 16 16 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 26 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 27 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.30 8.08 -51.92 -0.42 -0.12 16 30 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.14 1.07 6.40 -52.48 -0.34 0.73 16 33 H 0.40 4.74 6.50 -40.82 -0.27 4.48 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.39 10.65 7.67 -40.82 -0.31 10.34 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -35.64 331.76 -7.59 -43.23 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.39 Total: 7.34 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -1.63 Total: 0.78 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.05 Total: -58.63 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.60 Total: -15.25 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.64 -7.59 -43.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148456263.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.052 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds