Wall clock time and date at job start Mon Mar 30 2020 23:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35648 * 117.00336 * 2 1 4 4 C 1.38714 * 120.14822 * 359.72758 * 3 2 1 5 5 C 1.38060 * 120.08301 * 179.76494 * 4 3 2 6 6 C 1.50693 * 119.80517 * 180.23043 * 5 4 3 7 7 C 1.38547 * 120.38964 * 0.51417 * 5 4 3 8 8 C 1.37788 * 120.30159 * 359.74111 * 7 5 4 9 9 C 1.39709 * 119.90887 * 0.02562 * 8 7 5 10 10 C 1.47529 * 120.19488 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00262 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99721 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99831 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47042 * 180.02562 * 13 12 10 15 15 N 1.46493 * 109.47143 * 179.97438 * 14 13 12 16 16 C 1.36938 * 120.00134 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00296 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00192 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99682 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99939 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47329 * 90.00396 * 20 18 16 22 22 H 1.48503 * 109.46912 * 210.00171 * 20 18 16 23 23 H 1.48496 * 109.47058 * 329.99908 * 20 18 16 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99686 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99807 * 1 2 3 27 27 H 1.07999 * 119.95750 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.47583 * 270.27928 * 6 5 4 29 29 H 1.09007 * 109.47212 * 30.27799 * 6 5 4 30 30 H 1.08998 * 109.47200 * 150.27773 * 6 5 4 31 31 H 1.08000 * 119.84772 * 179.72190 * 7 5 4 32 32 H 1.08003 * 120.04940 * 179.97438 * 8 7 5 33 33 H 0.96992 * 120.00329 * 0.02562 * 12 10 9 34 34 H 1.09003 * 109.46479 * 299.99711 * 13 12 10 35 35 H 1.08995 * 109.47711 * 59.99541 * 13 12 10 36 36 H 1.08998 * 109.46680 * 299.99461 * 14 13 12 37 37 H 1.09002 * 109.47579 * 59.99476 * 14 13 12 38 38 H 0.97001 * 120.00329 * 359.97438 * 15 14 13 39 39 H 0.97006 * 119.99640 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3739 -0.0057 5 6 1.9208 3.6033 -0.0008 6 6 1.0972 4.8653 -0.0018 7 6 3.3039 3.6836 -0.0009 8 6 4.0669 2.5363 -0.0005 9 6 3.4442 1.2856 -0.0006 10 6 4.2550 0.0531 -0.0007 11 8 3.7094 -1.0336 -0.0013 12 7 5.6005 0.1316 -0.0003 13 6 6.4057 -1.0923 -0.0010 14 6 7.8911 -0.7256 0.0003 15 7 8.6962 -1.9494 0.0002 16 6 10.0633 -1.8697 0.0007 17 1 10.5479 -0.9046 0.0017 18 6 10.8262 -3.0294 0.0012 19 7 10.2356 -4.2056 0.0005 20 14 12.6910 -2.9205 0.0026 21 1 13.1841 -2.8919 1.4030 22 1 13.2564 -4.1020 -0.6972 23 1 13.1150 -1.6811 -0.6969 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2139 2.3195 -0.0097 28 1 0.8986 5.1689 -1.0297 29 1 0.1532 4.6836 0.5122 30 1 1.6439 5.6563 0.5115 31 1 3.7862 4.6499 -0.0016 32 1 5.1448 2.6036 -0.0010 33 1 6.0357 0.9984 0.0005 34 1 6.1758 -1.6789 0.8885 35 1 6.1764 -1.6777 -0.8914 36 1 8.1212 -0.1388 -0.8890 37 1 8.1201 -0.1405 0.8910 38 1 8.2610 -2.8163 -0.0003 39 1 10.7688 -5.0160 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148456263.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:47 Heat of formation + Delta-G solvation = -63.063498 kcal Electronic energy + Delta-G solvation = -20639.193732 eV Core-core repulsion = 17353.414841 eV Total energy + Delta-G solvation = -3285.778891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.63328 -40.08685 -38.56236 -37.28728 -35.51206 -33.95691 -32.97803 -31.16958 -29.76277 -28.76896 -27.63401 -25.55968 -23.61658 -23.34026 -22.77768 -21.45556 -19.50249 -19.05212 -17.99087 -17.53290 -16.90823 -16.72902 -16.46310 -16.27447 -15.92384 -15.34604 -15.14973 -15.11791 -14.93989 -14.66146 -14.44293 -14.26664 -13.20471 -13.12169 -13.05791 -13.00178 -12.95036 -12.65714 -12.53841 -12.37493 -12.12294 -12.07251 -11.87266 -11.85986 -10.99276 -10.92982 -10.20934 -9.85165 -9.21139 -9.07396 -7.96791 -5.28659 -0.17022 0.40714 1.48433 1.51405 1.59809 1.85561 2.06569 2.34247 2.58275 2.81252 3.37364 3.61706 3.75541 3.91114 4.01605 4.12115 4.15691 4.20608 4.29544 4.32833 4.35115 4.50891 4.56606 4.67791 4.69748 4.82027 4.87600 5.00190 5.12044 5.15309 5.24245 5.29028 5.37009 5.48932 5.54853 5.78542 6.23694 6.38377 6.57368 7.24136 7.29723 8.01131 8.24759 9.27157 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032567 B = 0.002910 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.562802 B = 9620.261725 C =10448.773125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.166 3.834 4 C -0.225 4.225 5 C -0.017 4.017 6 C -0.118 4.118 7 C -0.167 4.167 8 C -0.041 4.041 9 C -0.209 4.209 10 C 0.552 3.448 11 O -0.573 6.573 12 N -0.710 5.710 13 C 0.130 3.870 14 C 0.151 3.849 15 N -0.748 5.748 16 C -0.248 4.248 17 H 0.085 0.915 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.982 3.018 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.264 1.264 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.156 0.844 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.414 0.586 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.373 0.627 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.826 22.718 -0.069 31.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.118 3.882 4 C -0.243 4.243 5 C -0.017 4.017 6 C -0.175 4.175 7 C -0.185 4.185 8 C -0.060 4.060 9 C -0.213 4.213 10 C 0.341 3.659 11 O -0.453 6.453 12 N -0.363 5.363 13 C 0.005 3.995 14 C 0.024 3.976 15 N -0.391 5.391 16 C -0.380 4.380 17 H 0.103 0.897 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.810 3.190 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.189 1.189 24 H 0.125 0.875 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.173 0.827 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.179 0.821 32 H 0.171 0.829 33 H 0.252 0.748 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.205 0.795 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.966 21.837 -0.076 30.974 hybrid contribution 0.844 -0.727 0.014 1.114 sum -21.122 21.111 -0.062 29.863 Atomic orbital electron populations 1.23413 0.76700 1.05300 1.02672 1.86351 1.23194 1.26721 1.86871 1.19381 0.91187 0.85563 0.92063 1.21348 1.01168 0.90809 1.11012 1.20365 0.94549 0.95384 0.91450 1.20975 0.99524 0.93054 1.03897 1.21271 0.93219 0.99183 1.04825 1.21445 1.01207 0.89926 0.93384 1.19359 0.91155 0.93771 1.16984 1.18558 0.82161 0.89273 0.75887 1.90786 1.72479 1.30833 1.51225 1.45602 1.05412 1.10021 1.75308 1.21139 0.90460 0.86939 1.00959 1.20836 0.87815 0.89594 0.99380 1.42441 1.03139 1.03745 1.89787 1.19673 0.83353 0.93213 1.41714 0.89748 1.25714 1.03111 0.94935 1.03330 1.69852 1.35976 0.97273 1.59181 0.85024 0.79396 0.77094 0.77516 1.21225 1.22308 1.18896 0.87532 0.90938 0.90934 0.82681 0.89312 0.90267 0.89491 0.82131 0.82861 0.74834 0.93045 0.93026 0.94273 0.94280 0.79512 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -9.25 8.57 -68.71 -0.59 -9.84 16 3 C 0.17 4.28 6.70 22.85 0.15 4.43 16 4 C -0.22 -3.87 8.67 22.34 0.19 -3.68 16 5 C -0.02 -0.23 5.88 -19.84 -0.12 -0.35 16 6 C -0.12 -0.73 10.00 71.23 0.71 -0.02 16 7 C -0.17 -2.29 9.67 22.24 0.22 -2.08 16 8 C -0.04 -0.76 9.54 22.52 0.21 -0.54 16 9 C -0.21 -5.65 5.89 -20.01 -0.12 -5.77 16 10 C 0.55 19.11 7.76 86.69 0.67 19.78 16 11 O -0.57 -25.17 15.16 16.91 0.26 -24.91 16 12 N -0.71 -21.73 5.51 -466.26 -2.57 -24.29 16 13 C 0.13 4.89 5.79 86.38 0.50 5.39 16 14 C 0.15 6.02 6.37 86.38 0.55 6.57 16 15 N -0.75 -39.32 5.60 -343.47 -1.92 -41.24 16 16 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 19 N -0.97 -61.21 13.06 21.65 0.28 -60.92 16 20 Si 0.98 46.34 29.55 68.60 2.03 48.36 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16 26 H 0.07 0.90 7.67 -2.38 -0.02 0.88 16 27 H 0.16 1.82 6.30 -2.91 -0.02 1.80 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 0.37 8.08 -2.38 -0.02 0.35 16 30 H 0.09 0.33 8.08 -2.39 -0.02 0.31 16 31 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.15 2.05 6.40 -2.91 -0.02 2.03 16 33 H 0.41 9.43 6.50 -92.71 -0.60 8.82 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.37 21.27 7.67 -92.71 -0.71 20.56 16 39 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -79.66 331.76 2.64 -77.02 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.24 Total: 28.04 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.40 Total: 7.79 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -4.21 Total: -126.46 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.33 Total: -34.75 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -79.66 2.64 -77.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148456263.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.954 kcal (2) G-P(sol) polarization free energy of solvation -79.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds