Wall clock time and date at job start Mon Mar 30 2020 23:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38163 * 120.02715 * 2 1 4 4 C 1.38243 * 120.05438 * 179.97438 * 3 2 1 5 5 C 1.38289 * 120.11362 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.05159 * 0.02562 * 5 4 3 7 7 C 1.38708 * 120.02785 * 179.97438 * 2 1 3 8 8 O 1.35899 * 120.05461 * 359.97438 * 7 2 1 9 9 C 1.42903 * 116.99930 * 180.02562 * 8 7 2 10 10 C 1.50697 * 109.47103 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00301 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00282 * 179.97438 * 10 9 8 13 13 C 1.46491 * 120.00452 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47388 * 180.02562 * 13 12 10 15 15 N 1.46493 * 109.47001 * 180.02562 * 14 13 12 16 16 C 1.36943 * 119.99788 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99916 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99996 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00088 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47428 * 59.99822 * 20 18 16 22 22 H 1.48499 * 109.47250 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47042 * 299.99512 * 20 18 16 24 24 H 1.08998 * 109.47128 * 270.02582 * 1 2 3 25 25 H 1.08999 * 109.46873 * 30.02607 * 1 2 3 26 26 H 1.09000 * 109.47139 * 150.02308 * 1 2 3 27 27 H 1.08001 * 119.97024 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.94070 * 180.02562 * 4 3 2 29 29 H 1.07993 * 119.96940 * 180.28495 * 5 4 3 30 30 H 1.08000 * 120.02364 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47294 * 300.00489 * 9 8 7 32 32 H 1.08995 * 109.47056 * 60.00501 * 9 8 7 33 33 H 0.97006 * 119.99509 * 0.02562 * 12 10 9 34 34 H 1.09007 * 109.47057 * 300.00179 * 13 12 10 35 35 H 1.08998 * 109.47327 * 60.00342 * 13 12 10 36 36 H 1.08993 * 109.46603 * 299.99963 * 14 13 12 37 37 H 1.08998 * 109.46923 * 59.99708 * 14 13 12 38 38 H 0.96997 * 120.00644 * 0.02562 * 15 14 13 39 39 H 0.96996 * 119.99546 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2753 0.0009 0.0016 6 6 3.5887 -1.1976 0.0016 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3788 0.0016 9 6 2.3034 -3.5762 0.0027 10 6 1.3872 -4.7726 0.0031 11 8 0.1846 -4.6155 0.0021 12 7 1.9041 -6.0173 0.0036 13 6 1.0134 -7.1804 0.0034 14 6 1.8486 -8.4624 0.0047 15 7 0.9579 -9.6254 0.0039 16 6 1.4831 -10.8901 0.0054 17 1 2.5540 -11.0301 0.0067 18 6 0.6392 -11.9922 0.0041 19 7 -0.6660 -11.8216 0.0020 20 14 1.3557 -13.7173 0.0054 21 1 2.1901 -13.9059 1.2191 22 1 0.2526 -14.7114 0.0043 23 1 2.1938 -13.9060 -1.2059 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6584 2.1315 -0.0004 28 1 4.1195 2.1330 0.0010 29 1 5.3552 0.0042 0.0067 30 1 4.1314 -2.1313 0.0029 31 1 2.9324 -3.6009 -0.8872 32 1 2.9322 -3.5993 0.8927 33 1 2.8660 -6.1430 0.0040 34 1 0.3841 -7.1562 0.8932 35 1 0.3850 -7.1567 -0.8868 36 1 2.4781 -8.4867 -0.8848 37 1 2.4768 -8.4859 0.8952 38 1 -0.0039 -9.4998 0.0024 39 1 -1.2557 -12.5918 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149703508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:51 Heat of formation + Delta-G solvation = -39.567323 kcal Electronic energy + Delta-G solvation = -20143.879670 eV Core-core repulsion = 16859.119650 eV Total energy + Delta-G solvation = -3284.760020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68743 -39.44862 -37.53360 -35.70906 -33.91666 -33.09400 -31.40679 -30.50333 -29.20910 -27.24083 -26.81002 -23.72643 -22.58594 -21.83150 -21.52732 -20.44130 -18.43322 -17.55314 -17.00083 -16.63411 -16.17541 -15.89234 -15.30718 -15.12263 -14.65455 -14.54715 -14.05087 -13.87381 -13.39767 -13.36470 -13.23138 -12.95707 -12.83306 -12.48925 -12.30705 -11.60867 -11.55526 -11.31409 -11.17565 -11.14814 -10.86568 -10.81902 -10.18105 -9.93535 -9.73813 -9.13715 -9.06350 -8.89943 -8.40422 -7.02878 -5.81962 -3.13233 1.01089 1.14055 2.40713 2.53359 3.41095 3.44471 3.45153 3.46736 3.54640 4.38926 4.48323 4.55876 4.61589 4.70211 4.77028 4.77378 5.00398 5.06766 5.29011 5.41211 5.45567 5.46845 5.54926 5.59633 5.72307 5.90337 6.00876 6.03019 6.08576 6.16820 6.24348 6.38376 6.46989 6.64800 6.66253 7.07267 7.46325 7.62645 8.16557 8.35486 9.46642 10.00866 10.35413 11.40437 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.051215 B = 0.002333 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.579519 B =11998.733449 C =12514.262293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.112 4.112 3 C -0.085 4.085 4 C -0.156 4.156 5 C -0.087 4.087 6 C -0.208 4.208 7 C 0.128 3.872 8 O -0.285 6.285 9 C 0.041 3.959 10 C 0.512 3.488 11 O -0.517 6.517 12 N -0.719 5.719 13 C 0.112 3.888 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.387 0.613 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.375 26.260 0.001 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.113 4.113 3 C -0.103 4.103 4 C -0.175 4.175 5 C -0.105 4.105 6 C -0.226 4.226 7 C 0.083 3.917 8 O -0.197 6.197 9 C -0.037 4.037 10 C 0.296 3.704 11 O -0.392 6.392 12 N -0.372 5.372 13 C -0.011 4.011 14 C 0.017 3.983 15 N -0.375 5.375 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.220 0.780 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.354 26.172 -0.001 27.794 hybrid contribution 0.919 -1.122 0.010 1.450 sum 10.273 25.050 0.010 27.075 Atomic orbital electron populations 1.20654 0.90241 1.03074 1.02583 1.19328 0.96829 0.90186 1.04966 1.20908 0.94147 0.96755 0.98454 1.21050 0.94225 0.98109 1.04067 1.20925 0.99802 0.91844 0.97918 1.21271 0.92826 0.99678 1.08869 1.18902 0.90441 0.85544 0.96836 1.86162 1.34018 1.11197 1.88352 1.22495 0.93883 0.83549 1.03821 1.19924 0.89080 0.83831 0.77597 1.90768 1.15046 1.85686 1.47674 1.45756 1.10856 1.05257 1.75375 1.21628 0.92982 0.83629 1.02853 1.20751 0.93218 0.85863 0.98486 1.42179 1.05187 1.00366 1.89745 1.19138 0.91893 0.82935 1.43748 0.91061 1.24795 0.95358 0.98093 1.02567 1.69659 1.01439 1.29744 1.56961 0.86212 0.77650 0.84080 0.77863 1.21173 1.21591 1.21168 0.91231 0.91733 0.90609 0.85382 0.85947 0.85796 0.85342 0.88953 0.88940 0.76527 0.91040 0.91034 0.95742 0.95732 0.77958 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.79 36.01 0.35 -0.70 16 2 C -0.11 -1.16 5.89 -104.47 -0.62 -1.78 16 3 C -0.08 -0.71 9.70 -39.61 -0.38 -1.09 16 4 C -0.16 -1.19 10.04 -39.56 -0.40 -1.59 16 5 C -0.09 -0.68 10.04 -39.60 -0.40 -1.07 16 6 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 7 C 0.13 1.42 6.66 -39.22 -0.26 1.16 16 8 O -0.29 -3.63 8.72 -39.33 -0.34 -3.97 16 9 C 0.04 0.41 5.22 36.00 0.19 0.60 16 10 C 0.51 7.14 7.91 -10.99 -0.09 7.05 16 11 O -0.52 -9.76 16.50 -14.35 -0.24 -10.00 16 12 N -0.72 -9.17 5.56 -60.29 -0.33 -9.51 16 13 C 0.11 1.87 5.79 -4.04 -0.02 1.85 16 14 C 0.15 2.76 6.37 -4.04 -0.03 2.73 16 15 N -0.73 -18.35 5.60 -59.91 -0.34 -18.69 16 16 C -0.25 -6.82 9.99 -15.06 -0.15 -6.97 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 27 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 28 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 29 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.13 0.86 6.30 -52.49 -0.33 0.52 16 31 H 0.09 0.68 7.66 -51.93 -0.40 0.28 16 32 H 0.09 0.68 7.66 -51.93 -0.40 0.28 16 33 H 0.40 3.69 8.47 -40.82 -0.35 3.34 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.39 10.32 7.67 -40.82 -0.31 10.00 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -34.54 336.65 -8.25 -42.80 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.52 Total: 7.02 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.25 Total: -2.44 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.05 Total: -55.61 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.58 Total: -13.97 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.54 -8.25 -42.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149703508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.229 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds