Wall clock time and date at job start Mon Mar 30 2020 23:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38163 * 120.02715 * 2 1 4 4 C 1.38243 * 120.05438 * 179.97438 * 3 2 1 5 5 C 1.38289 * 120.11362 * 359.97438 * 4 3 2 6 6 C 1.38125 * 120.05159 * 0.02562 * 5 4 3 7 7 C 1.38708 * 120.02785 * 179.97438 * 2 1 3 8 8 O 1.35899 * 120.05461 * 359.97438 * 7 2 1 9 9 C 1.42903 * 116.99930 * 180.02562 * 8 7 2 10 10 C 1.50697 * 109.47103 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00301 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00282 * 179.97438 * 10 9 8 13 13 C 1.46491 * 120.00452 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47388 * 180.02562 * 13 12 10 15 15 N 1.46493 * 109.47001 * 180.02562 * 14 13 12 16 16 C 1.36943 * 119.99788 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99916 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99996 * 180.02562 * 16 15 14 19 19 N 1.31624 * 120.00088 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47428 * 59.99822 * 20 18 16 22 22 H 1.48499 * 109.47250 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47042 * 299.99512 * 20 18 16 24 24 H 1.08998 * 109.47128 * 270.02582 * 1 2 3 25 25 H 1.08999 * 109.46873 * 30.02607 * 1 2 3 26 26 H 1.09000 * 109.47139 * 150.02308 * 1 2 3 27 27 H 1.08001 * 119.97024 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.94070 * 180.02562 * 4 3 2 29 29 H 1.07993 * 119.96940 * 180.28495 * 5 4 3 30 30 H 1.08000 * 120.02364 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47294 * 300.00489 * 9 8 7 32 32 H 1.08995 * 109.47056 * 60.00501 * 9 8 7 33 33 H 0.97006 * 119.99509 * 0.02562 * 12 10 9 34 34 H 1.09007 * 109.47057 * 300.00179 * 13 12 10 35 35 H 1.08998 * 109.47327 * 60.00342 * 13 12 10 36 36 H 1.08993 * 109.46603 * 299.99963 * 14 13 12 37 37 H 1.08998 * 109.46923 * 59.99708 * 14 13 12 38 38 H 0.96997 * 120.00644 * 0.02562 * 15 14 13 39 39 H 0.96996 * 119.99546 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2753 0.0009 0.0016 6 6 3.5887 -1.1976 0.0016 7 6 2.2012 -1.2009 0.0005 8 8 1.5234 -2.3788 0.0016 9 6 2.3034 -3.5762 0.0027 10 6 1.3872 -4.7726 0.0031 11 8 0.1846 -4.6155 0.0021 12 7 1.9041 -6.0173 0.0036 13 6 1.0134 -7.1804 0.0034 14 6 1.8486 -8.4624 0.0047 15 7 0.9579 -9.6254 0.0039 16 6 1.4831 -10.8901 0.0054 17 1 2.5540 -11.0301 0.0067 18 6 0.6392 -11.9922 0.0041 19 7 -0.6660 -11.8216 0.0020 20 14 1.3557 -13.7173 0.0054 21 1 2.1901 -13.9059 1.2191 22 1 0.2526 -14.7114 0.0043 23 1 2.1938 -13.9060 -1.2059 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6584 2.1315 -0.0004 28 1 4.1195 2.1330 0.0010 29 1 5.3552 0.0042 0.0067 30 1 4.1314 -2.1313 0.0029 31 1 2.9324 -3.6009 -0.8872 32 1 2.9322 -3.5993 0.8927 33 1 2.8660 -6.1430 0.0040 34 1 0.3841 -7.1562 0.8932 35 1 0.3850 -7.1567 -0.8868 36 1 2.4781 -8.4867 -0.8848 37 1 2.4768 -8.4859 0.8952 38 1 -0.0039 -9.4998 0.0024 39 1 -1.2557 -12.5918 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149703508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:50 Heat of formation + Delta-G solvation = -63.312951 kcal Electronic energy + Delta-G solvation = -20144.909358 eV Core-core repulsion = 16859.119650 eV Total energy + Delta-G solvation = -3285.789708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.49845 -40.48764 -38.31099 -37.28704 -35.55328 -33.75922 -33.22835 -31.27555 -30.37034 -28.53409 -27.58046 -25.53872 -23.51247 -22.98565 -22.49893 -21.53948 -19.37241 -19.14162 -18.23676 -17.51441 -17.20533 -16.59768 -16.54701 -16.34609 -16.23803 -15.35443 -15.18198 -15.17016 -15.05232 -14.57978 -14.31938 -13.99905 -13.70946 -13.17900 -13.16454 -13.04632 -12.94841 -12.63592 -12.55497 -12.22979 -12.12892 -12.06295 -11.88745 -11.79179 -11.04635 -10.98267 -10.24683 -9.75322 -9.09034 -9.07257 -7.97069 -5.28797 0.39556 0.49507 1.44022 1.45836 1.50538 1.52261 1.58653 2.52076 2.66994 2.82931 3.37078 3.52086 3.84450 3.96211 3.99710 4.01460 4.07782 4.15871 4.21324 4.23575 4.43355 4.44057 4.57031 4.67118 4.76977 4.77981 4.98733 4.99962 5.12227 5.29175 5.31159 5.41434 5.48216 5.53477 5.62724 5.86936 6.23489 6.33323 6.49234 7.11425 7.29631 8.01705 8.23977 9.26385 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.051215 B = 0.002333 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.579519 B =11998.733449 C =12514.262293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C -0.089 4.089 4 C -0.157 4.157 5 C -0.090 4.090 6 C -0.211 4.211 7 C 0.102 3.898 8 O -0.318 6.318 9 C 0.047 3.953 10 C 0.510 3.490 11 O -0.575 6.575 12 N -0.702 5.702 13 C 0.128 3.872 14 C 0.149 3.851 15 N -0.749 5.749 16 C -0.249 4.249 17 H 0.085 0.915 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.981 3.019 21 H -0.275 1.275 22 H -0.298 1.298 23 H -0.275 1.275 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.422 0.578 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.373 0.627 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.745 27.434 0.010 30.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.139 4.139 3 C -0.107 4.107 4 C -0.175 4.175 5 C -0.108 4.108 6 C -0.230 4.230 7 C 0.057 3.943 8 O -0.232 6.232 9 C -0.031 4.031 10 C 0.296 3.704 11 O -0.454 6.454 12 N -0.357 5.357 13 C 0.003 3.997 14 C 0.023 3.977 15 N -0.392 5.392 16 C -0.380 4.380 17 H 0.103 0.897 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.809 3.191 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.200 1.200 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.165 0.835 28 H 0.165 0.835 29 H 0.169 0.831 30 H 0.169 0.831 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.260 0.740 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.205 0.795 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.825 27.380 0.008 30.235 hybrid contribution -0.057 -1.350 0.007 1.351 sum 12.768 26.030 0.016 28.992 Atomic orbital electron populations 1.20600 0.90712 1.02624 1.02282 1.19586 0.96980 0.91107 1.06270 1.21184 0.94871 0.96756 0.97889 1.21437 0.94026 0.99359 1.02718 1.21326 1.01246 0.91433 0.96790 1.21563 0.91923 1.01268 1.08201 1.19176 0.91569 0.84999 0.98581 1.86108 1.35688 1.12301 1.89071 1.22585 0.92632 0.81004 1.06846 1.20715 0.88906 0.84908 0.75862 1.90748 1.17825 1.86513 1.50302 1.45487 1.11500 1.03995 1.74677 1.21177 0.92918 0.84331 1.01230 1.20857 0.92690 0.84652 0.99548 1.42439 1.05382 1.01566 1.89834 1.19623 0.92549 0.84028 1.41809 0.89739 1.25704 0.95746 1.02290 1.03369 1.69837 1.02849 1.30390 1.59082 0.85111 0.76710 0.78914 0.78386 1.20053 1.22431 1.20046 0.91518 0.89895 0.93244 0.83501 0.83454 0.83132 0.83123 0.85701 0.85677 0.73983 0.92818 0.92814 0.94144 0.94130 0.79508 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.79 71.24 0.70 -1.43 16 2 C -0.14 -2.82 5.89 -19.77 -0.12 -2.94 16 3 C -0.09 -1.34 9.70 22.25 0.22 -1.13 16 4 C -0.16 -1.95 10.04 22.28 0.22 -1.73 16 5 C -0.09 -1.11 10.04 22.25 0.22 -0.89 16 6 C -0.21 -3.19 9.04 22.36 0.20 -2.99 16 7 C 0.10 2.16 6.66 22.50 0.15 2.31 16 8 O -0.32 -8.06 8.72 -73.37 -0.64 -8.70 16 9 C 0.05 0.85 5.22 71.24 0.37 1.22 16 10 C 0.51 13.95 7.91 87.66 0.69 14.64 16 11 O -0.58 -22.53 16.50 16.01 0.26 -22.27 16 12 N -0.70 -16.93 5.56 -463.06 -2.57 -19.50 16 13 C 0.13 4.28 5.79 86.38 0.50 4.78 16 14 C 0.15 5.49 6.37 86.38 0.55 6.04 16 15 N -0.75 -37.73 5.60 -343.46 -1.92 -39.65 16 16 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 19 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 20 Si 0.98 45.46 29.55 68.60 2.03 47.49 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 26 H 0.05 1.23 7.53 -2.39 -0.02 1.21 16 27 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 29 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 30 H 0.15 1.43 6.30 -2.91 -0.02 1.41 16 31 H 0.13 1.43 7.66 -2.39 -0.02 1.41 16 32 H 0.13 1.43 7.66 -2.39 -0.02 1.41 16 33 H 0.42 6.53 8.47 -92.70 -0.79 5.75 16 34 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.37 20.48 7.67 -92.71 -0.71 19.77 16 39 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -77.18 336.65 2.03 -75.16 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.43 Total: 26.09 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.02 Total: 1.07 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -4.21 Total: -118.84 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.38 Total: -30.97 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -77.18 2.03 -75.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149703508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.842 kcal (2) G-P(sol) polarization free energy of solvation -77.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds