Wall clock time and date at job start Mon Mar 30 2020 23:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.50691 * 109.47102 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00231 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00000 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00273 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47298 * 179.97438 * 12 11 9 14 14 N 1.46504 * 109.47295 * 180.02562 * 13 12 11 15 15 C 1.36933 * 119.99951 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00434 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99785 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99740 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99797 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47462 * 90.00065 * 19 17 15 21 21 H 1.48501 * 109.46618 * 209.99820 * 19 17 15 22 22 H 1.48498 * 109.47041 * 329.99336 * 19 17 15 23 23 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 24 24 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 27 27 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 29 29 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 30 30 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 31 31 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 32 32 H 0.97001 * 120.00180 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.47009 * 300.00385 * 12 11 9 34 34 H 1.09006 * 109.46365 * 60.00356 * 12 11 9 35 35 H 1.09003 * 109.47401 * 300.00659 * 13 12 11 36 36 H 1.09011 * 109.47009 * 60.00372 * 13 12 11 37 37 H 0.97001 * 119.99560 * 359.97438 * 14 13 12 38 38 H 0.96998 * 119.99548 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.03255 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2707 -3.6866 -0.0185 10 8 5.5334 -4.6495 -0.0236 11 7 7.6071 -3.8613 -0.0190 12 6 8.1691 -5.2142 -0.0249 13 6 9.6968 -5.1319 -0.0248 14 7 10.2588 -6.4849 -0.0314 15 6 11.6166 -6.6623 -0.0320 16 1 12.2733 -5.8049 -0.0280 17 6 12.1490 -7.9443 -0.0377 18 7 13.4542 -8.1148 -0.0387 19 14 11.0132 -9.4273 -0.0453 20 1 10.7131 -9.8138 -1.4473 21 1 11.6746 -10.5607 0.6498 22 1 9.7493 -9.0863 0.6558 23 6 2.1970 -1.1966 -0.0058 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6565 2.1324 -0.0004 28 1 4.1176 2.1381 0.0098 29 1 5.3552 0.0102 0.0002 30 1 6.0278 -1.7576 -0.8990 31 1 6.0280 -1.7669 0.8810 32 1 8.1969 -3.0912 -0.0146 33 1 7.8337 -5.7509 0.8625 34 1 7.8342 -5.7427 -0.9175 35 1 10.0319 -4.5953 -0.9125 36 1 10.0321 -4.6032 0.8675 37 1 9.6690 -7.2550 -0.0346 38 1 13.8262 -9.0106 -0.0423 39 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150880249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:57 Heat of formation + Delta-G solvation = -36.452155 kcal Electronic energy + Delta-G solvation = -19966.607506 eV Core-core repulsion = 16681.982569 eV Total energy + Delta-G solvation = -3284.624937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68198 -39.52990 -37.78526 -35.89577 -34.03679 -32.86664 -31.62192 -30.94393 -29.25479 -27.56353 -27.02242 -23.48284 -22.88754 -21.74439 -21.54539 -20.43337 -18.33377 -17.93740 -17.08524 -16.67824 -16.47743 -16.01242 -15.47715 -15.20554 -14.62246 -14.42216 -14.17035 -13.83180 -13.77850 -13.69892 -13.57688 -12.94381 -12.67089 -12.47108 -12.45324 -11.90647 -11.66482 -11.56011 -11.28937 -11.23814 -11.00870 -10.87901 -10.19308 -9.96220 -9.65634 -9.15940 -9.13709 -8.95179 -8.52508 -7.34558 -5.83336 -3.21164 0.96096 1.11161 2.33074 2.44801 3.36213 3.39891 3.40389 3.42814 3.46862 4.34232 4.43815 4.54590 4.56209 4.61932 4.71751 4.75386 4.88816 4.97894 5.14026 5.23085 5.25231 5.35533 5.39861 5.53134 5.54961 5.59652 5.72910 5.89021 5.96077 6.07272 6.23514 6.25449 6.40169 6.51995 6.53109 7.03572 7.37094 7.89410 8.07553 8.34530 9.11931 9.84269 10.02208 11.34332 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.052877 B = 0.002327 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.404543 B =12030.252349 C =12528.604410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.161 4.161 4 C -0.076 4.076 5 C -0.217 4.217 6 C 0.135 3.865 7 O -0.289 6.289 8 C 0.042 3.958 9 C 0.513 3.487 10 O -0.518 6.518 11 N -0.718 5.718 12 C 0.109 3.891 13 C 0.149 3.851 14 N -0.752 5.752 15 C -0.250 4.250 16 H 0.092 0.908 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.885 3.115 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.151 4.151 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.403 0.597 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.364 0.636 38 H 0.261 0.739 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.240 21.371 0.122 31.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.048 4.048 3 C -0.179 4.179 4 C -0.094 4.094 5 C -0.236 4.236 6 C 0.089 3.911 7 O -0.201 6.201 8 C -0.037 4.037 9 C 0.297 3.703 10 O -0.393 6.393 11 N -0.372 5.372 12 C -0.015 4.015 13 C 0.021 3.979 14 N -0.399 5.399 15 C -0.380 4.380 16 H 0.109 0.891 17 C -0.189 4.189 18 N -0.578 5.578 19 Si 0.715 3.285 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.169 4.169 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.237 0.763 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.197 0.803 38 H 0.071 0.929 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.596 20.486 0.115 31.249 hybrid contribution -0.028 -0.559 0.017 0.559 sum -23.624 19.927 0.132 30.907 Atomic orbital electron populations 1.20824 0.90663 1.03073 1.02663 1.19725 0.96131 0.92198 0.96764 1.20955 0.94198 0.97546 1.05237 1.20930 0.94179 0.97396 0.96873 1.21269 1.00346 0.92235 1.09759 1.19052 0.91883 0.84431 0.95718 1.86169 1.17899 1.27651 1.88388 1.22487 0.80661 0.96561 1.03970 1.19944 0.82712 0.90214 0.77463 1.90766 1.58982 1.41835 1.47723 1.45712 1.05849 1.10208 1.75444 1.21647 0.94971 0.82110 1.02733 1.20730 0.88583 0.89216 0.99388 1.42527 1.04776 1.01209 1.91371 1.18997 0.80907 0.94149 1.43938 0.89068 1.24685 0.95527 0.97119 1.01582 1.69700 1.09506 1.21636 1.56947 0.86539 0.80432 0.83576 0.77961 1.20883 1.21554 1.20168 1.20326 0.90822 0.98851 1.06921 0.90799 0.91257 0.91202 0.85939 0.85665 0.85346 0.88803 0.88815 0.76305 0.91105 0.91095 0.94803 0.94862 0.80344 0.92905 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.05 -0.40 5.88 -104.64 -0.62 -1.01 16 3 C -0.16 -1.21 9.70 -39.56 -0.38 -1.60 16 4 C -0.08 -0.57 10.04 -39.61 -0.40 -0.97 16 5 C -0.22 -1.86 9.04 -39.44 -0.36 -2.21 16 6 C 0.13 1.45 6.69 -39.22 -0.26 1.18 16 7 O -0.29 -3.62 9.67 -39.36 -0.38 -4.00 16 8 C 0.04 0.40 5.22 36.00 0.19 0.59 16 9 C 0.51 6.84 7.91 -10.99 -0.09 6.76 16 10 O -0.52 -9.48 16.50 -14.35 -0.24 -9.72 16 11 N -0.72 -8.60 5.56 -60.30 -0.33 -8.94 16 12 C 0.11 1.69 5.79 -4.04 -0.02 1.66 16 13 C 0.15 2.67 6.37 -4.04 -0.03 2.64 16 14 N -0.75 -17.61 5.41 -59.90 -0.32 -17.93 16 15 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 17 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 18 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 19 Si 0.89 22.08 27.74 -169.99 -4.71 17.37 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 23 C -0.15 -1.51 9.64 -39.43 -0.38 -1.89 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 28 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 29 H 0.13 0.81 6.30 -52.48 -0.33 0.48 16 30 H 0.09 0.64 7.66 -51.93 -0.40 0.25 16 31 H 0.09 0.64 7.66 -51.92 -0.40 0.25 16 32 H 0.40 3.42 8.47 -40.82 -0.35 3.07 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 37 H 0.36 8.40 5.53 -40.82 -0.23 8.17 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -35.47 334.87 -7.92 -43.39 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.51 Total: 5.16 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.24 Total: -2.18 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.12 Total: -55.06 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.62 Total: -13.72 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.47 -7.92 -43.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150880249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.935 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds