Wall clock time and date at job start Mon Mar 30 2020 23:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.50691 * 109.47102 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00231 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00000 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00273 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47298 * 179.97438 * 12 11 9 14 14 N 1.46504 * 109.47295 * 180.02562 * 13 12 11 15 15 C 1.36933 * 119.99951 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00434 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99785 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99740 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99797 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47462 * 90.00065 * 19 17 15 21 21 H 1.48501 * 109.46618 * 209.99820 * 19 17 15 22 22 H 1.48498 * 109.47041 * 329.99336 * 19 17 15 23 23 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 24 24 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 27 27 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 29 29 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 30 30 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 31 31 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 32 32 H 0.97001 * 120.00180 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.47009 * 300.00385 * 12 11 9 34 34 H 1.09006 * 109.46365 * 60.00356 * 12 11 9 35 35 H 1.09003 * 109.47401 * 300.00659 * 13 12 11 36 36 H 1.09011 * 109.47009 * 60.00372 * 13 12 11 37 37 H 0.97001 * 119.99560 * 359.97438 * 14 13 12 38 38 H 0.96998 * 119.99548 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.03255 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2707 -3.6866 -0.0185 10 8 5.5334 -4.6495 -0.0236 11 7 7.6071 -3.8613 -0.0190 12 6 8.1691 -5.2142 -0.0249 13 6 9.6968 -5.1319 -0.0248 14 7 10.2588 -6.4849 -0.0314 15 6 11.6166 -6.6623 -0.0320 16 1 12.2733 -5.8049 -0.0280 17 6 12.1490 -7.9443 -0.0377 18 7 13.4542 -8.1148 -0.0387 19 14 11.0132 -9.4273 -0.0453 20 1 10.7131 -9.8138 -1.4473 21 1 11.6746 -10.5607 0.6498 22 1 9.7493 -9.0863 0.6558 23 6 2.1970 -1.1966 -0.0058 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6565 2.1324 -0.0004 28 1 4.1176 2.1381 0.0098 29 1 5.3552 0.0102 0.0002 30 1 6.0278 -1.7576 -0.8990 31 1 6.0280 -1.7669 0.8810 32 1 8.1969 -3.0912 -0.0146 33 1 7.8337 -5.7509 0.8625 34 1 7.8342 -5.7427 -0.9175 35 1 10.0319 -4.5953 -0.9125 36 1 10.0321 -4.6032 0.8675 37 1 9.6690 -7.2550 -0.0346 38 1 13.8262 -9.0106 -0.0423 39 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150880249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:56 Heat of formation + Delta-G solvation = -61.314216 kcal Electronic energy + Delta-G solvation = -19967.685606 eV Core-core repulsion = 16681.982569 eV Total energy + Delta-G solvation = -3285.703037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47229 -40.48408 -38.52595 -37.43317 -35.59577 -33.52656 -33.40516 -31.77114 -30.44133 -28.59421 -27.71479 -25.21676 -23.50077 -23.19434 -22.49323 -21.41345 -19.86806 -19.05983 -18.14330 -17.51691 -17.33419 -16.84493 -16.61227 -16.35590 -16.14437 -15.65152 -15.15891 -15.12714 -14.96355 -14.60563 -14.43931 -14.19859 -13.64007 -13.46220 -13.30274 -13.01573 -12.92891 -12.72200 -12.63095 -12.43413 -12.09324 -11.94073 -11.84728 -11.82329 -11.07004 -11.04384 -10.25862 -9.73973 -9.36877 -9.17464 -8.05834 -5.41035 0.36733 0.47879 1.38722 1.40195 1.42544 1.44902 1.48552 2.45990 2.58658 2.79950 3.26028 3.47321 3.78907 3.88010 3.93497 3.98354 4.03350 4.07203 4.19400 4.21595 4.37186 4.44743 4.53462 4.55212 4.82905 4.88199 4.97305 5.00146 5.08592 5.24205 5.26702 5.35324 5.49849 5.65982 5.72073 5.83795 6.17106 6.31924 6.47656 7.02478 7.09548 7.77448 7.94277 9.14744 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.052877 B = 0.002327 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.404543 B =12030.252349 C =12528.604410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.055 4.055 3 C -0.165 4.165 4 C -0.078 4.078 5 C -0.220 4.220 6 C 0.111 3.889 7 O -0.323 6.323 8 C 0.046 3.954 9 C 0.511 3.489 10 O -0.575 6.575 11 N -0.702 5.702 12 C 0.123 3.877 13 C 0.150 3.850 14 N -0.760 5.760 15 C -0.237 4.237 16 H 0.066 0.934 17 C -0.061 4.061 18 N -0.979 5.979 19 Si 0.951 3.049 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.255 1.255 23 C -0.177 4.177 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.423 0.577 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.366 0.634 38 H 0.259 0.741 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.685 23.625 0.150 34.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.055 4.055 3 C -0.183 4.183 4 C -0.096 4.096 5 C -0.239 4.239 6 C 0.066 3.934 7 O -0.237 6.237 8 C -0.032 4.032 9 C 0.298 3.702 10 O -0.454 6.454 11 N -0.357 5.357 12 C -0.002 4.002 13 C 0.024 3.976 14 N -0.406 5.406 15 C -0.368 4.368 16 H 0.084 0.916 17 C -0.253 4.253 18 N -0.629 5.629 19 Si 0.779 3.221 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.179 1.179 23 C -0.196 4.196 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.261 0.739 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.199 0.801 38 H 0.068 0.932 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -25.063 22.821 0.145 33.896 hybrid contribution 0.413 -1.094 0.005 1.170 sum -24.649 21.726 0.150 32.858 Atomic orbital electron populations 1.20875 0.89146 1.03809 1.03333 1.20035 0.97406 0.91909 0.96179 1.21327 0.94674 0.98098 1.04176 1.21332 0.94409 0.98177 0.95681 1.21554 1.01598 0.91617 1.09114 1.19284 0.92123 0.84685 0.97304 1.86106 1.19288 1.29185 1.89079 1.22611 0.79639 0.93943 1.06971 1.20660 0.82404 0.91326 0.75828 1.90744 1.60284 1.43983 1.50377 1.45477 1.05997 1.09582 1.74668 1.21261 0.93182 0.83890 1.01877 1.20847 0.89961 0.86686 1.00145 1.42568 1.03175 1.03614 1.91283 1.19011 0.82704 0.93275 1.41766 0.91648 1.25487 0.96984 1.00348 1.02446 1.69865 1.11621 1.22137 1.59266 0.85463 0.79071 0.79435 0.78163 1.20412 1.22071 1.17933 1.20500 0.91240 0.99343 1.08474 0.90071 0.89661 0.91357 0.83632 0.82935 0.83029 0.85590 0.85607 0.73932 0.92139 0.92016 0.93675 0.93781 0.80093 0.93208 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.01 71.24 0.71 -0.44 16 2 C -0.06 -0.85 5.88 -19.88 -0.12 -0.96 16 3 C -0.16 -2.07 9.70 22.28 0.22 -1.86 16 4 C -0.08 -0.94 10.04 22.25 0.22 -0.71 16 5 C -0.22 -3.20 9.04 22.36 0.20 -3.00 16 6 C 0.11 2.29 6.69 22.51 0.15 2.44 16 7 O -0.32 -7.93 9.67 -73.48 -0.71 -8.64 16 8 C 0.05 0.77 5.22 71.23 0.37 1.14 16 9 C 0.51 12.94 7.91 87.65 0.69 13.64 16 10 O -0.58 -21.14 16.50 16.01 0.26 -20.87 16 11 N -0.70 -15.28 5.56 -463.07 -2.57 -17.85 16 12 C 0.12 3.61 5.79 86.38 0.50 4.11 16 13 C 0.15 5.10 6.37 86.38 0.55 5.65 16 14 N -0.76 -34.61 5.41 -343.44 -1.86 -36.46 16 15 C -0.24 -13.22 10.47 84.04 0.88 -12.34 16 16 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 17 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 18 N -0.98 -62.02 13.97 21.65 0.30 -61.72 16 19 Si 0.95 45.53 27.74 68.60 1.90 47.43 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 23 C -0.18 -3.59 9.64 22.37 0.22 -3.37 16 24 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 26 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 27 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 28 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 29 H 0.15 1.33 6.30 -2.91 -0.02 1.32 16 30 H 0.13 1.28 7.66 -2.39 -0.02 1.27 16 31 H 0.13 1.28 7.66 -2.38 -0.02 1.27 16 32 H 0.42 5.80 8.47 -92.71 -0.79 5.02 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.37 16.27 5.53 -92.71 -0.51 15.75 16 38 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 39 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -78.81 334.87 2.10 -76.70 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.29 Total: 20.19 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.07 Total: 1.22 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -4.13 Total: -116.03 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.45 Total: -29.52 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Total: -78.81 2.10 -76.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150880249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.390 kcal (2) G-P(sol) polarization free energy of solvation -78.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds