Wall clock time and date at job start Tue Mar 31 2020 00:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38681 * 119.27488 * 2 1 4 4 C 1.38004 * 119.62904 * 180.02562 * 3 2 1 5 5 C 1.40996 * 118.28136 * 0.02562 * 4 3 2 6 6 C 1.41023 * 120.70958 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99958 * 155.10941 * 6 5 4 8 8 C 1.39958 * 119.99513 * 335.11081 * 6 5 4 9 9 N 1.30867 * 119.99699 * 345.49521 * 8 6 5 10 10 Si 1.86801 * 119.99615 * 165.49511 * 8 6 5 11 11 H 1.48500 * 109.46824 * 179.97438 * 10 8 6 12 12 H 1.48496 * 109.47220 * 299.99922 * 10 8 6 13 13 H 1.48498 * 109.47016 * 59.99962 * 10 8 6 14 14 C 1.41711 * 118.59019 * 0.27076 * 5 4 3 15 15 N 1.38087 * 119.90932 * 179.70785 * 14 5 4 16 16 C 1.46494 * 120.00247 * 180.02562 * 15 14 5 17 17 C 1.52995 * 109.47390 * 179.97438 * 16 15 14 18 18 H 1.08997 * 109.52815 * 59.86943 * 17 16 15 19 19 C 1.53150 * 109.52615 * 179.97438 * 17 16 15 20 20 O 1.43078 * 109.14993 * 175.21244 * 19 17 16 21 21 C 1.43076 * 113.59176 * 302.04924 * 20 19 17 22 22 C 1.53140 * 109.15372 * 57.95278 * 21 20 19 23 23 O 1.43073 * 109.52270 * 299.67102 * 17 16 15 24 24 N 1.31969 * 119.27948 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46766 * 89.99652 * 1 2 3 26 26 H 1.08998 * 109.46801 * 209.99735 * 1 2 3 27 27 H 1.08994 * 109.46816 * 330.00006 * 1 2 3 28 28 H 1.08004 * 120.18933 * 0.04621 * 3 2 1 29 29 H 1.08001 * 120.85931 * 180.02562 * 4 3 2 30 30 H 0.97005 * 119.99122 * 180.02562 * 9 8 6 31 31 H 0.97001 * 120.00146 * 359.97438 * 15 14 5 32 32 H 1.08999 * 109.47123 * 299.99832 * 16 15 14 33 33 H 1.09006 * 109.47479 * 59.99307 * 16 15 14 34 34 H 1.08998 * 109.52314 * 295.11748 * 19 17 16 35 35 H 1.09002 * 109.52218 * 55.24994 * 19 17 16 36 36 H 1.09001 * 109.52149 * 177.85984 * 21 20 19 37 37 H 1.09002 * 109.52164 * 298.04918 * 21 20 19 38 38 H 1.08998 * 109.52353 * 64.58928 * 22 21 20 39 39 H 1.08998 * 109.52344 * 184.78241 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 -0.0005 5 6 4.2409 -0.0193 -0.0016 6 6 5.6502 -0.0703 -0.0017 7 1 6.1591 -0.9381 0.3912 8 6 6.3892 1.0036 -0.5109 9 7 5.7987 1.9184 -1.2369 10 14 8.2184 1.1312 -0.1541 11 1 8.7654 2.3500 -0.8026 12 1 8.4321 1.2123 1.3132 13 1 8.9120 -0.0677 -0.6897 14 6 3.4738 -1.2108 -0.0080 15 7 4.1075 -2.4376 -0.0153 16 6 3.3165 -3.6707 -0.0225 17 6 4.2552 -4.8788 -0.0304 18 1 4.8864 -4.8556 0.8579 19 6 3.4294 -6.1686 -0.0372 20 8 4.3106 -7.2894 -0.1574 21 6 5.1301 -7.2504 -1.3295 22 6 5.9558 -5.9607 -1.3227 23 8 5.0750 -4.8396 -1.2022 24 7 2.1525 -1.1511 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6365 2.1399 0.0008 29 1 4.1134 2.1487 -0.0001 30 1 6.3111 2.6625 -1.5901 31 1 5.0764 -2.4831 -0.0165 32 1 2.6880 -3.7043 0.8674 33 1 2.6875 -3.6938 -0.9125 34 1 2.8665 -6.2457 0.8930 35 1 2.7391 -6.1547 -0.8807 36 1 5.7988 -8.1112 -1.3352 37 1 4.4976 -7.2734 -2.2170 38 1 6.6453 -5.9742 -0.4786 39 1 6.5186 -5.8836 -2.2529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157483884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:35 Heat of formation + Delta-G solvation = -62.602845 kcal Electronic energy + Delta-G solvation = -21698.984562 eV Core-core repulsion = 18413.225647 eV Total energy + Delta-G solvation = -3285.758916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.94557 -38.51570 -36.20374 -34.86054 -34.07442 -32.05239 -30.65792 -29.59538 -28.36079 -27.52574 -25.45675 -23.84611 -22.88229 -21.21751 -20.62751 -20.39992 -17.20640 -16.89347 -16.75359 -16.13230 -15.96037 -15.52618 -15.08895 -15.01246 -14.32941 -13.80613 -13.61280 -13.35222 -13.11963 -12.76861 -12.57034 -12.33878 -11.94000 -11.65771 -11.58522 -11.48975 -11.40645 -11.29842 -11.07635 -10.80139 -10.69682 -10.49094 -10.29575 -9.74142 -9.23769 -9.17309 -8.82684 -8.04895 -7.82104 -6.74594 -6.44736 -4.17565 2.75758 3.07221 3.09389 3.14476 3.26694 3.60902 3.67578 3.94989 4.25600 4.67441 4.72009 4.91808 4.96745 5.05325 5.11087 5.25916 5.42957 5.52989 5.65747 5.72764 5.74311 5.88214 6.14345 6.17056 6.31259 6.47183 6.48583 6.59901 6.84753 6.85926 6.97851 7.11945 7.17067 7.26461 7.70669 7.83341 8.05554 8.33059 8.57712 8.70526 8.83205 9.04596 9.82716 10.25206 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.005974 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.601166 B = 4685.944363 C = 6602.114678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.026 3.974 3 C -0.187 4.187 4 C -0.123 4.123 5 C 0.029 3.971 6 C -0.453 4.453 7 H 0.073 0.927 8 C 0.074 3.926 9 N -0.801 5.801 10 Si 0.908 3.092 11 H -0.279 1.279 12 H -0.265 1.265 13 H -0.267 1.267 14 C 0.309 3.691 15 N -0.724 5.724 16 C 0.158 3.842 17 C 0.043 3.957 18 H 0.071 0.929 19 C 0.034 3.966 20 O -0.381 6.381 21 C 0.023 3.977 22 C 0.023 3.977 23 O -0.364 6.364 24 N -0.531 5.531 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.128 0.872 30 H 0.279 0.721 31 H 0.406 0.594 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 -11.454 0.701 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 C -0.210 4.210 4 C -0.149 4.149 5 C 0.022 3.978 6 C -0.484 4.484 7 H 0.091 0.909 8 C -0.142 4.142 9 N -0.427 5.427 10 Si 0.733 3.267 11 H -0.204 1.204 12 H -0.190 1.190 13 H -0.192 1.192 14 C 0.071 3.929 15 N -0.364 5.364 16 C 0.032 3.968 17 C -0.015 4.015 18 H 0.089 0.911 19 C -0.043 4.043 20 O -0.300 6.300 21 C -0.054 4.054 22 C -0.054 4.054 23 O -0.283 6.283 24 N -0.250 5.250 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.146 0.854 30 H 0.090 0.910 31 H 0.243 0.757 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.997 -12.078 0.563 12.132 hybrid contribution 1.802 0.920 -0.068 2.025 sum 0.805 -11.158 0.495 11.198 Atomic orbital electron populations 1.20282 0.91857 1.00622 1.00342 1.19951 0.94244 0.88032 1.08618 1.21224 0.95390 0.96594 1.07743 1.21397 0.92082 0.98321 1.03102 1.17906 0.93881 0.90080 0.95953 1.19102 0.90791 1.02489 1.36045 0.90895 1.25800 1.00751 0.94894 0.92780 1.69797 1.38302 1.10440 1.24197 0.86375 0.82265 0.78429 0.79665 1.20418 1.19012 1.19151 1.18403 0.87900 0.85497 1.01053 1.43525 1.07569 1.00831 1.84476 1.20808 0.92218 0.82186 1.01566 1.23109 0.93419 0.95945 0.89071 0.91137 1.23187 0.92068 0.85480 1.03591 1.88068 1.54232 1.43932 1.43775 1.23258 0.94447 0.98913 0.88742 1.23221 0.92605 0.86444 1.03151 1.88247 1.53579 1.43099 1.43342 1.66326 1.08344 1.29896 1.20417 0.93263 0.92820 0.92954 0.88819 0.85440 0.90986 0.75693 0.91631 0.92454 0.87516 0.91752 0.88052 0.92165 0.92280 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.15 36.01 0.37 -0.99 16 2 C 0.03 0.61 6.79 -82.37 -0.56 0.05 16 3 C -0.19 -4.51 9.69 -39.50 -0.38 -4.89 16 4 C -0.12 -3.24 8.79 -38.62 -0.34 -3.58 16 5 C 0.03 0.77 5.60 -106.47 -0.60 0.17 16 6 C -0.45 -11.76 8.53 -37.88 -0.32 -12.08 16 7 H 0.07 1.79 6.68 -52.49 -0.35 1.44 16 8 C 0.07 1.85 5.23 -17.32 -0.09 1.76 16 9 N -0.80 -20.76 10.83 55.55 0.60 -20.16 16 10 Si 0.91 18.68 29.58 -169.99 -5.03 13.65 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 C 0.31 7.74 7.52 -155.03 -1.17 6.58 16 15 N -0.72 -15.52 5.50 -59.98 -0.33 -15.85 16 16 C 0.16 2.77 5.38 -4.05 -0.02 2.74 16 17 C 0.04 0.62 2.93 -26.66 -0.08 0.55 16 18 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 19 C 0.03 0.42 6.34 37.24 0.24 0.65 16 20 O -0.38 -4.83 10.85 -48.78 -0.53 -5.36 16 21 C 0.02 0.24 7.05 37.23 0.26 0.51 16 22 C 0.02 0.27 7.05 37.23 0.26 0.53 16 23 O -0.36 -5.72 10.25 -48.78 -0.50 -6.22 16 24 N -0.53 -13.02 9.44 -8.11 -0.08 -13.09 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 28 H 0.09 2.01 8.06 -52.48 -0.42 1.59 16 29 H 0.13 3.44 6.17 -52.49 -0.32 3.12 16 30 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 31 H 0.41 8.63 6.56 -40.82 -0.27 8.37 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -29.87 322.22 -9.01 -38.87 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.57 Total: 11.30 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.43 Total: -8.00 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.19 Total: -49.10 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.03 Total: -11.58 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.87 -9.01 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157483884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.728 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds