Wall clock time and date at job start Tue Mar 31 2020 00:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38681 * 119.27488 * 2 1 4 4 C 1.38004 * 119.62904 * 180.02562 * 3 2 1 5 5 C 1.40996 * 118.28136 * 0.02562 * 4 3 2 6 6 C 1.41023 * 120.70958 * 180.02562 * 5 4 3 7 7 H 1.07997 * 119.99958 * 155.10941 * 6 5 4 8 8 C 1.39958 * 119.99513 * 335.11081 * 6 5 4 9 9 N 1.30867 * 119.99699 * 345.49521 * 8 6 5 10 10 Si 1.86801 * 119.99615 * 165.49511 * 8 6 5 11 11 H 1.48500 * 109.46824 * 179.97438 * 10 8 6 12 12 H 1.48496 * 109.47220 * 299.99922 * 10 8 6 13 13 H 1.48498 * 109.47016 * 59.99962 * 10 8 6 14 14 C 1.41711 * 118.59019 * 0.27076 * 5 4 3 15 15 N 1.38087 * 119.90932 * 179.70785 * 14 5 4 16 16 C 1.46494 * 120.00247 * 180.02562 * 15 14 5 17 17 C 1.52995 * 109.47390 * 179.97438 * 16 15 14 18 18 H 1.08997 * 109.52815 * 59.86943 * 17 16 15 19 19 C 1.53150 * 109.52615 * 179.97438 * 17 16 15 20 20 O 1.43078 * 109.14993 * 175.21244 * 19 17 16 21 21 C 1.43076 * 113.59176 * 302.04924 * 20 19 17 22 22 C 1.53140 * 109.15372 * 57.95278 * 21 20 19 23 23 O 1.43073 * 109.52270 * 299.67102 * 17 16 15 24 24 N 1.31969 * 119.27948 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46766 * 89.99652 * 1 2 3 26 26 H 1.08998 * 109.46801 * 209.99735 * 1 2 3 27 27 H 1.08994 * 109.46816 * 330.00006 * 1 2 3 28 28 H 1.08004 * 120.18933 * 0.04621 * 3 2 1 29 29 H 1.08001 * 120.85931 * 180.02562 * 4 3 2 30 30 H 0.97005 * 119.99122 * 180.02562 * 9 8 6 31 31 H 0.97001 * 120.00146 * 359.97438 * 15 14 5 32 32 H 1.08999 * 109.47123 * 299.99832 * 16 15 14 33 33 H 1.09006 * 109.47479 * 59.99307 * 16 15 14 34 34 H 1.08998 * 109.52314 * 295.11748 * 19 17 16 35 35 H 1.09002 * 109.52218 * 55.24994 * 19 17 16 36 36 H 1.09001 * 109.52149 * 177.85984 * 21 20 19 37 37 H 1.09002 * 109.52164 * 298.04918 * 21 20 19 38 38 H 1.08998 * 109.52353 * 64.58928 * 22 21 20 39 39 H 1.08998 * 109.52344 * 184.78241 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 -0.0005 5 6 4.2409 -0.0193 -0.0016 6 6 5.6502 -0.0703 -0.0017 7 1 6.1591 -0.9381 0.3912 8 6 6.3892 1.0036 -0.5109 9 7 5.7987 1.9184 -1.2369 10 14 8.2184 1.1312 -0.1541 11 1 8.7654 2.3500 -0.8026 12 1 8.4321 1.2123 1.3132 13 1 8.9120 -0.0677 -0.6897 14 6 3.4738 -1.2108 -0.0080 15 7 4.1075 -2.4376 -0.0153 16 6 3.3165 -3.6707 -0.0225 17 6 4.2552 -4.8788 -0.0304 18 1 4.8864 -4.8556 0.8579 19 6 3.4294 -6.1686 -0.0372 20 8 4.3106 -7.2894 -0.1574 21 6 5.1301 -7.2504 -1.3295 22 6 5.9558 -5.9607 -1.3227 23 8 5.0750 -4.8396 -1.2022 24 7 2.1525 -1.1511 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6365 2.1399 0.0008 29 1 4.1134 2.1487 -0.0001 30 1 6.3111 2.6625 -1.5901 31 1 5.0764 -2.4831 -0.0165 32 1 2.6880 -3.7043 0.8674 33 1 2.6875 -3.6938 -0.9125 34 1 2.8665 -6.2457 0.8930 35 1 2.7391 -6.1547 -0.8807 36 1 5.7988 -8.1112 -1.3352 37 1 4.4976 -7.2734 -2.2170 38 1 6.6453 -5.9742 -0.4786 39 1 6.5186 -5.8836 -2.2529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157483884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:34 Heat of formation + Delta-G solvation = -81.491867 kcal Electronic energy + Delta-G solvation = -21699.803652 eV Core-core repulsion = 18413.225647 eV Total energy + Delta-G solvation = -3286.578005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01389 -40.32733 -37.34557 -36.36057 -35.93530 -33.40083 -32.46924 -31.12481 -29.67225 -29.12013 -26.77011 -25.49617 -24.14123 -22.64021 -22.40066 -21.90577 -19.12259 -18.07820 -17.98036 -17.40634 -17.31014 -16.90846 -16.59372 -16.11901 -15.77012 -15.56703 -15.20709 -14.70887 -14.51522 -14.24717 -14.12436 -13.78761 -13.37838 -13.24629 -13.16873 -12.98001 -12.78447 -12.68981 -12.52934 -12.37743 -12.15632 -11.71592 -11.62914 -11.31869 -11.09078 -10.59642 -10.19764 -9.95297 -9.74406 -8.61640 -8.28674 -6.11985 0.92390 1.23509 1.38881 1.49292 1.53638 2.22371 2.52978 2.69770 2.81331 2.87161 3.63725 3.78515 3.82843 3.95110 4.04369 4.15097 4.24780 4.33859 4.50971 4.54530 4.59841 4.67653 4.75361 4.76263 4.88701 4.91495 4.99149 5.03224 5.08196 5.20200 5.27359 5.44918 5.81692 5.91416 5.95519 6.06886 6.15490 6.43050 6.77814 6.84054 6.92183 7.15920 7.93826 8.40669 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.005974 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.601166 B = 4685.944363 C = 6602.114678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.023 3.977 3 C -0.201 4.201 4 C -0.144 4.144 5 C -0.008 4.008 6 C -0.479 4.479 7 H 0.077 0.923 8 C 0.032 3.968 9 N -0.835 5.835 10 Si 0.981 3.019 11 H -0.271 1.271 12 H -0.262 1.262 13 H -0.260 1.260 14 C 0.300 3.700 15 N -0.721 5.721 16 C 0.161 3.839 17 C 0.051 3.949 18 H 0.072 0.928 19 C 0.040 3.960 20 O -0.391 6.391 21 C 0.023 3.977 22 C 0.017 3.983 23 O -0.396 6.396 24 N -0.541 5.541 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.285 0.715 31 H 0.404 0.596 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -12.819 0.904 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C -0.224 4.224 4 C -0.171 4.171 5 C -0.015 4.015 6 C -0.510 4.510 7 H 0.095 0.905 8 C -0.181 4.181 9 N -0.462 5.462 10 Si 0.802 3.198 11 H -0.196 1.196 12 H -0.186 1.186 13 H -0.184 1.184 14 C 0.061 3.939 15 N -0.360 5.360 16 C 0.036 3.964 17 C -0.007 4.007 18 H 0.090 0.910 19 C -0.037 4.037 20 O -0.310 6.310 21 C -0.054 4.054 22 C -0.060 4.060 23 O -0.316 6.316 24 N -0.260 5.260 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.241 0.759 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.143 0.857 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.983 -13.481 0.764 13.538 hybrid contribution 1.712 1.305 -0.168 2.159 sum 0.729 -12.175 0.596 12.212 Atomic orbital electron populations 1.20345 0.88087 1.02383 1.01749 1.20817 0.96805 0.87454 1.06105 1.21493 0.94754 0.98158 1.07973 1.21431 0.93298 0.97862 1.04493 1.18267 0.94806 0.90968 0.97409 1.19333 0.91013 1.03517 1.37184 0.90535 1.26657 1.05345 0.94131 0.92013 1.69872 1.40210 1.11110 1.25022 0.85271 0.76354 0.78707 0.79482 1.19605 1.18623 1.18445 1.18698 0.88345 0.86429 1.00394 1.43650 1.07765 1.01099 1.83486 1.20900 0.92550 0.81832 1.01126 1.22984 0.93202 0.95615 0.88928 0.91027 1.23163 0.91665 0.84163 1.04736 1.88061 1.54500 1.43680 1.44780 1.23424 0.94537 0.99220 0.88183 1.23473 0.92411 0.85920 1.04172 1.88189 1.54451 1.45238 1.43681 1.66505 1.07970 1.30395 1.21133 0.91870 0.91802 0.90489 0.86491 0.87005 0.90487 0.75930 0.90942 0.93771 0.85672 0.91533 0.85193 0.91824 0.91915 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.34 10.15 71.24 0.72 -1.62 16 2 C 0.02 1.04 6.79 42.65 0.29 1.33 16 3 C -0.20 -9.74 9.69 22.32 0.22 -9.52 16 4 C -0.14 -7.85 8.79 22.89 0.20 -7.65 16 5 C -0.01 -0.41 5.60 -21.06 -0.12 -0.53 16 6 C -0.48 -25.60 8.53 23.37 0.20 -25.40 16 7 H 0.08 3.86 6.68 -2.91 -0.02 3.84 16 8 C 0.03 1.61 5.23 85.25 0.45 2.05 16 9 N -0.83 -44.45 10.83 21.83 0.24 -44.21 16 10 Si 0.98 38.60 29.58 68.60 2.03 40.63 16 11 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 12 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 13 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 14 C 0.30 15.29 7.52 134.05 1.01 16.30 16 15 N -0.72 -31.37 5.50 -343.67 -1.89 -33.27 16 16 C 0.16 5.59 5.38 86.38 0.46 6.06 16 17 C 0.05 1.44 2.93 30.64 0.09 1.53 16 18 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 19 C 0.04 0.91 6.34 72.03 0.46 1.37 16 20 O -0.39 -9.04 10.85 -136.02 -1.48 -10.52 16 21 C 0.02 0.42 7.05 72.03 0.51 0.93 16 22 C 0.02 0.36 7.05 72.03 0.51 0.87 16 23 O -0.40 -12.20 10.25 -136.02 -1.39 -13.59 16 24 N -0.54 -26.45 9.44 -179.57 -1.70 -28.14 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 28 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 29 H 0.11 6.31 6.17 -2.91 -0.02 6.30 16 30 H 0.28 13.84 8.30 -92.70 -0.77 13.07 16 31 H 0.40 17.57 6.56 -92.71 -0.61 16.96 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -65.34 322.22 1.25 -64.09 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: 0.45 Total: 39.30 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.99 Total: -14.29 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -3.35 Total: -105.62 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -2.87 Total: -24.11 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -65.34 1.25 -64.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157483884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.403 kcal (2) G-P(sol) polarization free energy of solvation -65.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds