Wall clock time and date at job start Tue Mar 31 2020 00:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34775 * 116.99643 * 2 1 4 4 O 1.21520 * 119.99772 * 0.02562 * 3 2 1 5 5 C 1.47287 * 119.99803 * 179.97438 * 3 2 1 6 6 C 1.40031 * 120.61624 * 5.69526 * 5 3 2 7 7 C 1.38306 * 118.36511 * 179.72842 * 6 5 3 8 8 C 1.38397 * 119.51588 * 0.47219 * 7 6 5 9 9 C 1.50700 * 119.38867 * 179.79482 * 8 7 6 10 10 N 1.31849 * 121.22437 * 359.51438 * 8 7 6 11 11 C 1.32420 * 121.78536 * 0.25543 * 10 8 7 12 12 N 1.38222 * 119.83434 * 179.97438 * 11 10 8 13 13 C 1.46508 * 120.00006 * 354.53444 * 12 11 10 14 14 C 1.53005 * 109.47149 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46722 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46866 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00351 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00068 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99768 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00069 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47476 * 89.99581 * 20 18 16 22 22 H 1.48501 * 109.47033 * 209.99423 * 20 18 16 23 23 H 1.48501 * 109.47051 * 329.99190 * 20 18 16 24 24 H 1.09005 * 109.46900 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47617 * 299.99743 * 1 2 3 26 26 H 1.08997 * 109.47462 * 60.00213 * 1 2 3 27 27 H 1.08003 * 120.82025 * 359.97438 * 6 5 3 28 28 H 1.08002 * 120.24713 * 180.24611 * 7 6 5 29 29 H 1.08999 * 109.46607 * 269.72387 * 9 8 7 30 30 H 1.08993 * 109.47089 * 149.72503 * 9 8 7 31 31 H 1.08998 * 109.46459 * 29.72564 * 9 8 7 32 32 H 0.97007 * 120.00520 * 174.53227 * 12 11 10 33 33 H 1.08996 * 109.47050 * 299.99999 * 13 12 11 34 34 H 1.09001 * 109.46771 * 59.99811 * 13 12 11 35 35 H 1.08996 * 109.47337 * 300.00060 * 14 13 12 36 36 H 1.08997 * 109.46555 * 60.00105 * 14 13 12 37 37 H 1.08996 * 109.47449 * 300.00219 * 15 14 13 38 38 H 1.09005 * 109.47253 * 60.00448 * 15 14 13 39 39 H 0.97002 * 119.99866 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2200 0.0005 5 6 3.5346 1.2780 0.0006 6 6 4.3096 0.1178 -0.1185 7 6 5.6869 0.2447 -0.1183 8 6 6.2559 1.5000 0.0081 9 6 7.7569 1.6345 0.0126 10 7 5.5091 2.5809 0.1192 11 6 4.1864 2.5178 0.1202 12 7 3.4428 3.6769 0.2395 13 6 4.1140 4.9559 0.4844 14 6 3.0701 6.0709 0.5735 15 6 3.7711 7.4064 0.8299 16 6 2.7428 8.5045 0.9184 17 1 1.6943 8.2731 0.8028 18 6 3.1407 9.8050 1.1458 19 7 4.4176 10.0869 1.2860 20 14 1.8661 11.1660 1.2561 21 1 1.4240 11.3172 2.6657 22 1 2.4622 12.4419 0.7849 23 1 0.6988 10.8211 0.4055 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.8434 -0.8519 -0.2122 28 1 6.3138 -0.6296 -0.2124 29 1 8.1246 1.5659 1.0364 30 1 8.0364 2.5994 -0.4101 31 1 8.1949 0.8352 -0.5852 32 1 2.4765 3.6435 0.1610 33 1 4.6690 4.9015 1.4209 34 1 4.8022 5.1676 -0.3340 35 1 2.5155 6.1251 -0.3632 36 1 2.3816 5.8593 1.3917 37 1 4.3254 7.3519 1.7668 38 1 4.4598 7.6182 0.0120 39 1 4.6976 11.0017 1.4463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157638204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:25 Heat of formation + Delta-G solvation = -60.581494 kcal Electronic energy + Delta-G solvation = -20888.599017 eV Core-core repulsion = 17602.927754 eV Total energy + Delta-G solvation = -3285.671263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99832 -39.68440 -36.97182 -36.03283 -33.78042 -33.15508 -31.94563 -30.29462 -28.75915 -27.47087 -26.20941 -23.47534 -23.19990 -21.96734 -21.44478 -20.11615 -18.01497 -17.31560 -16.93633 -16.57081 -16.47566 -15.95445 -15.09222 -14.76261 -14.46557 -14.24946 -14.20179 -13.89700 -13.49301 -13.05594 -12.78514 -12.68945 -12.32341 -12.24985 -12.12066 -11.78348 -11.73092 -11.00164 -10.90542 -10.75498 -10.57915 -10.50089 -10.25225 -9.79717 -9.59032 -9.56079 -9.35143 -9.08257 -8.33515 -7.66433 -5.98523 -4.00863 0.59617 1.45594 2.44498 2.54415 3.33622 3.39325 3.41266 3.44843 3.81006 4.28880 4.48106 4.61126 4.70406 4.89812 4.94691 4.99776 5.15986 5.27813 5.37320 5.38968 5.45265 5.49008 5.75003 5.85343 5.85755 5.89100 6.00203 6.16535 6.24861 6.42207 6.67890 6.77564 7.04564 7.34689 7.46396 7.67827 7.70805 7.80963 8.00910 8.33211 8.43185 9.05642 9.62969 11.12862 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.003747 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.644711 B = 7470.549074 C = 9043.718730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.525 3.475 4 O -0.518 6.518 5 C -0.281 4.281 6 C 0.032 3.968 7 C -0.265 4.265 8 C 0.223 3.777 9 C -0.111 4.111 10 N -0.545 5.545 11 C 0.468 3.532 12 N -0.690 5.690 13 C 0.119 3.881 14 C -0.122 4.122 15 C 0.026 3.974 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.143 0.857 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.423 0.577 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -24.733 -3.158 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.373 3.627 4 O -0.408 6.408 5 C -0.291 4.291 6 C 0.006 3.994 7 C -0.288 4.288 8 C 0.079 3.921 9 C -0.168 4.168 10 N -0.264 5.264 11 C 0.226 3.774 12 N -0.326 5.326 13 C -0.004 4.004 14 C -0.161 4.161 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.160 0.840 28 H 0.154 0.846 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.272 0.728 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.958 -23.235 -3.014 23.449 hybrid contribution -1.634 0.054 -0.002 1.635 sum -0.676 -23.181 -3.016 23.386 Atomic orbital electron populations 1.23279 0.75992 1.03602 1.02867 1.86527 1.23542 1.32443 1.84681 1.20850 0.88493 0.81322 0.72074 1.90544 1.66451 1.35450 1.48365 1.19160 0.89615 0.94626 1.25706 1.21532 0.93378 0.97203 0.87244 1.21518 0.94975 0.98493 1.13826 1.21331 0.96506 0.87884 0.86343 1.20849 0.88496 1.04058 1.03439 1.67330 1.03572 1.32274 1.23246 1.18320 0.87934 0.85525 0.85591 1.46024 1.11176 1.04690 1.70732 1.21712 0.96303 0.81183 1.01206 1.21897 0.97401 0.95749 1.01005 1.19013 0.95780 0.89058 0.97286 1.21230 0.93376 0.92310 1.49019 0.92657 1.25021 0.95247 0.98806 0.95365 1.69967 1.14447 1.19565 1.49421 0.86581 0.81627 0.81440 0.78283 1.20669 1.21203 1.19885 0.88082 0.91709 0.91738 0.83964 0.84615 0.89718 0.89921 0.90306 0.72762 0.91799 0.91516 0.92759 0.92807 0.96288 0.96242 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.37 16 2 O -0.36 -4.04 9.90 -40.70 -0.40 -4.44 16 3 C 0.52 7.42 7.88 34.41 0.27 7.69 16 4 O -0.52 -8.50 13.47 -19.28 -0.26 -8.76 16 5 C -0.28 -3.96 5.91 -104.66 -0.62 -4.58 16 6 C 0.03 0.35 9.73 -38.88 -0.38 -0.03 16 7 C -0.27 -2.65 9.70 -39.50 -0.38 -3.03 16 8 C 0.22 2.68 6.78 -82.53 -0.56 2.12 16 9 C -0.11 -0.95 10.16 36.01 0.37 -0.58 16 10 N -0.54 -8.52 9.46 -8.43 -0.08 -8.60 16 11 C 0.47 7.65 7.48 -155.21 -1.16 6.49 16 12 N -0.69 -12.25 5.57 -60.22 -0.34 -12.58 16 13 C 0.12 2.28 5.69 -4.04 -0.02 2.26 16 14 C -0.12 -2.66 5.27 -26.73 -0.14 -2.80 16 15 C 0.03 0.69 4.97 -27.89 -0.14 0.56 16 16 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 20 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 24 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.14 1.15 7.71 -52.48 -0.40 0.75 16 28 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 32 H 0.42 7.63 4.98 -40.91 -0.20 7.42 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -33.08 335.66 -8.06 -41.14 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.64 Total: 2.09 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.11 Total: -4.40 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.32 Total: -47.71 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.66 Total: -13.20 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.08 -8.06 -41.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.446 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds