Wall clock time and date at job start Tue Mar 31 2020 00:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34775 * 116.99643 * 2 1 4 4 O 1.21520 * 119.99772 * 0.02562 * 3 2 1 5 5 C 1.47287 * 119.99803 * 179.97438 * 3 2 1 6 6 C 1.40031 * 120.61624 * 5.69526 * 5 3 2 7 7 C 1.38306 * 118.36511 * 179.72842 * 6 5 3 8 8 C 1.38397 * 119.51588 * 0.47219 * 7 6 5 9 9 C 1.50700 * 119.38867 * 179.79482 * 8 7 6 10 10 N 1.31849 * 121.22437 * 359.51438 * 8 7 6 11 11 C 1.32420 * 121.78536 * 0.25543 * 10 8 7 12 12 N 1.38222 * 119.83434 * 179.97438 * 11 10 8 13 13 C 1.46508 * 120.00006 * 354.53444 * 12 11 10 14 14 C 1.53005 * 109.47149 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46722 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46866 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00351 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00068 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99768 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00069 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47476 * 89.99581 * 20 18 16 22 22 H 1.48501 * 109.47033 * 209.99423 * 20 18 16 23 23 H 1.48501 * 109.47051 * 329.99190 * 20 18 16 24 24 H 1.09005 * 109.46900 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47617 * 299.99743 * 1 2 3 26 26 H 1.08997 * 109.47462 * 60.00213 * 1 2 3 27 27 H 1.08003 * 120.82025 * 359.97438 * 6 5 3 28 28 H 1.08002 * 120.24713 * 180.24611 * 7 6 5 29 29 H 1.08999 * 109.46607 * 269.72387 * 9 8 7 30 30 H 1.08993 * 109.47089 * 149.72503 * 9 8 7 31 31 H 1.08998 * 109.46459 * 29.72564 * 9 8 7 32 32 H 0.97007 * 120.00520 * 174.53227 * 12 11 10 33 33 H 1.08996 * 109.47050 * 299.99999 * 13 12 11 34 34 H 1.09001 * 109.46771 * 59.99811 * 13 12 11 35 35 H 1.08996 * 109.47337 * 300.00060 * 14 13 12 36 36 H 1.08997 * 109.46555 * 60.00105 * 14 13 12 37 37 H 1.08996 * 109.47449 * 300.00219 * 15 14 13 38 38 H 1.09005 * 109.47253 * 60.00448 * 15 14 13 39 39 H 0.97002 * 119.99866 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2200 0.0005 5 6 3.5346 1.2780 0.0006 6 6 4.3096 0.1178 -0.1185 7 6 5.6869 0.2447 -0.1183 8 6 6.2559 1.5000 0.0081 9 6 7.7569 1.6345 0.0126 10 7 5.5091 2.5809 0.1192 11 6 4.1864 2.5178 0.1202 12 7 3.4428 3.6769 0.2395 13 6 4.1140 4.9559 0.4844 14 6 3.0701 6.0709 0.5735 15 6 3.7711 7.4064 0.8299 16 6 2.7428 8.5045 0.9184 17 1 1.6943 8.2731 0.8028 18 6 3.1407 9.8050 1.1458 19 7 4.4176 10.0869 1.2860 20 14 1.8661 11.1660 1.2561 21 1 1.4240 11.3172 2.6657 22 1 2.4622 12.4419 0.7849 23 1 0.6988 10.8211 0.4055 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.8434 -0.8519 -0.2122 28 1 6.3138 -0.6296 -0.2124 29 1 8.1246 1.5659 1.0364 30 1 8.0364 2.5994 -0.4101 31 1 8.1949 0.8352 -0.5852 32 1 2.4765 3.6435 0.1610 33 1 4.6690 4.9015 1.4209 34 1 4.8022 5.1676 -0.3340 35 1 2.5155 6.1251 -0.3632 36 1 2.3816 5.8593 1.3917 37 1 4.3254 7.3519 1.7668 38 1 4.4598 7.6182 0.0120 39 1 4.6976 11.0017 1.4463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:24 Heat of formation + Delta-G solvation = -80.659114 kcal Electronic energy + Delta-G solvation = -20889.469648 eV Core-core repulsion = 17602.927754 eV Total energy + Delta-G solvation = -3286.541894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.02700 -40.67611 -38.11259 -37.30994 -35.60680 -34.21244 -33.59944 -31.67371 -29.60991 -28.72253 -27.62030 -25.16883 -24.12580 -23.20155 -22.74488 -21.74101 -18.98987 -18.57505 -18.27936 -18.08946 -17.49675 -17.23853 -16.52699 -16.50464 -15.68798 -15.49124 -15.31038 -14.91828 -14.37690 -14.34119 -14.02684 -13.93033 -13.72554 -13.49949 -13.21519 -13.00701 -12.88855 -12.77349 -12.60131 -12.39883 -11.87607 -11.83094 -11.67952 -11.54474 -11.23552 -11.17433 -10.72293 -10.58279 -10.48553 -8.82368 -8.22560 -6.34187 -0.38523 0.49628 1.38488 1.40325 1.41990 1.51599 1.63184 2.20158 2.40364 2.81824 3.10430 3.34054 3.73968 3.80361 3.96673 4.14306 4.15245 4.30456 4.32795 4.33317 4.48193 4.51571 4.71137 4.78635 4.85227 4.89274 4.93304 5.03122 5.07431 5.10117 5.22035 5.23702 5.44833 5.62555 5.65031 5.79299 6.08166 6.21764 6.33452 6.65292 6.81055 7.19920 7.34863 8.89541 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.003747 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.644711 B = 7470.549074 C = 9043.718730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.349 6.349 3 C 0.524 3.476 4 O -0.548 6.548 5 C -0.294 4.294 6 C 0.037 3.963 7 C -0.243 4.243 8 C 0.204 3.796 9 C -0.109 4.109 10 N -0.579 5.579 11 C 0.443 3.557 12 N -0.705 5.705 13 C 0.141 3.859 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.547 4.547 17 H 0.059 0.941 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.968 3.032 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.140 0.860 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.176 0.824 28 H 0.180 0.820 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.420 0.580 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.054 0.946 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -27.213 -3.429 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.373 3.627 4 O -0.441 6.441 5 C -0.303 4.303 6 C 0.012 3.988 7 C -0.265 4.265 8 C 0.063 3.937 9 C -0.165 4.165 10 N -0.299 5.299 11 C 0.203 3.797 12 N -0.345 5.345 13 C 0.017 3.983 14 C -0.144 4.144 15 C -0.007 4.007 16 C -0.585 4.585 17 H 0.077 0.923 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.792 3.208 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.189 1.189 24 H 0.158 0.842 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.194 0.806 28 H 0.198 0.802 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.131 0.869 32 H 0.269 0.731 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.708 -25.793 -3.292 26.011 hybrid contribution -1.470 0.641 0.067 1.605 sum -0.762 -25.152 -3.225 25.369 Atomic orbital electron populations 1.23606 0.74255 1.06037 1.02521 1.86513 1.25160 1.30711 1.84009 1.20983 0.88690 0.81642 0.71404 1.90522 1.67099 1.36614 1.49876 1.19338 0.90020 0.94872 1.26071 1.21960 0.93670 0.97336 0.85848 1.22008 0.95079 0.98974 1.10474 1.22046 0.97873 0.88044 0.85724 1.20966 0.86333 1.04590 1.04659 1.67316 1.03673 1.34606 1.24345 1.18560 0.88510 0.85684 0.86908 1.45778 1.10964 1.04546 1.73170 1.21217 0.95059 0.81701 1.00326 1.21613 0.97518 0.94335 1.00894 1.18879 0.95201 0.91361 0.95221 1.21646 0.93958 0.93478 1.49440 0.92324 1.25988 0.97540 1.01572 0.94611 1.70097 1.16592 1.20445 1.49956 0.85409 0.78817 0.77848 0.78740 1.19658 1.20428 1.18908 0.84207 0.92232 0.92022 0.80638 0.80218 0.88603 0.91437 0.86889 0.73143 0.92753 0.92530 0.92685 0.92714 0.98489 0.98455 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.63 16 2 O -0.35 -7.29 9.90 -56.86 -0.56 -7.85 16 3 C 0.52 14.60 7.88 70.20 0.55 15.15 16 4 O -0.55 -18.42 13.47 19.77 0.27 -18.16 16 5 C -0.29 -8.04 5.91 -19.89 -0.12 -8.16 16 6 C 0.04 0.69 9.73 22.72 0.22 0.91 16 7 C -0.24 -3.96 9.70 22.32 0.22 -3.75 16 8 C 0.20 4.56 6.78 42.59 0.29 4.84 16 9 C -0.11 -1.62 10.16 71.24 0.72 -0.89 16 10 N -0.58 -18.29 9.46 -180.58 -1.71 -20.00 16 11 C 0.44 14.76 7.48 133.68 1.00 15.76 16 12 N -0.71 -26.25 5.57 -344.43 -1.92 -28.17 16 13 C 0.14 5.73 5.69 86.38 0.49 6.23 16 14 C -0.11 -4.80 5.27 30.59 0.16 -4.64 16 15 C 0.03 1.73 4.97 29.85 0.15 1.87 16 16 C -0.55 -32.51 9.11 25.60 0.23 -32.28 16 17 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 18 C 0.00 0.05 5.46 84.66 0.46 0.52 16 19 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 20 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.18 2.06 7.71 -2.91 -0.02 2.03 16 28 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.11 0.89 8.07 -2.39 -0.02 0.87 16 32 H 0.42 15.89 4.98 -94.23 -0.47 15.43 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -74.53 335.66 4.55 -69.99 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.58 Total: 17.14 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.58 Total: -2.81 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -3.34 Total: -105.84 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.30 Total: -26.01 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -74.53 4.55 -69.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.672 kcal (2) G-P(sol) polarization free energy of solvation -74.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds