Wall clock time and date at job start Tue Mar 31 2020 00:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34666 * 116.99388 * 2 1 4 4 O 1.21429 * 120.00474 * 0.02562 * 3 2 1 5 5 C 1.48069 * 119.99754 * 180.02562 * 3 2 1 6 6 C 1.40066 * 120.88413 * 0.26341 * 5 3 2 7 7 C 1.37943 * 119.16741 * 180.27848 * 6 5 3 8 8 C 1.50701 * 119.49552 * 179.69899 * 7 6 5 9 9 N 1.31923 * 121.00806 * 359.72623 * 7 6 5 10 10 C 1.32309 * 121.95384 * 359.97438 * 9 7 6 11 11 N 1.39030 * 119.64215 * 179.97438 * 10 9 7 12 12 C 1.46493 * 120.00303 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47025 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47067 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47181 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99929 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00168 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00077 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00450 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46813 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47482 * 119.99957 * 19 17 15 22 22 H 1.48497 * 109.47468 * 240.00204 * 19 17 15 23 23 C 1.39126 * 120.71982 * 359.97438 * 10 9 7 24 24 H 1.09005 * 109.46939 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47392 * 299.99596 * 1 2 3 26 26 H 1.08991 * 109.47721 * 60.00446 * 1 2 3 27 27 H 1.08001 * 120.41375 * 0.02562 * 6 5 3 28 28 H 1.08991 * 109.47248 * 270.02204 * 8 7 6 29 29 H 1.08994 * 109.46742 * 30.02917 * 8 7 6 30 30 H 1.09002 * 109.46988 * 150.02422 * 8 7 6 31 31 H 0.97006 * 119.99371 * 0.02562 * 11 10 9 32 32 H 1.09001 * 109.46888 * 299.99166 * 12 11 10 33 33 H 1.08998 * 109.47398 * 59.99866 * 12 11 10 34 34 H 1.09006 * 109.47075 * 299.99508 * 13 12 11 35 35 H 1.08994 * 109.47357 * 60.00184 * 13 12 11 36 36 H 1.09006 * 109.46729 * 299.99667 * 14 13 12 37 37 H 1.09003 * 109.47322 * 59.99377 * 14 13 12 38 38 H 0.96994 * 120.00548 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.53754 * 179.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1999 0.0000 4 8 1.4019 2.2183 0.0005 5 6 3.5419 1.2775 -0.0006 6 6 4.3229 0.1148 -0.0066 7 6 5.6976 0.2283 -0.0011 8 6 6.5450 -1.0179 -0.0007 9 7 6.2819 1.4111 0.0043 10 6 5.5855 2.5361 0.0043 11 7 6.2511 3.7567 0.0107 12 6 5.4879 5.0072 0.0113 13 6 6.4535 6.1940 0.0195 14 6 5.6565 7.5000 0.0207 15 6 6.6075 8.6689 0.0295 16 1 7.6738 8.4975 0.0341 17 6 6.1164 9.9572 0.0315 18 7 4.8179 10.1660 0.0263 19 14 7.2952 11.4062 0.0416 20 1 8.6936 10.9066 0.0457 21 1 7.0701 12.2361 -1.1692 22 1 7.0592 12.2280 1.2557 23 6 4.1945 2.5109 -0.0022 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 3.8546 -0.8584 -0.0114 28 1 6.7451 -1.3209 1.0270 29 1 6.0155 -1.8174 -0.5188 30 1 7.4874 -0.8166 -0.5101 31 1 7.2208 3.7803 0.0148 32 1 4.8639 5.0523 -0.8813 33 1 4.8563 5.0470 0.8987 34 1 7.0773 6.1487 0.9123 35 1 7.0854 6.1544 -0.8677 36 1 5.0324 7.5455 -0.8718 37 1 5.0247 7.5393 0.9081 38 1 4.4724 11.0723 0.0274 39 1 3.6290 3.4310 -0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157638258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:27 Heat of formation + Delta-G solvation = -82.033196 kcal Electronic energy + Delta-G solvation = -20434.521956 eV Core-core repulsion = 17147.920477 eV Total energy + Delta-G solvation = -3286.601479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.95180 -40.90237 -37.87330 -37.66114 -35.63632 -34.12017 -33.75368 -31.72712 -29.06773 -28.47676 -27.90027 -25.53936 -25.17719 -22.74450 -22.45072 -21.52854 -19.14274 -18.73425 -18.45003 -17.59934 -17.52286 -16.74895 -16.64652 -16.50865 -16.35634 -15.51035 -15.44324 -14.76906 -14.42295 -14.40360 -14.30810 -14.04930 -13.69942 -13.24933 -13.21650 -13.05543 -12.81416 -12.79280 -12.50822 -12.35220 -11.97974 -11.89537 -11.79978 -11.50840 -11.29889 -11.20930 -10.65440 -10.63412 -10.57450 -8.75804 -8.21623 -6.32725 -0.51367 0.23448 1.40029 1.40263 1.42116 1.45297 1.53498 2.06622 2.40862 2.76567 3.12273 3.43905 3.50623 3.85849 3.97066 4.10968 4.16586 4.21161 4.30216 4.31670 4.43643 4.52629 4.56500 4.70796 4.89351 4.90601 4.93053 4.96908 5.06681 5.12929 5.14828 5.19493 5.47887 5.54149 5.68582 5.82158 5.88941 6.21579 6.50265 6.55837 6.84436 7.07306 7.36825 8.90553 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.003132 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.990648 B = 8938.358085 C =10261.983884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.513 3.487 4 O -0.528 6.528 5 C -0.044 4.044 6 C -0.176 4.176 7 C 0.167 3.833 8 C -0.099 4.099 9 N -0.541 5.541 10 C 0.398 3.602 11 N -0.714 5.714 12 C 0.137 3.863 13 C -0.102 4.102 14 C 0.025 3.975 15 C -0.542 4.542 16 H 0.063 0.937 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.261 1.261 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.207 4.207 24 H 0.143 0.857 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.176 0.824 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.411 0.589 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.063 0.937 36 H -0.005 1.005 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 -27.064 -0.053 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.260 6.260 3 C 0.358 3.642 4 O -0.418 6.418 5 C -0.053 4.053 6 C -0.198 4.198 7 C 0.028 3.972 8 C -0.156 4.156 9 N -0.260 5.260 10 C 0.162 3.838 11 N -0.346 5.346 12 C 0.012 3.988 13 C -0.140 4.140 14 C -0.012 4.012 15 C -0.580 4.580 16 H 0.081 0.919 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.233 4.233 24 H 0.161 0.839 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.193 0.807 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.248 0.752 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.072 0.928 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.275 -26.413 -0.050 26.511 hybrid contribution -0.703 1.591 0.014 1.739 sum -2.977 -24.822 -0.036 25.000 Atomic orbital electron populations 1.23682 0.73827 1.06360 1.02704 1.86518 1.25474 1.30577 1.83460 1.21255 0.88959 0.81853 0.72142 1.90858 1.67288 1.37349 1.46338 1.19212 0.89388 0.94686 1.02000 1.22163 0.93797 0.99023 1.04860 1.21636 0.92013 0.92822 0.90750 1.20867 0.99143 0.91051 1.04571 1.66946 1.41238 0.97778 1.20083 1.18235 0.87805 0.86719 0.91087 1.44618 1.09376 1.01313 1.79252 1.21393 0.94615 0.81834 1.00908 1.21567 0.97778 0.92826 1.01836 1.18932 0.95016 0.91971 0.95315 1.21697 0.93800 0.92019 1.50470 0.91889 1.25991 0.96833 1.02373 0.94760 1.70102 1.13685 1.21901 1.51677 0.85385 0.79250 0.78610 0.77718 1.18454 1.20463 1.20454 1.21472 0.93761 0.98674 1.09380 0.83909 0.91915 0.91897 0.80686 0.88687 0.87620 0.90491 0.75220 0.92448 0.92459 0.91823 0.91814 0.98612 0.98617 0.92763 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.34 -6.71 9.92 -55.75 -0.55 -7.26 16 3 C 0.51 13.54 7.92 70.43 0.56 14.10 16 4 O -0.53 -17.48 16.23 20.06 0.33 -17.15 16 5 C -0.04 -1.15 5.90 -19.91 -0.12 -1.27 16 6 C -0.18 -3.49 9.32 22.64 0.21 -3.28 16 7 C 0.17 3.46 6.77 42.48 0.29 3.75 16 8 C -0.10 -1.16 10.16 71.24 0.72 -0.44 16 9 N -0.54 -14.62 10.27 -181.47 -1.86 -16.48 16 10 C 0.40 11.96 7.65 133.08 1.02 12.97 16 11 N -0.71 -21.60 5.73 -345.13 -1.98 -23.58 16 12 C 0.14 4.70 4.89 86.38 0.42 5.12 16 13 C -0.10 -4.03 5.27 30.60 0.16 -3.87 16 14 C 0.03 1.32 4.97 29.85 0.15 1.47 16 15 C -0.54 -30.63 9.11 25.60 0.23 -30.39 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 18 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 19 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.21 -6.31 8.89 22.80 0.20 -6.11 16 24 H 0.14 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.18 2.27 7.71 -2.91 -0.02 2.25 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 0.67 8.07 -2.39 -0.02 0.65 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.41 11.43 8.60 -92.70 -0.80 10.63 16 32 H 0.06 2.02 7.93 -2.39 -0.02 2.01 16 33 H 0.06 2.02 7.93 -2.39 -0.02 2.00 16 34 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 37 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.13 4.35 6.39 -2.91 -0.02 4.34 16 Total: -1.00 -71.11 339.11 4.01 -67.10 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.26 Total: 13.90 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 5.51 Total: -6.03 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -3.56 Total: -96.91 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.23 Total: -24.41 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -71.11 4.01 -67.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157638258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.929 kcal (2) G-P(sol) polarization free energy of solvation -71.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds