Wall clock time and date at job start Tue Mar 31 2020 00:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31486 * 119.81642 * 2 1 4 4 C 1.32747 * 121.73010 * 179.97438 * 3 2 1 5 5 N 1.38367 * 119.42853 * 179.97438 * 4 3 2 6 6 C 1.47439 * 111.00324 * 239.15564 * 5 4 3 7 7 C 1.54320 * 107.23515 * 123.25720 * 6 5 4 8 8 H 1.08996 * 110.70763 * 263.73066 * 7 6 5 9 9 O 1.42895 * 110.70552 * 140.66465 * 7 6 5 10 10 C 1.55441 * 103.04167 * 22.28798 * 7 6 5 11 11 C 1.47849 * 111.00339 * 0.02562 * 5 4 3 12 12 H 1.08999 * 110.37121 * 332.46105 * 11 5 4 13 13 C 1.53005 * 110.37399 * 94.68990 * 11 5 4 14 14 O 1.42892 * 109.46712 * 63.45235 * 13 11 5 15 15 C 1.39706 * 121.14126 * 0.25416 * 4 3 2 16 16 C 1.36566 * 119.48901 * 359.48399 * 15 4 3 17 17 C 1.40758 * 119.81581 * 179.97438 * 2 1 3 18 18 C 1.41199 * 120.56936 * 0.04628 * 17 2 1 19 19 H 1.08004 * 120.00181 * 24.86925 * 18 17 2 20 20 C 1.39875 * 119.99814 * 204.87707 * 18 17 2 21 21 N 1.30895 * 120.00033 * 14.68394 * 20 18 17 22 22 Si 1.86802 * 119.99852 * 194.68773 * 20 18 17 23 23 H 1.48501 * 109.47119 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47037 * 119.99506 * 22 20 18 25 25 H 1.48494 * 109.47243 * 239.99743 * 22 20 18 26 26 H 1.08996 * 109.46900 * 89.99752 * 1 2 3 27 27 H 1.09000 * 109.47138 * 210.00166 * 1 2 3 28 28 H 1.08999 * 109.47114 * 330.00115 * 1 2 3 29 29 H 1.08999 * 109.89115 * 242.66760 * 6 5 4 30 30 H 1.08996 * 109.88622 * 3.69083 * 6 5 4 31 31 H 0.96708 * 113.99939 * 61.45937 * 9 7 6 32 32 H 1.09005 * 111.10148 * 206.29436 * 10 7 6 33 33 H 1.09002 * 111.00089 * 82.39329 * 10 7 6 34 34 H 1.09004 * 109.46621 * 183.44964 * 13 11 5 35 35 H 1.08997 * 109.47106 * 303.44882 * 13 11 5 36 36 H 0.96708 * 113.99905 * 179.97438 * 14 13 11 37 37 H 1.07996 * 120.25388 * 179.72243 * 15 4 3 38 38 H 1.08000 * 120.79115 * 180.24192 * 16 15 4 39 39 H 0.97000 * 119.99667 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4875 1.1851 0.0005 5 7 4.1267 2.4123 -0.0001 6 6 4.9972 2.5542 -1.1816 7 6 4.5457 3.8246 -1.9323 8 1 3.8615 3.5711 -2.7420 9 8 5.6745 4.5434 -2.4333 10 6 3.8183 4.6438 -0.8295 11 6 3.1474 3.5199 -0.0006 12 1 2.2173 3.2038 -0.4729 13 6 2.8824 3.9973 1.4287 14 8 4.0865 4.5301 1.9838 15 6 4.2495 0.0142 -0.0042 16 6 3.6199 -1.1976 0.0012 17 6 2.2069 -1.2213 0.0005 18 6 1.5091 -2.4488 0.0001 19 1 0.5048 -2.4990 -0.3939 20 6 2.1186 -3.5998 0.5102 21 7 3.2000 -3.4988 1.2407 22 14 1.3892 -5.2812 0.1487 23 1 0.1756 -5.1238 -0.6924 24 1 2.3884 -6.1094 -0.5731 25 1 1.0236 -5.9468 1.4248 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 6.0355 2.6587 -0.8668 30 1 4.8916 1.6821 -1.8268 31 1 6.2068 4.0461 -3.0693 32 1 3.0710 5.3085 -1.2630 33 1 4.5315 5.2028 -0.2237 34 1 2.1145 4.7708 1.4169 35 1 2.5431 3.1577 2.0352 36 1 3.9925 4.8530 2.8905 37 1 5.3282 0.0670 -0.0083 38 1 4.1883 -2.1160 0.0016 39 1 3.6228 -4.2971 1.5941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159252706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:17 Heat of formation + Delta-G solvation = -59.042176 kcal Electronic energy + Delta-G solvation = -22158.099638 eV Core-core repulsion = 18872.495124 eV Total energy + Delta-G solvation = -3285.604513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.85493 -37.98073 -36.41829 -35.41448 -33.88464 -31.99383 -30.79510 -29.72047 -28.72575 -26.90959 -25.02957 -24.18018 -21.73395 -21.38080 -19.86268 -19.49242 -17.46201 -17.27189 -16.99216 -16.25873 -15.37890 -15.07860 -14.71406 -14.18010 -13.99136 -13.75290 -13.21974 -13.04384 -12.86820 -12.65900 -12.44144 -12.11659 -11.89998 -11.55721 -11.50775 -11.35784 -11.11385 -11.05616 -10.88201 -10.61104 -10.57401 -10.31201 -9.94257 -9.79228 -9.55849 -9.44864 -8.55906 -8.28019 -8.06075 -7.07538 -6.80584 -4.42409 2.53571 2.89227 3.00188 3.04719 3.08618 3.82602 4.18120 4.43064 4.57984 4.65623 4.88649 5.12144 5.26903 5.50965 5.55142 5.65053 5.70529 5.83258 5.96854 6.02070 6.15497 6.22890 6.28518 6.30273 6.47150 6.58635 6.60871 6.65492 6.79052 6.92283 7.03274 7.29465 7.34025 7.39738 7.70440 7.77674 7.96570 8.01004 8.18412 8.45198 8.66407 8.74875 9.54337 10.05078 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026496 B = 0.004701 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.496488 B = 5955.267575 C = 6248.715930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.017 3.983 3 N -0.494 5.494 4 C 0.161 3.839 5 N -0.441 5.441 6 C 0.021 3.979 7 C 0.082 3.918 8 H 0.061 0.939 9 O -0.562 6.562 10 C -0.114 4.114 11 C 0.081 3.919 12 H 0.097 0.903 13 C 0.100 3.900 14 O -0.561 6.561 15 C -0.149 4.149 16 C -0.116 4.116 17 C 0.056 3.944 18 C -0.444 4.444 19 H 0.084 0.916 20 C 0.072 3.928 21 N -0.793 5.793 22 Si 0.911 3.089 23 H -0.259 1.259 24 H -0.272 1.272 25 H -0.274 1.274 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.375 0.625 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.051 0.949 36 H 0.367 0.633 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 7.824 -2.920 8.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.125 4.125 3 N -0.207 5.207 4 C -0.070 4.070 5 N -0.161 5.161 6 C -0.107 4.107 7 C 0.022 3.978 8 H 0.079 0.921 9 O -0.366 6.366 10 C -0.152 4.152 11 C -0.027 4.027 12 H 0.115 0.885 13 C 0.021 3.979 14 O -0.365 6.365 15 C -0.171 4.171 16 C -0.142 4.142 17 C 0.052 3.948 18 C -0.474 4.474 19 H 0.102 0.898 20 C -0.146 4.146 21 N -0.419 5.419 22 Si 0.735 3.265 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.199 1.199 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.222 0.778 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.212 0.788 37 H 0.117 0.883 38 H 0.148 0.852 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.385 8.780 -2.534 9.146 hybrid contribution -0.132 -2.137 -0.435 2.185 sum 0.252 6.642 -2.969 7.280 Atomic orbital electron populations 1.20238 0.91169 1.01109 1.00193 1.20769 0.94778 0.87761 1.09185 1.66568 1.08340 1.30966 1.14781 1.19031 0.88328 0.89059 1.10564 1.60677 1.18832 1.00315 1.36286 1.23636 0.98849 0.97175 0.90993 1.23179 0.87367 0.91936 0.95281 0.92146 1.86509 1.41532 1.44529 1.64034 1.22740 0.99370 0.97501 0.95609 1.22513 0.96565 0.89232 0.94424 0.88491 1.21928 0.85558 0.96035 0.94336 1.86559 1.34925 1.82766 1.32259 1.20835 0.98454 0.92533 1.05324 1.21384 0.94851 0.96481 1.01531 1.18288 0.92347 0.93133 0.91055 1.19531 1.01386 0.91934 1.34563 0.89802 1.25972 0.94381 1.01637 0.92600 1.69820 1.17135 1.31701 1.23218 0.86205 0.80130 0.80911 0.79221 1.18274 1.19687 1.19881 0.93495 0.91440 0.93428 0.90135 0.92245 0.77835 0.91113 0.88877 0.94186 0.93100 0.78798 0.88280 0.85233 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 9.58 36.01 0.34 -1.06 16 2 C 0.02 0.40 6.86 -81.79 -0.56 -0.16 16 3 N -0.49 -11.53 8.03 -8.04 -0.06 -11.60 16 4 C 0.16 3.67 6.18 -155.13 -0.96 2.71 16 5 N -0.44 -8.79 4.78 -162.46 -0.78 -9.57 16 6 C 0.02 0.36 6.16 -2.84 -0.02 0.35 16 7 C 0.08 1.24 4.33 -24.74 -0.11 1.14 16 8 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 9 O -0.56 -7.75 13.39 -35.23 -0.47 -8.22 16 10 C -0.11 -1.79 6.18 -24.42 -0.15 -1.94 16 11 C 0.08 1.43 2.47 -66.17 -0.16 1.27 16 12 H 0.10 1.85 6.55 -51.93 -0.34 1.51 16 13 C 0.10 1.62 7.00 37.16 0.26 1.88 16 14 O -0.56 -8.80 12.46 -35.23 -0.44 -9.24 16 15 C -0.15 -3.51 8.91 -39.64 -0.35 -3.87 16 16 C -0.12 -2.95 8.73 -39.01 -0.34 -3.29 16 17 C 0.06 1.45 5.59 -106.65 -0.60 0.85 16 18 C -0.44 -11.07 8.16 -37.85 -0.31 -11.38 16 19 H 0.08 1.99 6.84 -52.48 -0.36 1.63 16 20 C 0.07 1.72 5.22 -17.34 -0.09 1.63 16 21 N -0.79 -19.71 10.83 55.54 0.60 -19.11 16 22 Si 0.91 17.78 29.58 -169.99 -5.03 12.75 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.35 6.75 -51.93 -0.35 1.00 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 30 H 0.06 1.04 7.11 -51.93 -0.37 0.67 16 31 H 0.37 3.49 9.11 45.56 0.42 3.90 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.56 7.11 -51.93 -0.37 1.19 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.37 3.96 9.12 45.56 0.42 4.37 16 37 H 0.10 2.16 7.95 -52.49 -0.42 1.74 16 38 H 0.13 3.35 6.17 -52.49 -0.32 3.02 16 39 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -29.59 317.67 -8.22 -37.81 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -3.79 Total: 14.25 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -3.04 Total: -11.87 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.24 Total: -40.27 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.91 Total: -17.46 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.59 -8.22 -37.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159252706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.231 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds