Wall clock time and date at job start Tue Mar 31 2020 00:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31486 * 119.81642 * 2 1 4 4 C 1.32747 * 121.73010 * 179.97438 * 3 2 1 5 5 N 1.38367 * 119.42853 * 179.97438 * 4 3 2 6 6 C 1.47439 * 111.00324 * 239.15564 * 5 4 3 7 7 C 1.54320 * 107.23515 * 123.25720 * 6 5 4 8 8 H 1.08996 * 110.70763 * 263.73066 * 7 6 5 9 9 O 1.42895 * 110.70552 * 140.66465 * 7 6 5 10 10 C 1.55441 * 103.04167 * 22.28798 * 7 6 5 11 11 C 1.47849 * 111.00339 * 0.02562 * 5 4 3 12 12 H 1.08999 * 110.37121 * 332.46105 * 11 5 4 13 13 C 1.53005 * 110.37399 * 94.68990 * 11 5 4 14 14 O 1.42892 * 109.46712 * 63.45235 * 13 11 5 15 15 C 1.39706 * 121.14126 * 0.25416 * 4 3 2 16 16 C 1.36566 * 119.48901 * 359.48399 * 15 4 3 17 17 C 1.40758 * 119.81581 * 179.97438 * 2 1 3 18 18 C 1.41199 * 120.56936 * 0.04628 * 17 2 1 19 19 H 1.08004 * 120.00181 * 24.86925 * 18 17 2 20 20 C 1.39875 * 119.99814 * 204.87707 * 18 17 2 21 21 N 1.30895 * 120.00033 * 14.68394 * 20 18 17 22 22 Si 1.86802 * 119.99852 * 194.68773 * 20 18 17 23 23 H 1.48501 * 109.47119 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47037 * 119.99506 * 22 20 18 25 25 H 1.48494 * 109.47243 * 239.99743 * 22 20 18 26 26 H 1.08996 * 109.46900 * 89.99752 * 1 2 3 27 27 H 1.09000 * 109.47138 * 210.00166 * 1 2 3 28 28 H 1.08999 * 109.47114 * 330.00115 * 1 2 3 29 29 H 1.08999 * 109.89115 * 242.66760 * 6 5 4 30 30 H 1.08996 * 109.88622 * 3.69083 * 6 5 4 31 31 H 0.96708 * 113.99939 * 61.45937 * 9 7 6 32 32 H 1.09005 * 111.10148 * 206.29436 * 10 7 6 33 33 H 1.09002 * 111.00089 * 82.39329 * 10 7 6 34 34 H 1.09004 * 109.46621 * 183.44964 * 13 11 5 35 35 H 1.08997 * 109.47106 * 303.44882 * 13 11 5 36 36 H 0.96708 * 113.99905 * 179.97438 * 14 13 11 37 37 H 1.07996 * 120.25388 * 179.72243 * 15 4 3 38 38 H 1.08000 * 120.79115 * 180.24192 * 16 15 4 39 39 H 0.97000 * 119.99667 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1408 0.0000 4 6 3.4875 1.1851 0.0005 5 7 4.1267 2.4123 -0.0001 6 6 4.9972 2.5542 -1.1816 7 6 4.5457 3.8246 -1.9323 8 1 3.8615 3.5711 -2.7420 9 8 5.6745 4.5434 -2.4333 10 6 3.8183 4.6438 -0.8295 11 6 3.1474 3.5199 -0.0006 12 1 2.2173 3.2038 -0.4729 13 6 2.8824 3.9973 1.4287 14 8 4.0865 4.5301 1.9838 15 6 4.2495 0.0142 -0.0042 16 6 3.6199 -1.1976 0.0012 17 6 2.2069 -1.2213 0.0005 18 6 1.5091 -2.4488 0.0001 19 1 0.5048 -2.4990 -0.3939 20 6 2.1186 -3.5998 0.5102 21 7 3.2000 -3.4988 1.2407 22 14 1.3892 -5.2812 0.1487 23 1 0.1756 -5.1238 -0.6924 24 1 2.3884 -6.1094 -0.5731 25 1 1.0236 -5.9468 1.4248 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 6.0355 2.6587 -0.8668 30 1 4.8916 1.6821 -1.8268 31 1 6.2068 4.0461 -3.0693 32 1 3.0710 5.3085 -1.2630 33 1 4.5315 5.2028 -0.2237 34 1 2.1145 4.7708 1.4169 35 1 2.5431 3.1577 2.0352 36 1 3.9925 4.8530 2.8905 37 1 5.3282 0.0670 -0.0083 38 1 4.1883 -2.1160 0.0016 39 1 3.6228 -4.2971 1.5941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159252706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:16 Heat of formation + Delta-G solvation = -81.778012 kcal Electronic energy + Delta-G solvation = -22159.085537 eV Core-core repulsion = 18872.495124 eV Total energy + Delta-G solvation = -3286.590413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41415 -39.57472 -37.60766 -36.80349 -35.59902 -33.65023 -32.55899 -31.19726 -30.15020 -28.65573 -26.52666 -25.77178 -23.42356 -22.88590 -21.43748 -20.98261 -19.18105 -18.72291 -18.15841 -17.73968 -17.06828 -16.61093 -16.29040 -15.52881 -15.43591 -15.31949 -14.84245 -14.44983 -14.26338 -14.18583 -13.89938 -13.72816 -13.58215 -13.29094 -13.00033 -12.82111 -12.68193 -12.63010 -12.39453 -12.17817 -11.91338 -11.61619 -11.55007 -11.20992 -11.12707 -10.80541 -10.24082 -10.13243 -9.86747 -8.84723 -8.57475 -6.28974 0.74311 1.03358 1.40467 1.49172 1.55337 2.19725 2.65014 2.92134 3.22473 3.44901 3.58161 3.67949 3.84933 4.03155 4.07683 4.30532 4.37705 4.47924 4.55595 4.61218 4.68115 4.70568 4.83078 4.88483 4.96850 4.99469 5.01180 5.05339 5.16105 5.27014 5.35653 5.49699 5.59558 5.75288 5.93903 6.17814 6.37516 6.63679 6.80647 6.82217 6.91507 7.01975 7.70089 8.29740 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026496 B = 0.004701 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.496488 B = 5955.267575 C = 6248.715930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.003 3.997 3 N -0.496 5.496 4 C 0.167 3.833 5 N -0.454 5.454 6 C 0.021 3.979 7 C 0.094 3.906 8 H 0.070 0.930 9 O -0.567 6.567 10 C -0.106 4.106 11 C 0.075 3.925 12 H 0.084 0.916 13 C 0.105 3.895 14 O -0.575 6.575 15 C -0.161 4.161 16 C -0.134 4.134 17 C 0.024 3.976 18 C -0.469 4.469 19 H 0.090 0.910 20 C 0.032 3.968 21 N -0.829 5.829 22 Si 0.985 3.015 23 H -0.253 1.253 24 H -0.268 1.268 25 H -0.268 1.268 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.395 0.605 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.022 0.978 36 H 0.388 0.612 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 8.771 -3.599 9.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 N -0.209 5.209 4 C -0.064 4.064 5 N -0.174 5.174 6 C -0.107 4.107 7 C 0.033 3.967 8 H 0.088 0.912 9 O -0.374 6.374 10 C -0.144 4.144 11 C -0.033 4.033 12 H 0.102 0.898 13 C 0.027 3.973 14 O -0.382 6.382 15 C -0.183 4.183 16 C -0.161 4.161 17 C 0.020 3.980 18 C -0.499 4.499 19 H 0.108 0.892 20 C -0.183 4.183 21 N -0.455 5.455 22 Si 0.805 3.195 23 H -0.176 1.176 24 H -0.193 1.193 25 H -0.193 1.193 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.245 0.755 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.041 0.959 36 H 0.236 0.764 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.223 9.757 -3.213 10.275 hybrid contribution 0.171 -2.283 -0.193 2.298 sum -0.052 7.473 -3.406 8.213 Atomic orbital electron populations 1.20228 0.88741 1.01675 1.01360 1.21365 0.96642 0.87526 1.08272 1.66722 1.08507 1.30530 1.15142 1.19339 0.88341 0.90080 1.08628 1.60630 1.19332 0.99758 1.37728 1.23660 0.98476 0.98262 0.90253 1.22996 0.87864 0.90590 0.95209 0.91234 1.86471 1.41411 1.44767 1.64735 1.22684 0.99601 0.96848 0.95258 1.22610 0.95634 0.89171 0.95835 0.89791 1.21826 0.86452 0.96046 0.93007 1.86497 1.34864 1.82736 1.34115 1.20981 0.99111 0.92541 1.05670 1.21368 0.95209 0.96599 1.02903 1.18645 0.92721 0.94356 0.92294 1.19768 1.01947 0.92543 1.35610 0.89208 1.26828 0.94556 1.05140 0.91758 1.69883 1.18487 1.33055 1.24082 0.85105 0.79400 0.75853 0.79103 1.17577 1.19260 1.19344 0.91897 0.91591 0.92024 0.89798 0.93022 0.75486 0.88745 0.89760 0.91051 0.95921 0.76360 0.87271 0.86632 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.49 9.58 71.24 0.68 -1.81 16 2 C 0.00 0.16 6.86 43.23 0.30 0.45 16 3 N -0.50 -23.20 8.03 -179.36 -1.44 -24.63 16 4 C 0.17 7.68 6.18 133.31 0.82 8.51 16 5 N -0.45 -17.85 4.78 -667.89 -3.19 -21.04 16 6 C 0.02 0.69 6.16 86.65 0.53 1.23 16 7 C 0.09 2.62 4.33 31.88 0.14 2.75 16 8 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 9 O -0.57 -14.07 13.39 -148.98 -2.00 -16.06 16 10 C -0.11 -3.05 6.18 32.09 0.20 -2.85 16 11 C 0.08 2.56 2.47 45.39 0.11 2.67 16 12 H 0.08 3.11 6.55 -2.39 -0.02 3.09 16 13 C 0.11 3.26 7.00 71.98 0.50 3.77 16 14 O -0.58 -17.04 12.46 -148.98 -1.86 -18.90 16 15 C -0.16 -7.76 8.91 22.23 0.20 -7.57 16 16 C -0.13 -7.06 8.73 22.64 0.20 -6.86 16 17 C 0.02 1.28 5.59 -21.18 -0.12 1.16 16 18 C -0.47 -23.74 8.16 23.39 0.19 -23.55 16 19 H 0.09 4.27 6.84 -2.91 -0.02 4.25 16 20 C 0.03 1.53 5.22 85.23 0.45 1.97 16 21 N -0.83 -42.19 10.83 21.82 0.24 -41.96 16 22 Si 0.98 36.39 29.58 68.60 2.03 38.42 16 23 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 24 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 25 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.07 2.62 6.75 -2.39 -0.02 2.61 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.08 2.71 8.06 -2.39 -0.02 2.69 16 30 H 0.05 1.79 7.11 -2.39 -0.02 1.77 16 31 H 0.40 6.26 9.11 -74.05 -0.67 5.58 16 32 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.08 2.61 7.11 -2.39 -0.02 2.60 16 34 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.39 7.64 9.12 -74.05 -0.68 6.97 16 37 H 0.11 4.88 7.95 -2.91 -0.02 4.86 16 38 H 0.12 6.27 6.17 -2.91 -0.02 6.26 16 39 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 Total: -1.00 -63.82 317.67 -2.28 -66.10 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.26 Total: 38.20 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.20 Total: -20.12 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -4.40 Total: -87.63 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -3.85 Total: -34.97 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -63.82 -2.28 -66.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159252706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.678 kcal (2) G-P(sol) polarization free energy of solvation -63.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds