Wall clock time and date at job start Tue Mar 31 2020 00:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 116.99985 * 2 1 4 4 O 1.20818 * 119.99897 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99733 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46905 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.47137 * 305.00590 * 6 5 3 8 8 C 1.52992 * 109.47272 * 184.99814 * 6 5 3 9 9 N 1.46506 * 109.46840 * 65.00115 * 6 5 3 10 10 C 1.38376 * 119.99619 * 205.00045 * 9 6 5 11 11 C 1.39701 * 119.43095 * 359.97438 * 10 9 6 12 12 C 1.36570 * 119.49144 * 180.02562 * 11 10 9 13 13 C 1.41324 * 118.40622 * 359.97438 * 12 11 10 14 14 C 1.41202 * 120.56768 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00179 * 154.75863 * 14 13 12 16 16 C 1.39877 * 119.99954 * 334.75760 * 14 13 12 17 17 N 1.30901 * 119.99809 * 343.69190 * 16 14 13 18 18 Si 1.86803 * 119.99849 * 163.68982 * 16 14 13 19 19 H 1.48501 * 109.47123 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47053 * 120.00090 * 18 16 14 21 21 H 1.48503 * 109.46779 * 239.99811 * 18 16 14 22 22 C 1.40751 * 118.85961 * 0.02562 * 13 12 11 23 23 C 1.50703 * 119.81310 * 179.97438 * 22 13 12 24 24 N 1.31483 * 120.37085 * 359.72323 * 22 13 12 25 25 H 1.09004 * 109.46680 * 299.99138 * 1 2 3 26 26 H 1.08999 * 109.47490 * 59.99804 * 1 2 3 27 27 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46998 * 299.99701 * 5 3 2 29 29 H 1.09001 * 109.47240 * 60.00412 * 5 3 2 30 30 H 1.09000 * 109.47150 * 60.00410 * 8 6 5 31 31 H 1.09002 * 109.47089 * 179.97438 * 8 6 5 32 32 H 1.09002 * 109.47673 * 300.00448 * 8 6 5 33 33 H 0.96998 * 120.00436 * 24.99730 * 9 6 5 34 34 H 1.08001 * 120.25880 * 0.03030 * 11 10 9 35 35 H 1.08002 * 120.79387 * 179.97438 * 12 11 10 36 36 H 0.96999 * 119.99584 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47374 * 89.99708 * 23 22 13 38 38 H 1.09002 * 109.47259 * 210.00310 * 23 22 13 39 39 H 1.08998 * 109.47025 * 329.99945 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.5375 3.2582 -0.8410 8 6 5.5227 2.8238 -0.1261 9 7 3.5794 3.3750 1.2527 10 6 3.3773 4.7430 1.3027 11 6 3.5785 5.5091 0.1519 12 6 3.3799 6.8595 0.2000 13 6 2.9737 7.4361 1.4247 14 6 2.7559 8.8275 1.5259 15 1 2.0853 9.2158 2.2782 16 6 3.4087 9.7031 0.6520 17 7 4.4439 9.2910 -0.0350 18 14 2.8030 11.4603 0.4652 19 1 1.6256 11.6742 1.3445 20 1 3.8861 12.4007 0.8498 21 1 2.4156 11.7027 -0.9478 22 6 2.7911 6.5997 2.5419 23 6 2.3588 7.1919 3.8585 24 7 2.9908 5.3040 2.4420 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.9564 0.7806 0.8892 29 1 3.9557 0.7809 -0.8909 30 1 5.8358 2.3529 -1.0579 31 1 5.8317 3.8691 -0.1260 32 1 5.9853 2.3076 0.7152 33 1 3.4424 2.8352 2.0468 34 1 3.8887 5.0373 -0.7687 35 1 3.5298 7.4719 -0.6768 36 1 4.8968 9.8983 -0.6408 37 1 1.2702 7.1993 3.9137 38 1 2.7600 6.5925 4.6758 39 1 2.7336 8.2123 3.9384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160532057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:51 Heat of formation + Delta-G solvation = -59.254687 kcal Electronic energy + Delta-G solvation = -21569.903660 eV Core-core repulsion = 18284.289932 eV Total energy + Delta-G solvation = -3285.613729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.43962 -38.66244 -36.93224 -35.80087 -33.80645 -31.96813 -30.79139 -29.46500 -28.61712 -27.02033 -26.68136 -24.24309 -22.17759 -21.15805 -20.83402 -19.33349 -17.52272 -17.15246 -16.91593 -16.52886 -16.06603 -15.46043 -14.92489 -14.04693 -13.87438 -13.56318 -13.55386 -13.17724 -13.03247 -12.43771 -12.26050 -12.12503 -12.05960 -11.84722 -11.54290 -11.49851 -11.31701 -11.18269 -11.07708 -10.80628 -10.77370 -10.69225 -10.45938 -10.32149 -9.57715 -9.29232 -8.56663 -8.03735 -7.88430 -6.72053 -6.47223 -4.08059 2.32177 2.70699 2.82522 3.05877 3.14104 3.19607 3.38629 4.02357 4.10874 4.66114 4.80105 4.84852 5.03558 5.09603 5.17448 5.34337 5.45854 5.57062 5.64898 5.81312 5.86211 6.02057 6.23728 6.41026 6.45045 6.49495 6.63380 6.66416 6.77236 6.88369 7.14726 7.31333 7.49762 7.57776 7.84198 7.85203 8.01019 8.37098 8.53397 8.75626 8.95104 9.03384 9.85759 10.33301 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.004162 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.717303 B = 6726.114837 C = 6954.153199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.449 3.551 4 O -0.477 6.477 5 C -0.119 4.119 6 C 0.175 3.825 7 H 0.083 0.917 8 C -0.168 4.168 9 N -0.732 5.732 10 C 0.300 3.700 11 C -0.207 4.207 12 C -0.090 4.090 13 C 0.031 3.969 14 C -0.454 4.454 15 H 0.079 0.921 16 C 0.073 3.927 17 N -0.809 5.809 18 Si 0.904 3.096 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.275 1.275 22 C 0.037 3.963 23 C -0.069 4.069 24 N -0.524 5.524 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.385 0.615 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.276 0.724 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -14.201 -2.509 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.290 3.710 4 O -0.361 6.361 5 C -0.157 4.157 6 C 0.067 3.933 7 H 0.101 0.899 8 C -0.227 4.227 9 N -0.370 5.370 10 C 0.067 3.933 11 C -0.231 4.231 12 C -0.117 4.117 13 C 0.026 3.974 14 C -0.486 4.486 15 H 0.097 0.903 16 C -0.142 4.142 17 N -0.436 5.436 18 Si 0.730 3.270 19 H -0.185 1.185 20 H -0.202 1.202 21 H -0.200 1.200 22 C -0.102 4.102 23 C -0.127 4.127 24 N -0.240 5.240 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.247 -14.267 -2.119 14.477 hybrid contribution -0.280 1.124 -0.725 1.366 sum -1.527 -13.143 -2.843 13.534 Atomic orbital electron populations 1.23197 0.76688 1.03203 1.02647 1.86482 1.23225 1.34113 1.84827 1.23804 0.92285 0.81378 0.73506 1.90802 1.66717 1.35835 1.42753 1.21790 0.87803 1.00075 1.06059 1.20428 0.93990 0.89178 0.89699 0.89889 1.22319 0.95758 1.03473 1.01123 1.43512 1.79015 1.04222 1.10246 1.17581 1.01334 0.84024 0.90373 1.20780 1.10419 0.95154 0.96742 1.21266 0.99663 0.92361 0.98367 1.18139 0.94144 0.94184 0.90889 1.19352 1.23703 0.90692 1.14837 0.90311 1.25834 0.93328 1.00763 0.94264 1.69833 1.14823 1.37313 1.21656 0.86323 0.79773 0.82039 0.78913 1.18510 1.20215 1.19987 1.20716 1.06789 0.87735 0.94938 1.20239 0.99207 0.99961 0.93287 1.66293 1.17785 1.14008 1.25945 0.91934 0.92049 0.88456 0.87539 0.86868 0.92390 0.91158 0.92498 0.78215 0.88598 0.85685 0.91289 0.93557 0.93539 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.42 10.56 -39.26 -0.41 -4.84 16 3 C 0.45 6.22 7.82 36.01 0.28 6.50 16 4 O -0.48 -8.73 15.10 -18.74 -0.28 -9.02 16 5 C -0.12 -1.29 5.36 -27.88 -0.15 -1.44 16 6 C 0.17 2.54 1.81 -67.93 -0.12 2.41 16 7 H 0.08 1.37 6.23 -51.93 -0.32 1.04 16 8 C -0.17 -2.13 9.39 37.15 0.35 -1.79 16 9 N -0.73 -13.63 4.36 -53.86 -0.24 -13.86 16 10 C 0.30 7.08 7.62 -155.12 -1.18 5.90 16 11 C -0.21 -5.01 8.72 -39.64 -0.35 -5.36 16 12 C -0.09 -2.40 8.73 -39.01 -0.34 -2.74 16 13 C 0.03 0.86 5.58 -106.65 -0.59 0.27 16 14 C -0.45 -12.20 8.14 -37.84 -0.31 -12.50 16 15 H 0.08 2.03 6.86 -52.49 -0.36 1.67 16 16 C 0.07 1.87 5.19 -17.34 -0.09 1.78 16 17 N -0.81 -21.24 10.95 55.54 0.61 -20.64 16 18 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 19 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 22 C 0.04 0.95 6.86 -81.79 -0.56 0.39 16 23 C -0.07 -1.54 9.58 36.01 0.34 -1.20 16 24 N -0.52 -13.38 10.29 -8.05 -0.08 -13.46 16 25 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.10 7.62 -51.93 -0.40 0.70 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.38 6.84 8.72 -40.82 -0.36 6.49 16 34 H 0.10 2.07 5.99 -52.49 -0.31 1.76 16 35 H 0.13 3.40 6.26 -52.49 -0.33 3.08 16 36 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.48 6.76 -51.93 -0.35 1.13 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -32.11 327.52 -7.52 -39.63 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.37 Total: 9.52 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.65 Total: -6.34 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.29 Total: -47.96 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.70 Total: -13.86 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.11 -7.52 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160532057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.625 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds