Wall clock time and date at job start Tue Mar 31 2020 00:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 116.99985 * 2 1 4 4 O 1.20818 * 119.99897 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99733 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46905 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.47137 * 305.00590 * 6 5 3 8 8 C 1.52992 * 109.47272 * 184.99814 * 6 5 3 9 9 N 1.46506 * 109.46840 * 65.00115 * 6 5 3 10 10 C 1.38376 * 119.99619 * 205.00045 * 9 6 5 11 11 C 1.39701 * 119.43095 * 359.97438 * 10 9 6 12 12 C 1.36570 * 119.49144 * 180.02562 * 11 10 9 13 13 C 1.41324 * 118.40622 * 359.97438 * 12 11 10 14 14 C 1.41202 * 120.56768 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00179 * 154.75863 * 14 13 12 16 16 C 1.39877 * 119.99954 * 334.75760 * 14 13 12 17 17 N 1.30901 * 119.99809 * 343.69190 * 16 14 13 18 18 Si 1.86803 * 119.99849 * 163.68982 * 16 14 13 19 19 H 1.48501 * 109.47123 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47053 * 120.00090 * 18 16 14 21 21 H 1.48503 * 109.46779 * 239.99811 * 18 16 14 22 22 C 1.40751 * 118.85961 * 0.02562 * 13 12 11 23 23 C 1.50703 * 119.81310 * 179.97438 * 22 13 12 24 24 N 1.31483 * 120.37085 * 359.72323 * 22 13 12 25 25 H 1.09004 * 109.46680 * 299.99138 * 1 2 3 26 26 H 1.08999 * 109.47490 * 59.99804 * 1 2 3 27 27 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46998 * 299.99701 * 5 3 2 29 29 H 1.09001 * 109.47240 * 60.00412 * 5 3 2 30 30 H 1.09000 * 109.47150 * 60.00410 * 8 6 5 31 31 H 1.09002 * 109.47089 * 179.97438 * 8 6 5 32 32 H 1.09002 * 109.47673 * 300.00448 * 8 6 5 33 33 H 0.96998 * 120.00436 * 24.99730 * 9 6 5 34 34 H 1.08001 * 120.25880 * 0.03030 * 11 10 9 35 35 H 1.08002 * 120.79387 * 179.97438 * 12 11 10 36 36 H 0.96999 * 119.99584 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47374 * 89.99708 * 23 22 13 38 38 H 1.09002 * 109.47259 * 210.00310 * 23 22 13 39 39 H 1.08998 * 109.47025 * 329.99945 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 1 3.5375 3.2582 -0.8410 8 6 5.5227 2.8238 -0.1261 9 7 3.5794 3.3750 1.2527 10 6 3.3773 4.7430 1.3027 11 6 3.5785 5.5091 0.1519 12 6 3.3799 6.8595 0.2000 13 6 2.9737 7.4361 1.4247 14 6 2.7559 8.8275 1.5259 15 1 2.0853 9.2158 2.2782 16 6 3.4087 9.7031 0.6520 17 7 4.4439 9.2910 -0.0350 18 14 2.8030 11.4603 0.4652 19 1 1.6256 11.6742 1.3445 20 1 3.8861 12.4007 0.8498 21 1 2.4156 11.7027 -0.9478 22 6 2.7911 6.5997 2.5419 23 6 2.3588 7.1919 3.8585 24 7 2.9908 5.3040 2.4420 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.9564 0.7806 0.8892 29 1 3.9557 0.7809 -0.8909 30 1 5.8358 2.3529 -1.0579 31 1 5.8317 3.8691 -0.1260 32 1 5.9853 2.3076 0.7152 33 1 3.4424 2.8352 2.0468 34 1 3.8887 5.0373 -0.7687 35 1 3.5298 7.4719 -0.6768 36 1 4.8968 9.8983 -0.6408 37 1 1.2702 7.1993 3.9137 38 1 2.7600 6.5925 4.6758 39 1 2.7336 8.2123 3.9384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160532057.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:50 Heat of formation + Delta-G solvation = -79.028191 kcal Electronic energy + Delta-G solvation = -21570.761104 eV Core-core repulsion = 18284.289932 eV Total energy + Delta-G solvation = -3286.471172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53316 -40.47123 -38.18427 -37.09762 -35.64886 -33.59777 -32.69789 -30.97721 -29.79116 -28.60975 -27.84458 -26.10090 -23.49535 -23.06014 -22.17335 -20.81646 -19.08970 -18.57844 -18.36610 -17.63014 -17.34820 -16.95674 -16.71746 -15.62457 -15.43883 -15.07233 -14.88421 -14.45535 -14.40467 -13.85564 -13.82362 -13.55328 -13.38056 -13.17727 -12.96690 -12.93651 -12.89195 -12.80588 -12.60278 -12.58900 -12.17876 -11.92500 -11.77443 -11.48846 -11.45333 -11.15611 -10.34465 -9.97282 -9.85535 -8.61223 -8.31198 -6.05796 0.92295 1.16345 1.26954 1.41448 1.55488 1.58287 1.79469 2.26408 2.65881 2.86796 3.63799 3.79872 3.88997 4.16296 4.24929 4.30682 4.31240 4.45759 4.56696 4.62050 4.68796 4.69736 4.71977 4.79694 4.96438 4.99644 5.03386 5.12540 5.23203 5.39665 5.40172 5.46881 5.58200 5.70715 5.93085 6.04539 6.53875 6.70011 6.81759 6.89718 6.99093 7.19447 7.93099 8.45383 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.004162 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.717303 B = 6726.114837 C = 6954.153199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.450 3.550 4 O -0.533 6.533 5 C -0.108 4.108 6 C 0.167 3.833 7 H 0.060 0.940 8 C -0.159 4.159 9 N -0.723 5.723 10 C 0.305 3.695 11 C -0.215 4.215 12 C -0.109 4.109 13 C -0.005 4.005 14 C -0.484 4.484 15 H 0.080 0.920 16 C 0.032 3.968 17 N -0.841 5.841 18 Si 0.979 3.021 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.269 1.269 22 C 0.018 3.982 23 C -0.062 4.062 24 N -0.542 5.542 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.094 0.906 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.390 0.610 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.283 0.717 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 -15.962 -2.700 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C 0.294 3.706 4 O -0.421 6.421 5 C -0.145 4.145 6 C 0.061 3.939 7 H 0.078 0.922 8 C -0.218 4.218 9 N -0.360 5.360 10 C 0.071 3.929 11 C -0.239 4.239 12 C -0.136 4.136 13 C -0.010 4.010 14 C -0.516 4.516 15 H 0.098 0.902 16 C -0.180 4.180 17 N -0.469 5.469 18 Si 0.800 3.200 19 H -0.181 1.181 20 H -0.193 1.193 21 H -0.194 1.194 22 C -0.119 4.119 23 C -0.119 4.119 24 N -0.260 5.260 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.174 0.826 30 H 0.112 0.888 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.224 0.776 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.842 -16.105 -2.314 16.292 hybrid contribution -0.401 1.439 -0.697 1.648 sum -1.243 -14.666 -3.011 15.023 Atomic orbital electron populations 1.23441 0.75580 1.05429 1.01852 1.86483 1.24336 1.33007 1.84155 1.24421 0.93419 0.80998 0.71762 1.90797 1.68082 1.37622 1.45591 1.21834 0.85724 0.97531 1.09443 1.20689 0.95146 0.91160 0.86921 0.92185 1.22222 0.93945 1.01836 1.03772 1.43697 1.77915 1.02291 1.12129 1.17966 0.99228 0.86120 0.89636 1.20960 1.10367 0.94527 0.98005 1.21288 1.00873 0.93386 0.98018 1.18482 0.95702 0.95131 0.91650 1.19555 1.24766 0.91019 1.16218 0.90198 1.26669 0.92968 1.04966 0.93441 1.69894 1.15708 1.39085 1.22232 0.85203 0.79288 0.76523 0.78939 1.18128 1.19286 1.19406 1.21289 1.06408 0.88163 0.96077 1.20214 0.99923 0.99833 0.91969 1.66451 1.18986 1.13859 1.26668 0.93123 0.92559 0.84698 0.84679 0.82583 0.88752 0.94627 0.90982 0.77586 0.86621 0.87109 0.90617 0.92362 0.92126 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -7.83 10.56 -51.42 -0.54 -8.38 16 3 C 0.45 11.61 7.82 71.24 0.56 12.17 16 4 O -0.53 -19.44 15.10 21.99 0.33 -19.10 16 5 C -0.11 -1.95 5.36 29.85 0.16 -1.79 16 6 C 0.17 4.53 1.81 44.99 0.08 4.61 16 7 H 0.06 1.94 6.23 -2.39 -0.01 1.92 16 8 C -0.16 -3.64 9.39 71.98 0.68 -2.96 16 9 N -0.72 -26.33 4.36 -324.32 -1.42 -27.74 16 10 C 0.31 14.60 7.62 133.31 1.02 15.62 16 11 C -0.21 -10.69 8.72 22.23 0.19 -10.49 16 12 C -0.11 -6.07 8.73 22.64 0.20 -5.87 16 13 C 0.00 -0.26 5.58 -21.18 -0.12 -0.38 16 14 C -0.48 -26.79 8.14 23.40 0.19 -26.60 16 15 H 0.08 4.23 6.86 -2.91 -0.02 4.21 16 16 C 0.03 1.65 5.19 85.23 0.44 2.10 16 17 N -0.84 -45.40 10.95 21.82 0.24 -45.16 16 18 Si 0.98 39.62 29.59 68.60 2.03 41.65 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 C 0.02 0.98 6.86 43.23 0.30 1.27 16 23 C -0.06 -2.77 9.58 71.24 0.68 -2.09 16 24 N -0.54 -28.05 10.29 -179.37 -1.85 -29.90 16 25 H 0.05 1.04 8.13 -2.38 -0.02 1.02 16 26 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 27 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 1.07 7.62 -2.39 -0.02 1.05 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.39 13.36 8.72 -92.71 -0.81 12.55 16 34 H 0.12 5.13 5.99 -2.91 -0.02 5.11 16 35 H 0.11 6.36 6.26 -2.91 -0.02 6.34 16 36 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.07 2.96 6.76 -2.39 -0.02 2.95 16 Total: -1.00 -73.16 327.52 4.63 -68.53 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.26 Total: 32.77 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.57 Total: -12.66 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -3.02 Total: -102.80 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.21 Total: -27.48 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -73.16 4.63 -68.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160532057.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.498 kcal (2) G-P(sol) polarization free energy of solvation -73.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds