Wall clock time and date at job start Tue Mar 31 2020 00:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99831 * 2 1 4 4 O 1.20820 * 120.00022 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99711 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47193 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.47436 * 305.00120 * 6 5 3 8 8 C 1.52996 * 109.47568 * 184.99994 * 6 5 3 9 9 N 1.46501 * 109.47021 * 65.00301 * 6 5 3 10 10 C 1.38089 * 120.00258 * 205.00495 * 9 6 5 11 11 N 1.32276 * 119.90102 * 359.71650 * 10 9 6 12 12 C 1.31969 * 121.86122 * 179.75273 * 11 10 9 13 13 C 1.50701 * 119.27257 * 180.27656 * 12 11 10 14 14 C 1.38680 * 121.45079 * 0.53251 * 12 11 10 15 15 C 1.38008 * 119.62512 * 359.74460 * 14 12 11 16 16 C 1.41002 * 118.28337 * 359.97438 * 15 14 12 17 17 C 1.41012 * 120.70654 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99878 * 204.91968 * 17 16 15 19 19 C 1.39952 * 119.99859 * 24.91824 * 17 16 15 20 20 N 1.30864 * 119.99816 * 14.48589 * 19 17 16 21 21 Si 1.86798 * 119.99912 * 194.48237 * 19 17 16 22 22 H 1.48504 * 109.47181 * 89.99931 * 21 19 17 23 23 H 1.48496 * 109.47237 * 210.00234 * 21 19 17 24 24 H 1.48505 * 109.47259 * 330.00489 * 21 19 17 25 25 H 1.08995 * 109.47113 * 300.00091 * 1 2 3 26 26 H 1.09006 * 109.47050 * 59.99747 * 1 2 3 27 27 H 1.08996 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47457 * 59.99967 * 5 3 2 29 29 H 1.09003 * 109.47481 * 299.99954 * 5 3 2 30 30 H 1.08998 * 109.47523 * 179.97438 * 8 6 5 31 31 H 1.09001 * 109.47307 * 300.00753 * 8 6 5 32 32 H 1.08999 * 109.47137 * 59.99857 * 8 6 5 33 33 H 0.96999 * 120.00066 * 24.99645 * 9 6 5 34 34 H 1.09000 * 109.47274 * 270.25001 * 13 12 11 35 35 H 1.08999 * 109.47569 * 30.25602 * 13 12 11 36 36 H 1.08999 * 109.47295 * 150.25390 * 13 12 11 37 37 H 1.08005 * 120.18746 * 179.71383 * 14 12 11 38 38 H 1.07999 * 120.85536 * 179.97438 * 15 14 12 39 39 H 0.97005 * 119.99432 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.5382 3.2579 -0.8407 8 6 5.5228 2.8238 -0.1240 9 7 3.5784 3.3755 1.2530 10 6 3.3767 4.7407 1.3022 11 7 3.5702 5.4754 0.2194 12 6 3.3842 6.7819 0.2217 13 6 3.6159 7.5614 -1.0471 14 6 2.9855 7.4541 1.3673 15 6 2.7713 6.7474 2.5332 16 6 2.9683 5.3513 2.5140 17 6 2.7646 4.5794 3.6764 18 1 3.2747 3.6346 3.7934 19 6 1.9015 5.0375 4.6783 20 7 1.0737 6.0202 4.4298 21 14 1.9311 4.2463 6.3702 22 1 2.9085 4.9580 7.2324 23 1 0.5797 4.3307 6.9798 24 1 2.3288 2.8211 6.2433 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.9564 0.7806 -0.8892 29 1 3.9557 0.7810 0.8908 30 1 5.8318 3.8690 -0.1241 31 1 5.9847 2.3079 0.7178 32 1 5.8366 2.3525 -1.0554 33 1 3.4408 2.8360 2.0472 34 1 4.6558 7.8850 -1.0901 35 1 3.3963 6.9290 -1.9073 36 1 2.9630 8.4341 -1.0618 37 1 2.8438 8.5246 1.3473 38 1 2.4609 7.2507 3.4369 39 1 0.4758 6.3379 5.1244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160532254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:55 Heat of formation + Delta-G solvation = -62.141855 kcal Electronic energy + Delta-G solvation = -22052.638538 eV Core-core repulsion = 18766.899613 eV Total energy + Delta-G solvation = -3285.738926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.20957 -38.55088 -36.65209 -35.45582 -34.05508 -32.04059 -30.50171 -29.07869 -28.51522 -27.31367 -26.76513 -23.92061 -22.05332 -20.91291 -20.63274 -19.59033 -17.30331 -17.16619 -16.63313 -16.36819 -15.79995 -15.49861 -14.76817 -13.89100 -13.75875 -13.58370 -13.37015 -13.09849 -12.85659 -12.51049 -12.28136 -11.99255 -11.88140 -11.75214 -11.52718 -11.42175 -11.35436 -11.29114 -11.08290 -10.81364 -10.59855 -10.55719 -10.38094 -10.08980 -9.67447 -9.20875 -8.80644 -7.96289 -7.74751 -6.70223 -6.39057 -4.12602 2.55109 2.79125 2.91651 3.08858 3.11001 3.18352 3.32593 3.96956 4.38658 4.76150 4.91489 5.08216 5.20719 5.28397 5.39299 5.53334 5.64772 5.71926 5.83862 5.88707 5.98582 6.14046 6.21626 6.49968 6.51269 6.53821 6.62364 6.65009 6.72712 6.91497 7.06282 7.20913 7.32593 7.76080 7.88700 8.07855 8.10508 8.38242 8.60231 8.75454 8.88235 9.10122 9.90354 10.29937 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.007694 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.676974 B = 3638.333279 C = 5199.462202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.371 6.371 3 C 0.447 3.553 4 O -0.472 6.472 5 C -0.121 4.121 6 C 0.174 3.826 7 H 0.088 0.912 8 C -0.158 4.158 9 N -0.718 5.718 10 C 0.324 3.676 11 N -0.528 5.528 12 C 0.028 3.972 13 C -0.073 4.073 14 C -0.190 4.190 15 C -0.122 4.122 16 C 0.027 3.973 17 C -0.453 4.453 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.801 5.801 21 Si 0.907 3.093 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.398 0.602 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.127 0.873 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 -9.115 -5.693 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.289 6.289 3 C 0.288 3.712 4 O -0.355 6.355 5 C -0.159 4.159 6 C 0.066 3.934 7 H 0.106 0.894 8 C -0.217 4.217 9 N -0.356 5.356 10 C 0.086 3.914 11 N -0.246 5.246 12 C -0.106 4.106 13 C -0.131 4.131 14 C -0.212 4.212 15 C -0.149 4.149 16 C 0.020 3.980 17 C -0.485 4.485 18 H 0.090 0.910 19 C -0.143 4.143 20 N -0.428 5.428 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.189 1.189 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.234 0.766 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.144 0.856 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.552 -9.024 -6.536 11.431 hybrid contribution -0.758 -0.087 1.995 2.136 sum 1.794 -9.111 -4.541 10.337 Atomic orbital electron populations 1.23175 0.76887 1.03009 1.02657 1.86476 1.23087 1.34296 1.84993 1.23817 0.92309 0.81358 0.73701 1.90816 1.66630 1.35736 1.42350 1.21832 0.87765 1.00660 1.05655 1.20354 0.93762 0.88503 0.90742 0.89365 1.22191 0.96106 1.03013 1.00367 1.43627 1.77292 1.04069 1.10596 1.18288 0.99665 0.84197 0.89279 1.66316 1.21998 1.06974 1.29265 1.19949 1.06776 0.89267 0.94646 1.20277 0.99845 0.97843 0.95109 1.21204 1.06771 0.98432 0.94824 1.21378 1.03082 0.93129 0.97287 1.17906 0.95781 0.92765 0.91583 1.19095 1.23113 1.05343 1.00938 0.91043 1.25787 0.93622 0.94699 1.00177 1.69813 1.15699 1.23396 1.33891 0.86345 0.78123 0.80314 0.82048 1.19477 1.20497 1.18883 0.91844 0.92202 0.88619 0.87246 0.87825 0.91357 0.93132 0.92944 0.76561 0.93349 0.92847 0.93025 0.88980 0.85578 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.25 10.57 -39.27 -0.41 -5.67 16 3 C 0.45 7.28 7.82 36.01 0.28 7.56 16 4 O -0.47 -9.89 15.10 -18.75 -0.28 -10.17 16 5 C -0.12 -1.59 5.35 -27.88 -0.15 -1.74 16 6 C 0.17 2.94 2.14 -67.93 -0.15 2.80 16 7 H 0.09 1.74 7.35 -51.93 -0.38 1.36 16 8 C -0.16 -2.31 9.50 37.16 0.35 -1.95 16 9 N -0.72 -15.06 4.27 -53.49 -0.23 -15.29 16 10 C 0.32 8.12 7.49 -155.02 -1.16 6.96 16 11 N -0.53 -13.03 9.07 -8.11 -0.07 -13.10 16 12 C 0.03 0.67 6.79 -82.37 -0.56 0.11 16 13 C -0.07 -1.39 10.15 36.01 0.37 -1.02 16 14 C -0.19 -4.68 9.69 -39.50 -0.38 -5.06 16 15 C -0.12 -3.29 8.79 -38.62 -0.34 -3.63 16 16 C 0.03 0.72 5.60 -106.48 -0.60 0.12 16 17 C -0.45 -11.90 8.54 -37.89 -0.32 -12.22 16 18 H 0.07 1.76 6.67 -52.48 -0.35 1.41 16 19 C 0.07 1.86 5.23 -17.32 -0.09 1.77 16 20 N -0.80 -21.22 10.83 55.55 0.60 -20.62 16 21 Si 0.91 18.94 29.58 -169.99 -5.03 13.91 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 25 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 26 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 8.21 6.80 -40.82 -0.28 7.93 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.09 2.03 8.06 -52.48 -0.42 1.61 16 38 H 0.13 3.48 6.17 -52.49 -0.32 3.15 16 39 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -31.66 331.21 -7.65 -39.31 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.54 Total: 11.45 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.68 Total: -4.82 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.30 Total: -49.01 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.70 Total: -15.84 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.66 -7.65 -39.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160532254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.831 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds