Wall clock time and date at job start Tue Mar 31 2020 00:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99831 * 2 1 4 4 O 1.20820 * 120.00022 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99711 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47193 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.47436 * 305.00120 * 6 5 3 8 8 C 1.52996 * 109.47568 * 184.99994 * 6 5 3 9 9 N 1.46501 * 109.47021 * 65.00301 * 6 5 3 10 10 C 1.38089 * 120.00258 * 205.00495 * 9 6 5 11 11 N 1.32276 * 119.90102 * 359.71650 * 10 9 6 12 12 C 1.31969 * 121.86122 * 179.75273 * 11 10 9 13 13 C 1.50701 * 119.27257 * 180.27656 * 12 11 10 14 14 C 1.38680 * 121.45079 * 0.53251 * 12 11 10 15 15 C 1.38008 * 119.62512 * 359.74460 * 14 12 11 16 16 C 1.41002 * 118.28337 * 359.97438 * 15 14 12 17 17 C 1.41012 * 120.70654 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99878 * 204.91968 * 17 16 15 19 19 C 1.39952 * 119.99859 * 24.91824 * 17 16 15 20 20 N 1.30864 * 119.99816 * 14.48589 * 19 17 16 21 21 Si 1.86798 * 119.99912 * 194.48237 * 19 17 16 22 22 H 1.48504 * 109.47181 * 89.99931 * 21 19 17 23 23 H 1.48496 * 109.47237 * 210.00234 * 21 19 17 24 24 H 1.48505 * 109.47259 * 330.00489 * 21 19 17 25 25 H 1.08995 * 109.47113 * 300.00091 * 1 2 3 26 26 H 1.09006 * 109.47050 * 59.99747 * 1 2 3 27 27 H 1.08996 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47457 * 59.99967 * 5 3 2 29 29 H 1.09003 * 109.47481 * 299.99954 * 5 3 2 30 30 H 1.08998 * 109.47523 * 179.97438 * 8 6 5 31 31 H 1.09001 * 109.47307 * 300.00753 * 8 6 5 32 32 H 1.08999 * 109.47137 * 59.99857 * 8 6 5 33 33 H 0.96999 * 120.00066 * 24.99645 * 9 6 5 34 34 H 1.09000 * 109.47274 * 270.25001 * 13 12 11 35 35 H 1.08999 * 109.47569 * 30.25602 * 13 12 11 36 36 H 1.08999 * 109.47295 * 150.25390 * 13 12 11 37 37 H 1.08005 * 120.18746 * 179.71383 * 14 12 11 38 38 H 1.07999 * 120.85536 * 179.97438 * 15 14 12 39 39 H 0.97005 * 119.99432 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.5382 3.2579 -0.8407 8 6 5.5228 2.8238 -0.1240 9 7 3.5784 3.3755 1.2530 10 6 3.3767 4.7407 1.3022 11 7 3.5702 5.4754 0.2194 12 6 3.3842 6.7819 0.2217 13 6 3.6159 7.5614 -1.0471 14 6 2.9855 7.4541 1.3673 15 6 2.7713 6.7474 2.5332 16 6 2.9683 5.3513 2.5140 17 6 2.7646 4.5794 3.6764 18 1 3.2747 3.6346 3.7934 19 6 1.9015 5.0375 4.6783 20 7 1.0737 6.0202 4.4298 21 14 1.9311 4.2463 6.3702 22 1 2.9085 4.9580 7.2324 23 1 0.5797 4.3307 6.9798 24 1 2.3288 2.8211 6.2433 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.9564 0.7806 -0.8892 29 1 3.9557 0.7810 0.8908 30 1 5.8318 3.8690 -0.1241 31 1 5.9847 2.3079 0.7178 32 1 5.8366 2.3525 -1.0554 33 1 3.4408 2.8360 2.0472 34 1 4.6558 7.8850 -1.0901 35 1 3.3963 6.9290 -1.9073 36 1 2.9630 8.4341 -1.0618 37 1 2.8438 8.5246 1.3473 38 1 2.4609 7.2507 3.4369 39 1 0.4758 6.3379 5.1244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160532254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:54 Heat of formation + Delta-G solvation = -81.051803 kcal Electronic energy + Delta-G solvation = -22053.458535 eV Core-core repulsion = 18766.899613 eV Total energy + Delta-G solvation = -3286.558923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49151 -40.37167 -37.99158 -36.90978 -35.95310 -33.65957 -32.39101 -30.61406 -29.84506 -29.11347 -27.81092 -25.74920 -23.58994 -22.56493 -22.34895 -21.03612 -19.11141 -18.54430 -18.09932 -17.68906 -17.29742 -17.08956 -16.46973 -15.59550 -15.41332 -15.03735 -14.81933 -14.48632 -14.26867 -14.04631 -13.85203 -13.51583 -13.22826 -13.14412 -13.00108 -12.95098 -12.90061 -12.75274 -12.58640 -12.52368 -12.17549 -11.84401 -11.76320 -11.55721 -11.42471 -11.09476 -10.55609 -9.89187 -9.69079 -8.59410 -8.23012 -6.09036 0.94522 1.28008 1.30511 1.37203 1.49678 1.52107 1.81664 2.21600 2.77824 2.88424 3.69429 3.84579 3.95689 4.14591 4.28559 4.31521 4.37445 4.53663 4.53838 4.65179 4.69126 4.75168 4.77489 4.94081 4.95405 4.99889 5.07849 5.19877 5.28358 5.29523 5.43181 5.47257 5.52764 5.86018 5.94184 6.17251 6.46360 6.81025 6.84947 6.89579 6.96568 7.21000 8.00847 8.42899 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.007694 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.676974 B = 3638.333279 C = 5199.462202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.448 3.552 4 O -0.530 6.530 5 C -0.111 4.111 6 C 0.169 3.831 7 H 0.057 0.943 8 C -0.147 4.147 9 N -0.713 5.713 10 C 0.320 3.680 11 N -0.538 5.538 12 C 0.022 3.978 13 C -0.067 4.067 14 C -0.208 4.208 15 C -0.147 4.147 16 C -0.013 4.013 17 C -0.477 4.477 18 H 0.079 0.921 19 C 0.027 3.973 20 N -0.839 5.839 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.254 1.254 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.137 0.863 28 H 0.155 0.845 29 H 0.131 0.869 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.397 0.603 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -11.331 -6.263 13.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C 0.292 3.708 4 O -0.418 6.418 5 C -0.149 4.149 6 C 0.063 3.937 7 H 0.076 0.924 8 C -0.205 4.205 9 N -0.350 5.350 10 C 0.081 3.919 11 N -0.257 5.257 12 C -0.112 4.112 13 C -0.124 4.124 14 C -0.230 4.230 15 C -0.174 4.174 16 C -0.020 4.020 17 C -0.509 4.509 18 H 0.097 0.903 19 C -0.185 4.185 20 N -0.467 5.467 21 Si 0.803 3.197 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.177 1.177 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.155 0.845 28 H 0.173 0.827 29 H 0.149 0.851 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.714 -11.295 -7.136 13.867 hybrid contribution -1.134 0.568 2.033 2.397 sum 2.580 -10.727 -5.102 12.155 Atomic orbital electron populations 1.23428 0.75717 1.05413 1.01710 1.86476 1.24248 1.33032 1.84277 1.24463 0.93492 0.80997 0.71869 1.90809 1.68054 1.37649 1.45323 1.21888 0.85652 0.98275 1.09044 1.20544 0.95179 0.90307 0.87669 0.92444 1.22066 0.93927 1.01547 1.03005 1.43787 1.76379 1.02667 1.12147 1.18599 0.98442 0.86005 0.88867 1.66514 1.22803 1.07409 1.28942 1.20803 1.04642 0.89497 0.96234 1.20322 1.01652 0.97901 0.92564 1.21442 1.07441 0.99548 0.94609 1.21397 1.04579 0.93720 0.97659 1.18305 0.97346 0.93295 0.93030 1.19352 1.23957 1.05925 1.01665 0.90296 1.26704 0.92727 0.95154 1.03951 1.69906 1.16534 1.24970 1.35276 0.85206 0.78196 0.79679 0.76619 1.18933 1.20050 1.17725 0.93540 0.92519 0.84490 0.82738 0.85117 0.94599 0.91602 0.89249 0.76648 0.91236 0.92348 0.91027 0.86940 0.87326 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -9.56 10.57 -51.47 -0.54 -10.11 16 3 C 0.45 14.04 7.82 71.24 0.56 14.59 16 4 O -0.53 -22.61 15.10 21.98 0.33 -22.28 16 5 C -0.11 -2.60 5.35 29.85 0.16 -2.44 16 6 C 0.17 5.51 2.14 44.99 0.10 5.60 16 7 H 0.06 2.25 7.35 -2.39 -0.02 2.24 16 8 C -0.15 -3.94 9.50 71.98 0.68 -3.26 16 9 N -0.71 -30.09 4.27 -323.14 -1.38 -31.47 16 10 C 0.32 16.50 7.49 134.05 1.00 17.51 16 11 N -0.54 -26.98 9.07 -179.57 -1.63 -28.61 16 12 C 0.02 1.08 6.79 42.64 0.29 1.37 16 13 C -0.07 -2.44 10.15 71.24 0.72 -1.71 16 14 C -0.21 -10.51 9.69 22.32 0.22 -10.29 16 15 C -0.15 -8.29 8.79 22.89 0.20 -8.09 16 16 C -0.01 -0.72 5.60 -21.07 -0.12 -0.84 16 17 C -0.48 -25.85 8.54 23.37 0.20 -25.65 16 18 H 0.08 3.97 6.67 -2.91 -0.02 3.95 16 19 C 0.03 1.40 5.23 85.25 0.45 1.85 16 20 N -0.84 -46.20 10.83 21.83 0.24 -45.96 16 21 Si 0.98 39.29 29.58 68.60 2.03 41.32 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 25 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 26 H 0.06 1.31 8.13 -2.38 -0.02 1.30 16 27 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.16 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.40 16.46 6.80 -92.71 -0.63 15.83 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 37 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 38 H 0.11 6.36 6.17 -2.91 -0.02 6.34 16 39 H 0.28 14.20 8.30 -92.70 -0.77 13.43 16 Total: -1.00 -73.30 331.21 5.13 -68.17 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: 0.43 Total: 38.42 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 5.66 Total: -9.48 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -2.77 Total: -106.04 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.21 Total: -32.39 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -73.30 5.13 -68.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160532254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.885 kcal (2) G-P(sol) polarization free energy of solvation -73.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds