Wall clock time and date at job start Tue Mar 31 2020 00:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38204 * 120.41611 * 2 1 4 4 C 1.39597 * 118.42414 * 179.97438 * 3 2 1 5 5 N 1.38731 * 120.41177 * 179.97438 * 4 3 2 6 6 C 1.36723 * 120.00063 * 180.02562 * 5 4 3 7 7 H 1.08002 * 119.99731 * 0.02562 * 6 5 4 8 8 C 1.38914 * 120.00223 * 179.97438 * 6 5 4 9 9 N 1.31501 * 119.99781 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00023 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47452 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47180 * 120.00428 * 10 8 6 13 13 H 1.48507 * 109.46920 * 239.99697 * 10 8 6 14 14 C 1.39660 * 119.17777 * 0.02562 * 4 3 2 15 15 N 1.31243 * 120.76176 * 359.97438 * 14 4 3 16 16 C 1.32957 * 121.72499 * 0.02562 * 15 14 4 17 17 C 1.47698 * 119.62915 * 180.02562 * 16 15 14 18 18 O 1.21486 * 120.00121 * 185.79243 * 17 16 15 19 19 O 1.34751 * 119.99930 * 5.78599 * 17 16 15 20 20 C 1.45192 * 117.00035 * 180.02562 * 19 17 16 21 21 C 1.52992 * 109.47370 * 60.00188 * 20 19 17 22 22 C 1.53002 * 109.47009 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47195 * 300.00017 * 20 19 17 24 24 H 1.09005 * 109.47223 * 96.75068 * 1 2 3 25 25 H 1.09002 * 109.46987 * 216.74824 * 1 2 3 26 26 H 1.09002 * 109.47207 * 336.74619 * 1 2 3 27 27 H 1.07998 * 120.79000 * 359.96824 * 3 2 1 28 28 H 0.97001 * 119.99896 * 0.02828 * 5 4 3 29 29 H 0.97000 * 119.99803 * 179.97438 * 9 8 6 30 30 H 1.07999 * 119.61677 * 179.71964 * 14 4 3 31 31 H 1.09001 * 109.47327 * 59.99700 * 21 20 19 32 32 H 1.09005 * 109.47436 * 180.02562 * 21 20 19 33 33 H 1.09008 * 109.47100 * 299.99917 * 21 20 19 34 34 H 1.09006 * 109.47181 * 60.00043 * 22 20 19 35 35 H 1.09003 * 109.46747 * 179.97438 * 22 20 19 36 36 H 1.08995 * 109.47549 * 300.00100 * 22 20 19 37 37 H 1.08995 * 109.46835 * 59.99897 * 23 20 19 38 38 H 1.08996 * 109.47170 * 180.02562 * 23 20 19 39 39 H 1.09006 * 109.47124 * 300.00037 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2066 1.1918 0.0000 4 6 3.6017 1.1433 0.0005 5 7 4.3452 2.3146 0.0000 6 6 5.7112 2.2573 0.0001 7 1 6.2115 1.3001 0.0000 8 6 6.4556 3.4301 -0.0010 9 7 5.8465 4.5955 -0.0015 10 14 8.3220 3.3517 -0.0017 11 1 8.7579 1.9321 -0.0003 12 1 8.8454 4.0296 -1.2148 13 1 8.8464 4.0312 1.2102 14 6 4.2398 -0.0990 0.0005 15 7 3.5433 -1.2114 0.0005 16 6 2.2138 -1.2038 0.0000 17 6 1.4762 -2.4834 0.0006 18 8 0.2661 -2.4871 -0.1061 19 8 2.1457 -3.6469 0.1193 20 6 1.3563 -4.8654 0.1115 21 6 0.5871 -4.9664 -1.2071 22 6 2.2829 -6.0743 0.2560 23 6 0.3669 -4.8395 1.2783 24 1 -0.3634 -0.1208 -1.0206 25 1 -0.3633 -0.8235 0.6149 26 1 -0.3634 0.9442 0.4057 27 1 1.6864 2.1383 -0.0005 28 1 3.8958 3.1743 -0.0003 29 1 6.3663 5.4144 -0.0019 30 1 5.3188 -0.1448 -0.0036 31 1 1.2919 -4.9849 -2.0384 32 1 -0.0059 -5.8810 -1.2127 33 1 -0.0731 -4.1051 -1.3096 34 1 2.8306 -6.0021 1.1957 35 1 1.6901 -6.9890 0.2506 36 1 2.9880 -6.0930 -0.5749 37 1 -0.2932 -3.9783 1.1759 38 1 -0.2254 -5.7545 1.2728 39 1 0.9149 -4.7676 2.2179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:59 Heat of formation + Delta-G solvation = -60.882619 kcal Electronic energy + Delta-G solvation = -21524.966416 eV Core-core repulsion = 18239.282095 eV Total energy + Delta-G solvation = -3285.684321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30007 -39.04122 -36.63076 -35.68361 -33.70873 -32.55818 -32.50333 -29.05752 -27.26918 -27.24687 -26.95861 -25.03491 -23.59337 -21.93275 -20.51650 -19.31096 -18.28213 -17.13805 -16.39360 -16.19225 -15.48704 -15.19240 -14.72152 -14.53849 -14.19804 -13.84143 -13.38088 -13.30587 -12.95934 -12.42502 -12.35957 -12.25867 -12.19035 -12.05897 -11.96713 -11.71318 -11.57930 -11.46729 -11.41140 -11.21357 -10.87212 -10.79581 -10.70870 -10.57076 -9.98721 -9.27083 -9.23251 -8.56471 -8.47451 -7.14147 -7.02429 -4.13109 1.66754 2.32492 2.91296 2.98557 3.03433 3.26734 3.31775 3.74241 4.52408 4.77827 4.89226 4.91442 5.00066 5.06713 5.19926 5.49583 5.56294 5.62485 5.75123 5.79573 5.81824 5.87237 5.90042 5.97412 6.09220 6.14062 6.24858 6.39093 6.39607 6.43336 6.53070 6.69379 6.85256 6.96777 7.07479 7.20850 7.26247 7.68263 8.28698 8.47673 8.81125 8.97010 9.10916 10.11241 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.003887 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.544512 B = 7202.191062 C = 7988.893346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.000 4.000 3 C -0.232 4.232 4 C 0.165 3.835 5 N -0.505 5.505 6 C -0.307 4.307 7 H 0.115 0.885 8 C 0.029 3.971 9 N -0.868 5.868 10 Si 0.940 3.060 11 H -0.261 1.261 12 H -0.275 1.275 13 H -0.275 1.275 14 C 0.003 3.997 15 N -0.388 5.388 16 C -0.092 4.092 17 C 0.538 3.462 18 O -0.532 6.532 19 O -0.335 6.335 20 C 0.113 3.887 21 C -0.180 4.180 22 C -0.138 4.138 23 C -0.180 4.180 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.119 0.881 28 H 0.404 0.596 29 H 0.284 0.716 30 H 0.151 0.849 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 -10.520 0.334 11.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.004 4.004 3 C -0.262 4.262 4 C 0.033 3.967 5 N -0.100 5.100 6 C -0.437 4.437 7 H 0.132 0.868 8 C -0.178 4.178 9 N -0.501 5.501 10 Si 0.765 3.235 11 H -0.184 1.184 12 H -0.200 1.200 13 H -0.200 1.200 14 C -0.174 4.174 15 N -0.098 5.098 16 C -0.225 4.225 17 C 0.388 3.612 18 O -0.424 6.424 19 O -0.251 6.251 20 C 0.076 3.924 21 C -0.237 4.237 22 C -0.195 4.195 23 C -0.238 4.238 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.137 0.863 28 H 0.240 0.760 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.289 -11.030 0.306 12.236 hybrid contribution 0.247 1.372 -0.031 1.394 sum -5.042 -9.658 0.275 10.898 Atomic orbital electron populations 1.20972 0.91012 1.02060 1.02751 1.20088 0.95999 0.91636 0.92682 1.20321 0.91687 0.97214 1.16942 1.18970 0.91167 0.88536 0.97978 1.41164 1.06248 1.05222 1.57400 1.20083 0.80688 0.95470 1.47501 0.86753 1.25551 1.02317 0.94320 0.95653 1.69645 1.38042 0.98189 1.44222 0.85612 0.79931 0.79510 0.78425 1.18431 1.20028 1.20029 1.21992 0.99269 0.85626 1.10482 1.67124 1.06937 1.30860 1.04890 1.18697 0.89688 0.88827 1.25288 1.20763 0.85272 0.83395 0.71784 1.90597 1.14957 1.87386 1.49483 1.86766 1.40716 1.14005 1.83642 1.22027 0.91173 0.83301 0.95879 1.22467 1.01179 1.03746 0.96341 1.21804 0.99483 0.95013 1.03233 1.22476 0.99901 1.03854 0.97519 0.91404 0.89309 0.93127 0.86294 0.76033 0.90591 0.83180 0.92285 0.91823 0.89639 0.91647 0.91004 0.91610 0.89647 0.91805 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 8.73 36.00 0.31 -1.56 16 2 C 0.00 0.00 5.93 -104.13 -0.62 -0.62 16 3 C -0.23 -4.68 9.68 -39.09 -0.38 -5.05 16 4 C 0.17 3.58 6.64 -83.70 -0.56 3.03 16 5 N -0.51 -11.31 5.41 -9.47 -0.05 -11.37 16 6 C -0.31 -7.07 9.56 -15.12 -0.14 -7.22 16 7 H 0.11 2.52 5.69 -52.49 -0.30 2.22 16 8 C 0.03 0.66 5.50 -17.44 -0.10 0.57 16 9 N -0.87 -20.74 13.05 55.50 0.72 -20.02 16 10 Si 0.94 17.79 29.55 -169.99 -5.02 12.76 16 11 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 12 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 13 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 14 C 0.00 0.06 10.47 -17.27 -0.18 -0.12 16 15 N -0.39 -8.63 10.11 -9.60 -0.10 -8.72 16 16 C -0.09 -1.96 6.74 -83.01 -0.56 -2.52 16 17 C 0.54 10.61 7.18 34.60 0.25 10.85 16 18 O -0.53 -10.05 8.83 -19.25 -0.17 -10.22 16 19 O -0.33 -6.19 9.70 -40.63 -0.39 -6.58 16 20 C 0.11 1.61 1.13 -90.62 -0.10 1.51 16 21 C -0.18 -2.40 8.37 37.15 0.31 -2.09 16 22 C -0.14 -1.58 8.85 37.16 0.33 -1.25 16 23 C -0.18 -2.38 8.37 37.16 0.31 -2.07 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.09 1.54 5.84 -51.93 -0.30 1.24 16 26 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 27 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.40 9.04 7.90 -40.82 -0.32 8.72 16 29 H 0.28 6.35 8.31 -40.82 -0.34 6.01 16 30 H 0.15 3.13 5.96 -52.49 -0.31 2.82 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.31 5.88 -51.92 -0.31 1.00 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.29 5.88 -51.93 -0.31 0.98 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -25.56 321.85 -6.49 -32.05 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -5.21 Total: 13.77 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.12 Total: -6.53 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.58 Total: -40.11 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.56 Total: -16.80 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.02 Total: 12.76 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -25.56 -6.49 -32.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.832 kcal (2) G-P(sol) polarization free energy of solvation -25.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds