Wall clock time and date at job start Tue Mar 31 2020 00:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38204 * 120.41611 * 2 1 4 4 C 1.39597 * 118.42414 * 179.97438 * 3 2 1 5 5 N 1.38731 * 120.41177 * 179.97438 * 4 3 2 6 6 C 1.36723 * 120.00063 * 180.02562 * 5 4 3 7 7 H 1.08002 * 119.99731 * 0.02562 * 6 5 4 8 8 C 1.38914 * 120.00223 * 179.97438 * 6 5 4 9 9 N 1.31501 * 119.99781 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00023 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47452 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47180 * 120.00428 * 10 8 6 13 13 H 1.48507 * 109.46920 * 239.99697 * 10 8 6 14 14 C 1.39660 * 119.17777 * 0.02562 * 4 3 2 15 15 N 1.31243 * 120.76176 * 359.97438 * 14 4 3 16 16 C 1.32957 * 121.72499 * 0.02562 * 15 14 4 17 17 C 1.47698 * 119.62915 * 180.02562 * 16 15 14 18 18 O 1.21486 * 120.00121 * 185.79243 * 17 16 15 19 19 O 1.34751 * 119.99930 * 5.78599 * 17 16 15 20 20 C 1.45192 * 117.00035 * 180.02562 * 19 17 16 21 21 C 1.52992 * 109.47370 * 60.00188 * 20 19 17 22 22 C 1.53002 * 109.47009 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47195 * 300.00017 * 20 19 17 24 24 H 1.09005 * 109.47223 * 96.75068 * 1 2 3 25 25 H 1.09002 * 109.46987 * 216.74824 * 1 2 3 26 26 H 1.09002 * 109.47207 * 336.74619 * 1 2 3 27 27 H 1.07998 * 120.79000 * 359.96824 * 3 2 1 28 28 H 0.97001 * 119.99896 * 0.02828 * 5 4 3 29 29 H 0.97000 * 119.99803 * 179.97438 * 9 8 6 30 30 H 1.07999 * 119.61677 * 179.71964 * 14 4 3 31 31 H 1.09001 * 109.47327 * 59.99700 * 21 20 19 32 32 H 1.09005 * 109.47436 * 180.02562 * 21 20 19 33 33 H 1.09008 * 109.47100 * 299.99917 * 21 20 19 34 34 H 1.09006 * 109.47181 * 60.00043 * 22 20 19 35 35 H 1.09003 * 109.46747 * 179.97438 * 22 20 19 36 36 H 1.08995 * 109.47549 * 300.00100 * 22 20 19 37 37 H 1.08995 * 109.46835 * 59.99897 * 23 20 19 38 38 H 1.08996 * 109.47170 * 180.02562 * 23 20 19 39 39 H 1.09006 * 109.47124 * 300.00037 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2066 1.1918 0.0000 4 6 3.6017 1.1433 0.0005 5 7 4.3452 2.3146 0.0000 6 6 5.7112 2.2573 0.0001 7 1 6.2115 1.3001 0.0000 8 6 6.4556 3.4301 -0.0010 9 7 5.8465 4.5955 -0.0015 10 14 8.3220 3.3517 -0.0017 11 1 8.7579 1.9321 -0.0003 12 1 8.8454 4.0296 -1.2148 13 1 8.8464 4.0312 1.2102 14 6 4.2398 -0.0990 0.0005 15 7 3.5433 -1.2114 0.0005 16 6 2.2138 -1.2038 0.0000 17 6 1.4762 -2.4834 0.0006 18 8 0.2661 -2.4871 -0.1061 19 8 2.1457 -3.6469 0.1193 20 6 1.3563 -4.8654 0.1115 21 6 0.5871 -4.9664 -1.2071 22 6 2.2829 -6.0743 0.2560 23 6 0.3669 -4.8395 1.2783 24 1 -0.3634 -0.1208 -1.0206 25 1 -0.3633 -0.8235 0.6149 26 1 -0.3634 0.9442 0.4057 27 1 1.6864 2.1383 -0.0005 28 1 3.8958 3.1743 -0.0003 29 1 6.3663 5.4144 -0.0019 30 1 5.3188 -0.1448 -0.0036 31 1 1.2919 -4.9849 -2.0384 32 1 -0.0059 -5.8810 -1.2127 33 1 -0.0731 -4.1051 -1.3096 34 1 2.8306 -6.0021 1.1957 35 1 1.6901 -6.9890 0.2506 36 1 2.9880 -6.0930 -0.5749 37 1 -0.2932 -3.9783 1.1759 38 1 -0.2254 -5.7545 1.2728 39 1 0.9149 -4.7676 2.2179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:58 Heat of formation + Delta-G solvation = -73.934623 kcal Electronic energy + Delta-G solvation = -21525.532394 eV Core-core repulsion = 18239.282095 eV Total energy + Delta-G solvation = -3286.250298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76947 -40.62868 -38.07933 -37.29082 -34.96370 -34.21507 -34.09686 -30.70897 -28.50622 -28.29138 -28.22577 -26.70141 -25.21067 -23.41167 -22.09441 -20.66155 -19.95066 -18.64776 -18.04600 -17.51293 -16.95045 -16.79203 -16.23295 -16.03211 -15.44569 -15.34888 -14.80647 -14.53308 -14.43192 -13.87348 -13.84348 -13.80088 -13.51753 -13.19942 -13.10543 -13.02666 -12.96927 -12.76360 -12.65426 -12.51184 -12.46889 -12.27324 -12.07348 -11.93112 -11.23333 -10.94817 -10.70389 -10.21483 -10.08808 -8.84961 -8.71246 -5.90023 0.04370 0.65317 1.41533 1.44228 1.57592 1.74841 1.93053 2.18425 2.83768 3.10439 3.28954 3.65936 3.84839 3.89095 3.98352 4.05011 4.22893 4.28684 4.41105 4.64400 4.67161 4.81527 4.81827 4.84396 4.88443 4.90968 4.92997 5.01320 5.13714 5.14963 5.25713 5.34012 5.38711 5.43070 5.46739 5.55900 5.74863 6.03881 6.57762 6.93892 7.13408 7.27540 7.42355 8.44205 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.003887 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.544512 B = 7202.191062 C = 7988.893346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.005 4.005 3 C -0.231 4.231 4 C 0.164 3.836 5 N -0.520 5.520 6 C -0.329 4.329 7 H 0.117 0.883 8 C -0.010 4.010 9 N -0.903 5.903 10 Si 1.002 2.998 11 H -0.254 1.254 12 H -0.274 1.274 13 H -0.274 1.274 14 C -0.012 4.012 15 N -0.402 5.402 16 C -0.104 4.104 17 C 0.537 3.463 18 O -0.525 6.525 19 O -0.351 6.351 20 C 0.097 3.903 21 C -0.176 4.176 22 C -0.134 4.134 23 C -0.176 4.176 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.401 0.599 29 H 0.285 0.715 30 H 0.154 0.846 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 -12.298 0.387 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.009 4.009 3 C -0.260 4.260 4 C 0.034 3.966 5 N -0.117 5.117 6 C -0.458 4.458 7 H 0.135 0.865 8 C -0.214 4.214 9 N -0.538 5.538 10 Si 0.824 3.176 11 H -0.178 1.178 12 H -0.200 1.200 13 H -0.200 1.200 14 C -0.187 4.187 15 N -0.112 5.112 16 C -0.238 4.238 17 C 0.386 3.614 18 O -0.417 6.417 19 O -0.268 6.268 20 C 0.062 3.938 21 C -0.233 4.233 22 C -0.191 4.191 23 C -0.233 4.233 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.158 0.842 28 H 0.236 0.764 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.156 -12.839 0.359 14.242 hybrid contribution 0.288 1.675 -0.048 1.701 sum -5.867 -11.163 0.311 12.615 Atomic orbital electron populations 1.20957 0.88601 1.03228 1.03250 1.20468 0.97767 0.91021 0.91672 1.20630 0.91195 0.98357 1.15862 1.19188 0.91952 0.88390 0.97081 1.41110 1.06150 1.05061 1.59334 1.20326 0.81213 0.95888 1.48415 0.86507 1.26334 1.06019 0.93839 0.95196 1.69717 1.39356 0.98700 1.46050 0.84706 0.75189 0.79576 0.78124 1.17783 1.19984 1.19977 1.22110 0.99632 0.85850 1.11150 1.67142 1.07642 1.31068 1.05338 1.19270 0.89751 0.90495 1.24251 1.20547 0.85223 0.83606 0.72051 1.90602 1.14542 1.87573 1.48948 1.86735 1.41978 1.14858 1.83250 1.22543 0.92011 0.82414 0.96862 1.22425 1.00879 1.04319 0.95658 1.21844 0.99414 0.94832 1.03010 1.22433 0.99491 1.04488 0.96878 0.90637 0.89739 0.90757 0.84193 0.76400 0.90482 0.82907 0.92631 0.88671 0.91846 0.91848 0.87718 0.91887 0.91768 0.88685 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.28 8.73 71.23 0.62 -2.66 16 2 C -0.01 -0.20 5.93 -19.55 -0.12 -0.32 16 3 C -0.23 -9.10 9.68 22.59 0.22 -8.88 16 4 C 0.16 7.14 6.64 38.72 0.26 7.39 16 5 N -0.52 -23.71 5.41 -183.88 -1.00 -24.70 16 6 C -0.33 -15.42 9.56 84.09 0.80 -14.61 16 7 H 0.12 5.24 5.69 -2.91 -0.02 5.23 16 8 C -0.01 -0.48 5.50 84.90 0.47 -0.02 16 9 N -0.90 -43.98 13.05 21.66 0.28 -43.70 16 10 Si 1.00 36.63 29.55 68.60 2.03 38.66 16 11 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 12 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 13 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 14 C -0.01 -0.54 10.47 85.12 0.89 0.35 16 15 N -0.40 -17.91 10.11 -184.29 -1.86 -19.77 16 16 C -0.10 -4.37 6.74 41.80 0.28 -4.09 16 17 C 0.54 20.78 7.18 70.32 0.51 21.28 16 18 O -0.52 -19.24 8.83 19.88 0.18 -19.06 16 19 O -0.35 -12.69 9.70 -56.61 -0.55 -13.24 16 20 C 0.10 2.58 1.13 -10.80 -0.01 2.57 16 21 C -0.18 -4.29 8.37 71.98 0.60 -3.69 16 22 C -0.13 -2.70 8.85 71.98 0.64 -2.06 16 23 C -0.18 -4.24 8.37 71.98 0.60 -3.63 16 24 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.08 2.78 5.84 -2.39 -0.01 2.77 16 26 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 27 H 0.14 4.86 8.06 -2.91 -0.02 4.83 16 28 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 29 H 0.29 13.00 8.31 -92.71 -0.77 12.22 16 30 H 0.15 6.52 5.96 -2.91 -0.02 6.50 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.06 1.84 5.88 -2.38 -0.01 1.82 16 34 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.83 5.88 -2.39 -0.01 1.82 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -54.92 321.85 5.18 -49.74 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: 0.34 Total: 40.45 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.76 Total: -8.37 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -2.57 Total: -88.17 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.37 Total: -32.31 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Total: -54.92 5.18 -49.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.199 kcal (2) G-P(sol) polarization free energy of solvation -54.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds